ViewGene

Locus Name:
GeneID:
Location:

GeneID:1350
TrivialName: PA14_64400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64400
PAO1 Ortholog Locus:PA4869
Sequence Length:1218
Protein Length:405
Start: 5737454
Stop: 5738671
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08254.1|AE004900_8 (AE004900) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 403/405 (99%), Positives = 404/405 (99%)
Sequence:
ATGCTGCGCCAAGCCATCCTCGCGCGCTTTCCGGCGGACTACGAGGTGGAGATCAAGGGCGCCGACCTGCTC
GGCTTCGGCGAGAAATTCCTGGTCGCCTACGGCAATCGGCGCTTCGTCGGCAAGGCCTTCGCCATGGACGAC
CAGGTCATCGAGCGCCTGGAGCGGAACCAGGGACGGACCAACCTGCCGCTGGTGAAGGTGTTCTACATCGCC
GAACCCGGCCTCCTCTCCTCGCTGCTCAACCTCTCCCCGTTCCTGGATATCCAGAAGAACATGGTCGAGCTG
AGCCTCCGGGAATACCGGAAGATCCAGTTGGTCCCCTTCGATCCGGACGCGAAGCGGAAACCGCGCGAGCAG
TTCGAAACCGATTATGCCTTCCCCCAGCTGTTCAGCCTCAGCCAACTGGAAGTCGCCGACTACGACGGCGAC
GGCCGCGACGAACTGCGCCTGGGCTACCTGTCCTACGCCGGCGGTTCGGGAGGGACGCGCTGGTCGGTGATC
TACGACCTGAAGGACGGCGCGCTGACCGCCCATTCCGGCTATCCGGAAATGCTCGACATCGACGTCGCCCGG
TTCATCCAGGCGGTCAACCTGTACGCCGGCCTCGACGGCACCCTGCCGCGCGACCAGCGTCAGCTGGAAGAC
GTGGTCGGCCGAGGCAGCGAGCGCTTCGCGCTGACCGCCGCGGAGCGCCAGGCACTGGTCGCCGACCCGCCG
CAGCGGGACGACTACGCCAGGGTCCTGATGAGCCTTTCGCCGCGCTCGCCCTACGCCCCCGATCGCTTCATC
GACCTCGGCGACGGCAGCCGACTGAGCCTGGCCCCGCGCCATACCGACGATTACTCGACCTTCCTCGACATC
GGCGGGAAGAAAATCTTCGTCGAAGCCTTCTACGTCGACGACGACGCCTGCCACTGGTGCGAGCATCGCTGG
CGAGTGATGGCTTTCCATTACGACGACGGTCGCTGGATCTCGGACCGCACCATCAACGGTGACAGCTTCAAC
GGGCAGTGGCTGCGCAACGCGGAGCCGCTGGGCCTCAACGACGTTTTCGGCACCTACCGCGACCAGGGCCCG
GCGGGCCTGGCCTGGTCCTTCATCGACCCGCGCTGGACCGCCTCCAGCCAGCATGACATGGACGATCCGCTG
GGCGTGGGGATGCGCACCCTGTCGCCGGTGGAGCAATGGGTGAAGGAACGCTATCGGGAAAACTGA
Translation:
MLRQAILARFPADYEVEIKGADLLGFGEKFLVAYGNRRFVGKAFAMDDQVIERLERNQGRTNLPLVKVFYIA
EPGLLSSLLNLSPFLDIQKNMVELSLREYRKIQLVPFDPDAKRKPREQFETDYAFPQLFSLSQLEVADYDGD
GRDELRLGYLSYAGGSGGTRWSVIYDLKDGALTAHSGYPEMLDIDVARFIQAVNLYAGLDGTLPRDQRQLED
VVGRGSERFALTAAERQALVADPPQRDDYARVLMSLSPRSPYAPDRFIDLGDGSRLSLAPRHTDDYSTFLDI
GGKKIFVEAFYVDDDACHWCEHRWRVMAFHYDDGRWISDRTINGDSFNGQWLRNAEPLGLNDVFGTYRDQGP
AGLAWSFIDPRWTASSQHDMDDPLGVGMRTLSPVEQWVKERYREN*
AnnotationID:1359GeneID:1350
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4869
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:2703
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19848
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1350

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2457 PA4869_tr translation of PA4869 405 99.50 99.75 0 2139.0
77971 gb|AAG08254.1|AE004900_8 (AE004900) hypothetical protein PA4869 [Pseudomonas aeruginosa PAO1] 405 99.50 99.75 0 2139.0
GC ORFID: 44352How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4869Glimmer Score:
Start: 5001135Stop: 5002352
Length: 1218
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4869 translation of PA4869Homolog Bit Score 828.0
Other Homologs: t_PA4869 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCGCCAAGCCATCCTCGCGCGCTTTCCGGCGGACTACGAGGTGGAGATCAAGGGCGCCGACCTGCTC
GGCTTCGGCGAGAAATTCCTGGTCGCCTACGGCAATCGGCGCTTCGTCGGCAAGGCCTTCGCCATGGACGAC
CAGGTCATCGAGCGCCTGGAGCGGAACCAGGGACGGACCAACCTGCCGCTGGTGAAGGTGTTCTACATCGCC
GAACCCGGCCTCCTCTCCTCGCTGCTCAACCTCTCCCCGTTCCTGGATATCCAGAAGAACATGGTCGAGCTG
AGCCTCCGGGAATACCGGAAGATCCAGTTGGTCCCCTTCGATCCGGACGCGAAGCGGAAACCGCGCGAGCAG
TTCGAAACCGATTATGCCTTCCCCCAGCTGTTCAGCCTCAGCCAACTGGAAGTCGCCGACTACGACGGCGAC
GGCCGCGACGAACTGCGCCTGGGCTACCTGTCCTACGCCGGCGGTTCGGGAGGGACGCGCTGGTCGGTGATC
TACGACCTGAAGGACGGCGCGCTGACCGCCCATTCCGGCTATCCGGAAATGCTCGACATCGACGTCGCCCGG
TTCATCCAGGCGGTCAACCTGTACGCCGGCCTCGACGGCACCCTGCCGCGCGACCAGCGTCAGCTGGAAGAC
GTGGTCGGCCGAGGCAGCGAGCGCTTCGCGCTGACCGCCGCGGAGCGCCAGGCACTGGTCGCCGACCCGCCG
CAGCGGGACGACTACGCCAGGGTCCTGATGAGCCTTTCGCCGCGCTCGCCCTACGCCCCCGATCGCTTCATC
GACCTCGGCGACGGCAGCCGACTGAGCCTGGCCCCGCGCCATACCGACGATTACTCGACCTTCCTCGACATC
GGCGGGAAGAAAATCTTCGTCGAAGCCTTCTACGTCGACGACGACGCCTGCCACTGGTGCGAGCATCGCTGG
CGAGTGATGGCTTTCCATTACGACGACGGTCGCTGGATCTCGGACCGCACCATCAACGGTGACAGCTTCAAC
GGGCAGTGGCTGCGCAACGCGGAGCCGCTGGGCCTCAACGACGTTTTCGGCACCTACCGCGACCAGGGCCCG
GCGGGCCTGGCCTGGTCCTTCATCGACCCGCGCTGGACCGCCTCCAGCCAGCATGACATGGACGATCCGCTG
GGCGTGGGGATGCGCACCCTGTCGCCGGTGGAGCAATGGGTGAAGGAACGCTATCGGGAAAACTGA