ViewGene
Locus Name:
GeneID:
Location:

GeneID:1353
TrivialName: PA14_73090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73090
PAO1 Ortholog Locus:PA5542
Sequence Length:1245
Protein Length:414
Start: 6508989
Stop: 6507745
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08927.1|AE004966_9 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 409/414 (98%), Positives = 411/414 (99%)
Sequence:
ATGCGTAGCTGTATATCAGTCTTCCGGCCGGCCCTGCTGGCACTGTTCGTCTCGGCAAGCGGCTCGGCCGGC
GCCGACGCGGCTGTGGAAAACCCGCGGATCGGCCGTGCCGCCGATCTCTATGAACTGATCCCGGAATACCAG
CCGGACACCTACCGGAACATGGACAAGGTCTATCCGACCCGGGTTATCCACAAGGGGACCAAGGTCCGTCCG
CTGCCGGCGGGTGTGGCCATCGCGCCGCGCTACCGGATCGGCGGCGAGGAATACGGCGTCGACGATTTCATG
TGGCGCAACCACGTTGGCGGCGTGCTGGTCCTCAAGGATGGCAAGGTCGCCCTGGAGCGCTACGGCCTGGGC
AACGACGCACGCACGCGCTGGACCTCGTTCTCGGTGGTCAAGTCGATCTCCTCGACCCTGGTGGGCGCCGCC
GTGCAGCAGGGCCTGCTGGCTCTCGACCAGCCTGTGGACAAGTACCTGCCGAGCCTGGCCGGCTCCGCCTAC
CAGGGGGTGACGGTGGAGCAGGTCCTGCAGATGAGTTCCGGGGTCCGCTGGAACGAGACCTATCGCGATCCG
AAGTCCGACCGCCGGCAGATGTTCGACGCCCAGCTCGCCGAACGTCCCGGTGGCATCCTGCGGCTGCTGGCG
AGCCTGCCGCGGCAGTACCCGACCGGTACCCACTTCACCTACAGCACCGGCGAGTCGCACCTGCAGAGCGAG
CTGCTGCACGCGGCGACCCGCATTCCGGTGAGCGACTACCTGTCCGAGCGGATCTGGGCGCGGATGGGCATG
GAGAGCGACGGCTTCTGGCAACTGGAATCGCCGGCCGGGCAAGAGATCGGCAGCAGCGGCTTGAGCGCGACC
CTGCGCGACTATGGCCGCTTCGGCCAGTTCGTCCTCGAGGATGGGGTGATCGATGGCGAACGTATCCTTCCC
GAGGGTTGGGTCGATCGTGCCAGTCGCGTCGAGGCTTCTTCCCACCTGGCCCCGGGCAAGCTCTACGATGGC
GAATACGCGCTCGGCTACGGCTACCAGTGGTGGACCTTCCCGGTGGGCGCCAAGGCCCTGCCCGAGCATGAC
GGCGGGGCCTTCGAAGCCCAGGGCATCTTCGGCCAGTACCTCTACATCAACCGCAAGGAGAAGATCGTGGCG
GTGGTCTGGAGCGCCTGGCCGAAGCCGGAGATGGACGATCGCGAGGAGGAGACCTATGCCTTCCTTGGCGCG
GCGGTGAAAGCCCTGCGCTAG
Translation:
MRSCISVFRPALLALFVSASGSAGADAAVENPRIGRAADLYELIPEYQPDTYRNMDKVYPTRVIHKGTKVRP
LPAGVAIAPRYRIGGEEYGVDDFMWRNHVGGVLVLKDGKVALERYGLGNDARTRWTSFSVVKSISSTLVGAA
VQQGLLALDQPVDKYLPSLAGSAYQGVTVEQVLQMSSGVRWNETYRDPKSDRRQMFDAQLAERPGGILRLLA
SLPRQYPTGTHFTYSTGESHLQSELLHAATRIPVSDYLSERIWARMGMESDGFWQLESPAGQEIGSSGLSAT
LRDYGRFGQFVLEDGVIDGERILPEGWVDRASRVEASSHLAPGKLYDGEYALGYGYQWWTFPVGAKALPEHD
GGAFEAQGIFGQYLYINRKEKIVAVVWSAWPKPEMDDREEETYAFLGAAVKALR*
AnnotationID:1362GeneID:1353
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:17
Gene Name:
Confidence Code:3
GeneProduct:putative beta-lactamase
Cell Localization:()
Synonyms:PA5542
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:putative penicillin binding protein
Functional Category Confidence Code:5
COGs:COG1680,pfam00144
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins 
[Defense mechanisms]
CD-Length = 390 residues,  83.1% aligned
Score =  151 bits (381), Expect = 2e-37
Identities = 102/343 (29%), Positives = 143/343 (41%), Gaps = 49/343 (14%)

pfam00144, Beta-lactamase, Beta-lactamase. 
CD-Length = 324 residues,  98.8% aligned
Score =  135 bits (341), Expect = 9e-33
Identities = 84/347 (24%), Positives = 117/347 (33%), Gaps = 56/347 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2709




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19854




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33256




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1353_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1353
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2462
                           PA5542_tr
                           translation of PA5542
                           414
                           98.79
                           99.27
                           0
                           2137.0
     

     
     
78294
                           gb|AAG08927.1|AE004966_9
                           (AE004966) hypothetical protein PA5542 [Pseudomonas aeruginosa PAO1]
                           414
                           98.79
                           99.27
                           0
                           2137.0
     

     






      

          
GC ORFID: 44355How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5542Glimmer Score: 

          
Start: 5772678Stop: 5771434

          
Length: 1245


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5542 translation of PA5542Homolog Bit Score 827.0

          
Other Homologs:  t_PA5542 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGCTGTATATCAGTCTTCCGGCCGGCCCTGCTGGCACTGTTCGTCTCGGCAAGCGGCTCGGCCGGC 
GCCGACGCGGCTGTGGAAAACCCGCGGATCGGCCGTGCCGCCGATCTCTATGAACTGATCCCGGAATACCAG 
CCGGACACCTACCGGAACATGGACAAGGTCTATCCGACCCGGGTTATCCACAAGGGGACCAAGGTCCGTCCG 
CTGCCGGCGGGTGTGGCCATCGCGCCGCGCTACCGGATCGGCGGCGAGGAATACGGCGTCGACGATTTCATG 
TGGCGCAACCACGTTGGCGGCGTGCTGGTCCTCAAGGATGGCAAGGTCGCCCTGGAGCGCTACGGCCTGGGC 
AACGACGCACGCACGCGCTGGACCTCGTTCTCGGTGGTCAAGTCGATCTCCTCGACCCTGGTGGGCGCCGCC 
GTGCAGCAGGGCCTGCTGGCTCTCGACCAGCCTGTGGACAAGTACCTGCCGAGCCTGGCCGGCTCCGCCTAC 
CAGGGGGTGACGGTGGAGCAGGTCCTGCAGATGAGTTCCGGGGTCCGCTGGAACGAGACCTATCGCGATCCG 
AAGTCCGACCGCCGGCAGATGTTCGACGCCCAGCTCGCCGAACGTCCCGGTGGCATCCTGCGGCTGCTGGCG 
AGCCTGCCGCGGCAGTACCCGACCGGTACCCACTTCACCTACAGCACCGGCGAGTCGCACCTGCAGAGCGAG 
CTGCTGCACGCGGCGACCCGCATTCCGGTGAGCGACTACCTGTCCGAGCGGATCTGGGCGCGGATGGGCATG 
GAGAGCGACGGCTTCTGGCAACTGGAATCGCCGGCCGGGCAAGAGATCGGCAGCAGCGGCTTGAGCGCGACC 
CTGCGCGACTATGGCCGCTTCGGCCAGTTCGTCCTCGAGGATGGGGTGATCGATGGCGAACGTATCCTTCCC 
GAGGGTTGGGTCGATCGTGCCAGTCGCGTCGAGGCTTCTTCCCACCTGGCCCCGGGCAAGCTCTACGATGGC 
GAATACGCGCTCGGCTACGGCTACCAGTGGTGGACCTTCCCGGTGGGCGCCAAGGCCCTGCCCGAGCATGAC 
GGCGGGGCCTTCGAAGCCCAGGGCATCTTCGGCCAGTACCTCTACATCAACCGCAAGGAGAAGATCGTGGCG 
GTGGTCTGGAGCGCCTGGCCGAAGCCGGAGATGGACGATCGCGAGGAGGAGACCTATGCCTTCCTTGGCGCG 
GCGGTGAAAGCCCTGCGCTAG