ViewGene
Locus Name:
GeneID:
Location:

GeneID:1356
TrivialName: PA14_33600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33600
PAO1 Ortholog Locus:PA2403
Sequence Length:1212
Protein Length:403
Start: 2956296
Stop: 2955085
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05791.1|AE004668_1 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 403/403 (100%), Positives = 403/403 (100%)
Sequence:
ATGTCGAAAAAGTCCCGCTCCAGACTCTGGTTCCTCGTCCACAGCTGGCTGGCCCTGCCCATCTGGTTCTTC
GTCCTGATCGTCTGCGTCACCGGCACCCTGGCGGTGGTCAGCCAGGAGATCGTCTGGCTGGCCAACCCTGAC
GTCCGGGCCAGCAAGCCCTACGAAGATGCCGAGCCGCTCAGCTTCAGCCAGGTCCTGAAGGCGATCAACGAA
GCCCAACCGGACCTCCTGGTCGAATCCATCCAGCGCCCCGACGAAGAGCATTTCGCCCTTACTGCCGAGGTC
AGCTATCCCGGCGGCAGCGAGGCGACCCTGTACATCAACCCCTACACCGGCGCCATCCAGGGCGAAAGCCCC
TCCTTCGACTTTCGTCAGTTCACCCGTGCCCTGCACGGATGGTGGCTGGTTCCGTTCAACAACGGCTACAGC
TGGGGCTGGTACATGGTCTCGCTGCTCGGCCTCCCCATGCTGGCATCGCTCATCACCGGGCTGGTGGTCTAT
AAACGATTCTGGAAGGGCTTTCTCAAACCCAGATTACGCATCAACCAGGGCGCCCGGATCTTCTGGGGCGAC
TTCCATCGCCTGAGCGGCATCTGGTCGATCTGGTTCATCGCCCTGATTTCCATCACCGGCACCTGGTTCCTG
ATCCAGGCCATCCTTGCCGACAACCACGTCACCCTGACCAACGACGGCATCCCTCCGGTCATCGCACGCGCC
GACGTGCCCCGCGCCGCACCCGGTCAGAAGGTTCCATACATCGAGCTGGACGagGCGGTGCGGCTCGTCACC
GGGCGTATCCCCAGCCTGGAGGCCAGCGCGGTGTtcTTgCccgGCAACgCctaCAGCCCGATGTTCGTGgct
ggaCGcgGcTGGTATCCGcTcATGTtCcAGTCGGCCGCGCTGAACccTTATACCGGCAAgatCgAAACCACC
CgcttgCTCAGCGACCGTACCCCCCTGCAGTTCGTCACCGAATCCATGCGTCCCCTGCACACCGGCGATTTC
GGCGGTATCTGGGTCAAGCTGATCTGGTTCGTCTTCGGCCTGCTGCTGAGCATGATGGTGCTCAGCGGCCTG
CTGATCTGGAGCAAGCGCACCGCACAGGCCACCGCCGCGCTGGTCAAGCGCGGCAAGCGCCCGGCGCGCCAG
CCGAAACCGGCCAAGCCGGCGCCGGTAATGGCCAACCAGACCGCGGAGGGACAGCCATGA
Translation:
MSKKSRSRLWFLVHSWLALPIWFFVLIVCVTGTLAVVSQEIVWLANPDVRASKPYEDAEPLSFSQVLKAINE
AQPDLLVESIQRPDEEHFALTAEVSYPGGSEATLYINPYTGAIQGESPSFDFRQFTRALHGWWLVPFNNGYS
WGWYMVSLLGLPMLASLITGLVVYKRFWKGFLKPRLRINQGARIFWGDFHRLSGIWSIWFIALISITGTWFL
IQAILADNHVTLTNDGIPPVIARADVPRAAPGQKVPYIELDEAVRLVTGRIPSLEASAVFLPGNAYSPMFVA
GRGWYPLMFQSAALNPYTGKIETTRLLSDRTPLQFVTESMRPLHTGDFGGIWVKLIWFVFGLLLSMMVLSGL
LIWSKRTAQATAALVKRGKRPARQPKPAKPAPVMANQTAEGQP*
AnnotationID:1365GeneID:1356
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 10:10:11
Gene Name:
Confidence Code:3
GeneProduct:putative iron-regulated membrane protein
Cell Localization:()
Synonyms:PA2403
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3182,pfam03929
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55662.1| (AE016863) iron-regulated membrane protein, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 411

 Score =  534 bits (1375), Expect = e-151
 Identities = 255/402 (63%), Positives = 314/402 (78%), Gaps = 3/402 (0%)








 
Structural Features:
COG3182, PiuB, Uncharacterized iron-regulated membrane protein
CD-Length = 442 residues,  93.9% aligned
Score =  276 bits (707), Expect = 3e-75
Identities = 109/426 (25%), Positives = 173/426 (40%), Gaps = 36/426 (8%)

pfam03929, DUF337, Uncharacterized iron-regulated membrane protein
CD-Length = 368 residues,  99.5% aligned
Score =  234 bits (599), Expect = 1e-62
Identities = 95/371 (25%), Positives = 157/371 (42%), Gaps = 16/371 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2715




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19860




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32940




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1356_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1356
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2465
                           PA2403_tr
                           translation of PA2403
                           403
                           99.99
                           99.99
                           0
                           2130.0
     

     
     
78366
                           gb|AAG05791.1|AE004668_1
                           (AE004668) hypothetical protein PA2403 [Pseudomonas aeruginosa PAO1]
                           403
                           99.99
                           99.99
                           0
                           2130.0
     

     
     
78367
                           gb|AAO17443.1|
                           (AF540993) PA2403 [Pseudomonas aeruginosa]
                           403
                           83.62
                           93.05
                           0
                           1841.0
     

     
     
78368
                           gb|AAO17432.1|
                           (AF540992) PA2403 [Pseudomonas aeruginosa]
                           403
                           83.62
                           93.05
                           0
                           1841.0
     

     
     
78369
                           gb|AAN69391.1|AE016576_1
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           406
                           63.30
                           77.83
                           12
                           1416.0
     

     






      

          
GC ORFID: 44358How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2403Glimmer Score: 

          
Start: 1997620Stop: 1998831

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2403 translation of PA2403Homolog Bit Score 825.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene480 (ORF: BLASTX 540.0), t_PA2403 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAAAAAGTCCCGCTCCAGACTCTGGTTCCTCGTCCACAGCTGGCTGGCCCTGCCCATCTGGTTCTTC 
GTCCTGATCGTCTGCGTCACCGGCACCCTGGCGGTGGTCAGCCAGGAGATCGTCTGGCTGGCCAACCCTGAC 
GTCCGGGCCAGCAAGCCCTACGAAGATGCCGAGCCGCTCAGCTTCAGCCAGGTCCTGAAGGCGATCAACGAA 
GCCCAACCGGACCTCCTGGTCGAATCCATCCAGCGCCCCGACGAAGAGCATTTCGCCCTTACTGCCGAGGTC 
AGCTATCCCGGCGGCAGCGAGGCGACCCTGTACATCAACCCCTACACCGGCGCCATCCAGGGCGAAAGCCCC 
TCCTTCGACTTTCGTCAGTTCACCCGTGCCCTGCACGGATGGTGGCTGGTTCCGTTCAACAACGGCTACAGC 
TGGGGCTGGTACATGGTCTCGCTGCTCGGCCTCCCCATGCTGGCATCGCTCATCACCGGGCTGGTGGTCTAT 
AAACGATTCTGGAAGGGCTTTCTCAAACCCAGATTACGCATCAACCAGGGCGCCCGGATCTTCTGGGGCGAC 
TTCCATCGCCTGAGCGGCATCTGGTCGATCTGGTTCATCGCCCTGATTTCCATCACCGGCACCTGGTTCCTG 
ATCCAGGCCATCCTTGCCGACAACCACGTCACCCTGACCAACGACGGCATCCCTCCGGTCATCGCACGCGCC 
GACGTGCCCCGCGCCGCACCCGGTCAGAAGGTTCCATACATCGAGCTGGACGagGCGGTGCGGCTCGTCACC 
GGGCGTATCCCCAGCCTGGAGGCCAGCGCGGTGTtcTTgCccgGCAACgCctaCAGCCCGATGTTCGTGgct 
ggaCGcgGcTGGTATCCGcTcATGTtCcAGTCGGCCGCGCTGAACccTTATACCGGCAAgatCgAAACCACC 
CgcttgCTCAGCGACCGTACCCCCCTGCAGTTCGTCACCGAATCCATGCGTCCCCTGCACACCGGCGATTTC 
GGCGGTATCTGGGTCAAGCTGATCTGGTTCGTCTTCGGCCTGCTGCTGAGCATGATGGTGCTCAGCGGCCTG 
CTGATCTGGAGCAAGCGCACCGCACAGGCCACCGCCGCGCTGGTCAAGCGCGGCAAGCGCCCGGCGCGCCAG 
CCGAAACCGGCCAAGCCGGCGCCGGTAATGGCCAACCAGACCGCGGAGGGACAGCCATGA