ViewGene

Locus Name:
GeneID:
Location:

GeneID:1354
TrivialName: PA14_26480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26480
PAO1 Ortholog Locus:PA2907
Sequence Length:1248
Protein Length:415
Start: 2307835
Stop: 2306588
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06295.1|AE004717_1 (AE004717) precorrin-6y-dependent methyltransferase CobL [Pseudomonas aeruginosa PAO1]
Identities = 413/415 (99%), Positives = 415/415 (100%)
Sequence:
GTGTCATCGGCAGACTCGACGCCGCCCTGGCTGACCCTGGTGGGCATCGGCGAGGACGGTTATCCCGGCCTC
GGCAAGCAGGCCCGGCGTGCCCTGCTGCAAGCCAGCCGGATCGTCGGCGCGGCGCGCCAGCTGGAACTGCTG
CCGCCGTGCATCGGCGCCGCCCGCGAAACCTGGCCGACGCCGTTCTCCCTGGAACCATTGCTGGCCCGGCGC
GGCCAGCCGACCTGCGTGCTGGCCAGCGGCGACCCGATGCTGTTCGGCGTCGGCGCCAGTCTCGCCCGGCAA
CTGCCGGCGACCGAACTGCGAGTCCTGCCGGCGCCCTCCTCCCTCTCGCTGGCCGCCGCCCGCCTCGGCTGG
GCCCTCCAGGAGGTCGCCTGCCTGTCGCTGGTGGCGCGTCCGCTGGCGGCGCTGCAGGCACAGGTCCACGAC
GGCCGGCGCCTGCTGGTCCTCAGCAATGACGGCGACAGCCCGGCCGCCATCGCCCGCCTGTTGAGCGCCCGT
GGCTTCGGCGCCAGTCGCCTGAGCGTGCTGGAACACCTCGGCGGGCCGCTCGAGCGCCGTCTCGACGGCCTC
GCCGGCGACTGGTCGCTGCCACGCGCCGCCGATCTCAACCTGGTGGCGGTGGAATGCCGCGCCGGCGCCGGC
GCCGTGCGCCTGCCGCTGACCCCGGGCCTGGCCGACGAGGCCTATCGCCACGACGGCCAGTTGACCAAGCGC
GACGTCCGCGCCGTGACCCTGGCGCGCCTGGCGCCCTGCCCCGGCGAGCTGCTCTGGGACGTCGGCGCCGGC
TGCGGCTCCATCGGCATCGAATGGATGCGCGCGCACCCCAGTTGCCGGGCGATCGCCATCGAAGCCAACGAC
GAGCGCCAGGAACATATCCGCCACAACCGCGACGCCCTCGGCGTACCGTCCCTGCACCTGGTCGCCGGCAGC
GCCCCGGAGGCGCTGCTGGAACTGCCCGAGCCGGACGCCATCTTCATCGGCGGCGGGGTCACCGCCGAGGGC
GTGCTGGAAACCTGCTGGGAGCGCCTGCGGCCCGGCGGCCGCCTGCTCGCCAACGCGGTCACCCTGCAGAGC
GAACGGGTGCTGCTCGACTGGCAGCAACGCCTGGGGGGCGACCTCACCCGCCTCGGCGTCGCCCACGCGCGA
CCGCTGGGCGGTTTCGACACCTGGCGCCAGGCCTTGCCGATCACCCTGCTGGAATTGCGCAAACCCGCCGCC
AGGAAGCCTCCCCGCGATGCGTGA
Translation:
MSSADSTPPWLTLVGIGEDGYPGLGKQARRALLQASRIVGAARQLELLPPCIGAARETWPTPFSLEPLLARR
GQPTCVLASGDPMLFGVGASLARQLPATELRVLPAPSSLSLAAARLGWALQEVACLSLVARPLAALQAQVHD
GRRLLVLSNDGDSPAAIARLLSARGFGASRLSVLEHLGGPLERRLDGLAGDWSLPRAADLNLVAVECRAGAG
AVRLPLTPGLADEAYRHDGQLTKRDVRAVTLARLAPCPGELLWDVGAGCGSIGIEWMRAHPSCRAIAIEAND
ERQEHIRHNRDALGVPSLHLVAGSAPEALLELPEPDAIFIGGGVTAEGVLETCWERLRPGGRLLANAVTLQS
ERVLLDWQQRLGGDLTRLGVAHARPLGGFDTWRQALPITLLELRKPAARKPPRDA*
AnnotationID:1363GeneID:1354
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 06:06:56
Gene Name:cobL
Confidence Code:2
GeneProduct:precorrin-6y-dependent methyltransferase CobL
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2242,COG2241
Secondary Functional Category(ies):
EC Number:2.1.1.132
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58307.1| (AE016873) precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 400

 Score =  570 bits (1469), Expect = e-162
 Identities = 284/398 (71%), Positives = 322/398 (80%)

>gb|AAN70399.1|AE016682_1 (AE016792) precorrin-6Y C5,15-methyltransferase (decarboxylating)
           [Pseudomonas putida KT2440]
          Length = 403

 Score =  555 bits (1429), Expect = e-157
 Identities = 282/399 (70%), Positives = 317/399 (79%)

>gb|AAL51897.1| (AE009513) PRECORRIN-6Y C5,15-METHYLTRANSFERASE (DECARBOXYLATING)
           [Brucella melitensis 16M]
          Length = 401

 Score =  462 bits (1190), Expect = e-129
 Identities = 242/393 (61%), Positives = 280/393 (71%), Gaps = 2/393 (0%)
Structural Features:
COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]
CD-Length = 187 residues, 100.0% aligned
Score =  231 bits (590), Expect = 1e-61
Identities = 91/187 (48%), Positives = 126/187 (67%), Gaps = 3/187 (1%)

COG2241, CobL, Precorrin-6B methylase 1 [Coenzyme metabolism]
CD-Length = 210 residues, 100.0% aligned
Score =  219 bits (559), Expect = 5e-58
Identities = 101/210 (48%), Positives = 132/210 (62%), Gaps = 4/210 (1%)
Genomic Context:
Comment:
ReferenceID:14335
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19856
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36150
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1354_cdd.html
URL:
ReferenceID:36414
Author/Investigator(s): Crouzet J, Cameron B, Cauchois L, Rigault S, Rouyez MC, Blanche F, Thibaut D, Debussche L.
Title: Genetic and sequence analysis of an 8.7-kilobase Pseudomonas denitrificans fragment carrying eight genes involved in transformation of precorrin-2 to cobyrinic acid.
PubMed: 2211521
MedLine:
Source:
J Bacteriol. 1990 Oct;172(10):5980-90.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2211521
Homologs By Global Alignment
Gene ID:1354

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2463 PA2907_tr translation of PA2907 415 99.51 99.99 0 2134.0
78295 gb|AAG06295.1|AE004717_1 (AE004717) precorrin-6y-dependent methyltransferase CobL [Pseudomonas aeruginosa PAO1] 415 99.27 99.99 0 2131.0
78296 gb|AAO58307.1| (AE016873) precorrin-6Y C5,15-methyltransferase (decarboxylating) [Pseudomonas syringae pv. tomato str. DC3000] 415 68.43 77.59 15 1467.0
78297 gb|AAN70399.1|AE016682_1 (AE016792) precorrin-6Y C5,15-methyltransferase (decarboxylating) [Pseudomonas putida KT2440] 415 68.43 76.86 12 1424.0
78298 gb|AAN75029.1| (AY150801) CobL [Rhodospirillum rubrum] 421 59.38 69.59 19 1224.0
GC ORFID: 44356How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2907Glimmer Score:
Start: 2646090Stop: 2647337
Length: 1248
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2907 translation of PA2907Homolog Bit Score 826.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5782 (ORF: BLASTX 574.0), t_PA2907 (ORF: GLIMMER)
GC ORF Sequence
GTGTCATCGGCAGACTCGACGCCGCCCTGGCTGACCCTGGTGGGCATCGGCGAGGACGGTTATCCCGGCCTC
GGCAAGCAGGCCCGGCGTGCCCTGCTGCAAGCCAGCCGGATCGTCGGCGCGGCGCGCCAGCTGGAACTGCTG
CCGCCGTGCATCGGCGCCGCCCGCGAAACCTGGCCGACGCCGTTCTCCCTGGAACCATTGCTGGCCCGGCGC
GGCCAGCCGACCTGCGTGCTGGCCAGCGGCGACCCGATGCTGTTCGGCGTCGGCGCCAGTCTCGCCCGGCAA
CTGCCGGCGACCGAACTGCGAGTCCTGCCGGCGCCCTCCTCCCTCTCGCTGGCCGCCGCCCGCCTCGGCTGG
GCCCTCCAGGAGGTCGCCTGCCTGTCGCTGGTGGCGCGTCCGCTGGCGGCGCTGCAGGCACAGGTCCACGAC
GGCCGGCGCCTGCTGGTCCTCAGCAATGACGGCGACAGCCCGGCCGCCATCGCCCGCCTGTTGAGCGCCCGT
GGCTTCGGCGCCAGTCGCCTGAGCGTGCTGGAACACCTCGGCGGGCCGCTCGAGCGCCGTCTCGACGGCCTC
GCCGGCGACTGGTCGCTGCCACGCGCCGCCGATCTCAACCTGGTGGCGGTGGAATGCCGCGCCGGCGCCGGC
GCCGTGCGCCTGCCGCTGACCCCGGGCCTGGCCGACGAGGCCTATCGCCACGACGGCCAGTTGACCAAGCGC
GACGTCCGCGCCGTGACCCTGGCGCGCCTGGCGCCCTGCCCCGGCGAGCTGCTCTGGGACGTCGGCGCCGGC
TGCGGCTCCATCGGCATCGAATGGATGCGCGCGCACCCCAGTTGCCGGGCGATCGCCATCGAAGCCAACGAC
GAGCGCCAGGAACATATCCGCCACAACCGCGACGCCCTCGGCGTACCGTCCCTGCACCTGGTCGCCGGCAGC
GCCCCGGAGGCGCTGCTGGAACTGCCCGAGCCGGACGCCATCTTCATCGGCGGCGGGGTCACCGCCGAGGGC
GTGCTGGAAACCTGCTGGGAGCGCCTGCGGCCCGGCGGCCGCCTGCTCGCCAACGCGGTCACCCTGCAGAGC
GAACGGGTGCTGCTCGACTGGCAGCAACGCCTGGGGGGCGACCTCACCCGCCTCGGCGTCGCCCACGCGCGA
CCGCTGGGCGGTTTCGACACCTGGCGCCAGGCCTTGCCGATCACCCTGCTGGAATTGCGCAAACCCGCCGCC
AGGAAGCCTCCCCGCGATGCGTGA