ViewGene
Locus Name:
GeneID:
Location:

GeneID:135
TrivialName: PA14_52600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52600
PAO1 Ortholog Locus:PA0903
Sequence Length:2625
Protein Length:874
Start: 4664773
Stop: 4662149
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04292.1|AE004524_9 (AE004524) alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 872/874 (99%), Positives = 873/874 (99%)
Sequence:
ATGAAAAGCGCTGAAATCCGTGAAGCCTTCCTCCGCTTCTTCGAAGAGAAGGGACACACCCGTGTCGCTTCC
AGTTCGCTGATCCCGGCGAACGATCCGACCCTGCTGTTCACCAACGCGGGCATGAACCAGTTCAAGGACTGC
TTCCTCGGCCTGGAAAAGCGCGCCTACACCCGTGCGACCACCAGCCAGAAATGCGTGCGCGCCGGCGGCAAG
CACAACGACCTGGAAAACGTCGGCTACACCGCGCGGCACCACACCTTCTTCGAAATGCTGGGTAACTTCAGC
TTCGGCGACTATTTCAAGCGCGACGCCATCCATTACGCCTGGGAGTTCCTCACCGGCGAGAAATGGCTGAAC
CTGCCCAAGGAAAAGCTCTGGGTCACCGTCTACGCCACCGACGACGAGGCCTACGACATCTGGACCAAGGAA
GTCGGCGTGCCCGCCGAGCGTATGGTGCGGATCGGCGACAACAAGGGTGCGCCCTATGCGTCCGACAACTTC
TGGGCGATGGGCGATACCGGACCTTGCGGTCCCTGCACCGAGATCTTCTTCGACCATGGTCCGGAGATCTGG
GGCGGCCCGCCCGGTTCGCCGGAAGAGGACGGCGACCGCTACATCGAGATCTGGAACAACGTGTTCATGCAG
TTCAACCGCACTGCGGACGGCGTCATGCACCCGCTGCCGGCGCCGAGCGTGGACACCGGCATGGGCCTGGAG
CGCGTCAGCGCGGTACTCCAGCACGTGCACTCGAACTATGAGATCGACCTGTTCCAGAACCTGCTGAAAGCC
TCCGCCGAGGCCATCGGCTGCGCCAACGACGACGCGCCGTCGCTGAAGGTGGTAGCCGACCACATCCGTTCC
TGCAGCTTCCTGATCGCCGACGGCGTGCTGCCGTCCAACGAAGGTCGCGGCTACGTCTTGCGGCGGATCATC
CGCCGCGCCTGCCGCCACGGCAACAAGCTGGGCGCCAGGGGCACCTTCTTCCACAAGATCGTCGCAGCGCTG
GTCGCCGAGATGGGCGATGCCTTCCCCGAGCTGAAGCAACAGCAGGCACACATCGAGCGCGTGCTGAAGACC
GAGGAAGAGCAGTTCGCCAAAACCCTGGAGCAAGGCCTGAAGATCCTCGAACAGGACCTTGCCGAACTGCAG
GGCAGCGTGATTCCCGGCAACGTGGTGTTCAAGCTGTACGACACCTATGGCTTCCCGGTCGACCTGACCAAT
GACATCGCCCGCGAGCGCGAGCTGACCATCGACGAGGACGGCTTCGAGCGCGAGATGGAGGCCCAGCGCGAG
CGCGCCCGCGCTTCCAGCGCCTTTGGCATGGACTACAACAGCCTGGTCAAGGTCGACGGCGAGACCCGCTTC
CTCGGCTACCAGGGTGTCTCCGGCGCTGGACAGATCGTCGCGCTGTTCAGGGACGGCCAGGCCGTCGAGCGC
CTGGAGGAGGGCGAGGAGGGCGTCGTGGTCCTCGACCAGACGCCGTTCTACGCCGAGTCCGGCGGCCAGGTC
GGCGACAGTGGCTACCTCGAGGCGGCTGGCGTGCGCTTCGACGTGCGCGATACCACCAAGGCCGGCGGCGCG
CACCTGCACCACGGCGTGGTCGCCCGGGGCAACCTGAGCGTTGGCGCCGCGGTCAAGGCCGAGGTCGACGCC
TCGGTACGCCAGGCCACCGCGCTCAACCACTCCGCGACCCACCTGCTGCATGCCGCGCTGCGCCAGGTACTG
GGCGACCACGTACAACAGAAGGGCTCGCTGGTGGACAGCCAGCGCCTGCGTTTCGACTTCAGCCACTTCGAG
GCGATCAAGGCGGAACAACTGAAGGCCCTGGAAGATATCGTCAACGCCGAAATCCGTCGCAACACCGAGGTC
GAGACCGAGGAAACCGATATCGACACCGCCAAGGCCAAGGGCGCCATGGCGCTGTTCGGCGAGAAGTACGGC
GACCAGGTGCGCGTGCTGAGCATGGGCGGCGATTTCTCCGTCGAGCTGTGCGGTGGCACCCACGTATCCCGC
ACCGGCGACATCGGCCTGTTCAAGATCACCAGCGAGGGTGGCGTGGCTGCCGGCGTACGCCGTATCGAGGCG
GTCACCGGCGCGGCGGCGCTGGCCTACCTGAACGGTGCCGAGGAGCAGCTCAAGGAAGCCGCCAGCCTGGTC
AAGGGCAGCCGCGACAACCTGCTGGACAAACTCGGCGCCCTGCTGGAGCGCAACCGCTCGCTGGAGAAGGAG
CTGGAACAGCTCAAGGCCAAGGCTGCCAGCGCGGCCGGCGACGACCTTTCGGCGGCGGCGGTGGAAATCAAG
GGCGCGAAGGTACTCGCCGCGCGCCTCGATGGTCTGGACGGCAAGGCGCTGCTGGCGCTGGTCGACCAGTTG
AAGAACAAGCTCGGCCGCGCAGTGATCCTGCTCGGCGGCGAGCTGGACGGGAAGGTCGTACTGGTCGCAGGC
GTGACCCAGGACCTGACCGGTCAACTGAAGGCCGGCGAGCTTATGAAGCAAGCCGCGGCGGCAGTTGGTGGC
AAAGGTGGCGGACGCCCGGATATGGCCCAGGGCGGCGGCACCAATGCAGCGAAATTGGACGAGGCCCTGGCC
CTGGCCCAGCGCTTCGTCGAGCAAGGGCTCTGA
Translation:
MKSAEIREAFLRFFEEKGHTRVASSSLIPANDPTLLFTNAGMNQFKDCFLGLEKRAYTRATTSQKCVRAGGK
HNDLENVGYTARHHTFFEMLGNFSFGDYFKRDAIHYAWEFLTGEKWLNLPKEKLWVTVYATDDEAYDIWTKE
VGVPAERMVRIGDNKGAPYASDNFWAMGDTGPCGPCTEIFFDHGPEIWGGPPGSPEEDGDRYIEIWNNVFMQ
FNRTADGVMHPLPAPSVDTGMGLERVSAVLQHVHSNYEIDLFQNLLKASAEAIGCANDDAPSLKVVADHIRS
CSFLIADGVLPSNEGRGYVLRRIIRRACRHGNKLGARGTFFHKIVAALVAEMGDAFPELKQQQAHIERVLKT
EEEQFAKTLEQGLKILEQDLAELQGSVIPGNVVFKLYDTYGFPVDLTNDIARERELTIDEDGFEREMEAQRE
RARASSAFGMDYNSLVKVDGETRFLGYQGVSGAGQIVALFRDGQAVERLEEGEEGVVVLDQTPFYAESGGQV
GDSGYLEAAGVRFDVRDTTKAGGAHLHHGVVARGNLSVGAAVKAEVDASVRQATALNHSATHLLHAALRQVL
GDHVQQKGSLVDSQRLRFDFSHFEAIKAEQLKALEDIVNAEIRRNTEVETEETDIDTAKAKGAMALFGEKYG
DQVRVLSMGGDFSVELCGGTHVSRTGDIGLFKITSEGGVAAGVRRIEAVTGAAALAYLNGAEEQLKEAASLV
KGSRDNLLDKLGALLERNRSLEKELEQLKAKAASAAGDDLSAAAVEIKGAKVLAARLDGLDGKALLALVDQL
KNKLGRAVILLGGELDGKVVLVAGVTQDLTGQLKAGELMKQAAAAVGGKGGGRPDMAQGGGTNAAKLDEALA
LAQRFVEQGL*
AnnotationID:145GeneID:135
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 12:12:47
Gene Name:alaS
Confidence Code:2
GeneProduct:alanyl-tRNA synthetase
Cell Localization:(1) Cytoplasmic
Synonyms:sya
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0013, pfam01411, KOG0188
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0013, AlaS, Alanyl-tRNA synthetase.  Score: 1202, 0.0
pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Score: 998, 0.0
KOG0188, Alanyl-tRNA synthetase. Score: 723, 0.0






   
Genomic Context:






   
Comment:


















    ReferenceID:273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16992




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0903_CDS.cgi


    		




 
URL:

















    ReferenceID:17415




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:135
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
248
                           PA0903_tr
                           translation of PA0903
                           874
                           99.77
                           99.88
                           0
                           4470.0
     

     
     
17286
                           gb|AAG04292.1|AE004524_9
                           (AE004524) alanyl-tRNA synthetase [Pseudomonas aeruginosa PAO1]
                           874
                           99.77
                           99.88
                           0
                           4470.0
     

     
     
17287
                           gb|AAN70049.1|AE016644_3
                           (AE016790) alanyl-tRNA synthetase [Pseudomonas putida KT2440]
                           874
                           85.46
                           92.33
                           0
                           3908.0
     

     
     
17288
                           gb|AAO55361.1|
                           (AE016862) alanyl-tRNA synthetase [Pseudomonas syringae pv. tomato str. DC3000]
                           874
                           84.32
                           91.18
                           0
                           3843.0
     

     
     
17289
                           gb|AAL21707.1|
                           (AE008829) alanyl-tRNA synthetase [Salmonella typhimurium LT2]
                           877
                           66.02
                           78.79
                           4
                           3028.0
     

     






      

          
GC ORFID: 43137How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0903Glimmer Score: 

          
Start: 289134Stop: 291758

          
Length: 2625


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0903 translation of PA0903Homolog Bit Score 1726.0

          
Other Homologs:  t_PA0903 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAGCGCTGAAATCCGTGAAGCCTTCCTCCGCTTCTTCGAAGAGAAGGGACACACCCGTGTCGCTTCC 
AGTTCGCTGATCCCGGCGAACGATCCGACCCTGCTGTTCACCAACGCGGGCATGAACCAGTTCAAGGACTGC 
TTCCTCGGCCTGGAAAAGCGCGCCTACACCCGTGCGACCACCAGCCAGAAATGCGTGCGCGCCGGCGGCAAG 
CACAACGACCTGGAAAACGTCGGCTACACCGCGCGGCACCACACCTTCTTCGAAATGCTGGGTAACTTCAGC 
TTCGGCGACTATTTCAAGCGCGACGCCATCCATTACGCCTGGGAGTTCCTCACCGGCGAGAAATGGCTGAAC 
CTGCCCAAGGAAAAGCTCTGGGTCACCGTCTACGCCACCGACGACGAGGCCTACGACATCTGGACCAAGGAA 
GTCGGCGTGCCCGCCGAGCGTATGGTGCGGATCGGCGACAACAAGGGTGCGCCCTATGCGTCCGACAACTTC 
TGGGCGATGGGCGATACCGGACCTTGCGGTCCCTGCACCGAGATCTTCTTCGACCATGGTCCGGAGATCTGG 
GGCGGCCCGCCCGGTTCGCCGGAAGAGGACGGCGACCGCTACATCGAGATCTGGAACAACGTGTTCATGCAG 
TTCAACCGCACTGCGGACGGCGTCATGCACCCGCTGCCGGCGCCGAGCGTGGACACCGGCATGGGCCTGGAG 
CGCGTCAGCGCGGTACTCCAGCACGTGCACTCGAACTATGAGATCGACCTGTTCCAGAACCTGCTGAAAGCC 
TCCGCCGAGGCCATCGGCTGCGCCAACGACGACGCGCCGTCGCTGAAGGTGGTAGCCGACCACATCCGTTCC 
TGCAGCTTCCTGATCGCCGACGGCGTGCTGCCGTCCAACGAAGGTCGCGGCTACGTCTTGCGGCGGATCATC 
CGCCGCGCCTGCCGCCACGGCAACAAGCTGGGCGCCAGGGGCACCTTCTTCCACAAGATCGTCGCAGCGCTG 
GTCGCCGAGATGGGCGATGCCTTCCCCGAGCTGAAGCAACAGCAGGCACACATCGAGCGCGTGCTGAAGACC 
GAGGAAGAGCAGTTCGCCAAAACCCTGGAGCAAGGCCTGAAGATCCTCGAACAGGACCTTGCCGAACTGCAG 
GGCAGCGTGATTCCCGGCAACGTGGTGTTCAAGCTGTACGACACCTATGGCTTCCCGGTCGACCTGACCAAT 
GACATCGCCCGCGAGCGCGAGCTGACCATCGACGAGGACGGCTTCGAGCGCGAGATGGAGGCCCAGCGCGAG 
CGCGCCCGCGCTTCCAGCGCCTTTGGCATGGACTACAACAGCCTGGTCAAGGTCGACGGCGAGACCCGCTTC 
CTCGGCTACCAGGGTGTCTCCGGCGCTGGACAGATCGTCGCGCTGTTCAGGGACGGCCAGGCCGTCGAGCGC 
CTGGAGGAGGGCGAGGAGGGCGTCGTGGTCCTCGACCAGACGCCGTTCTACGCCGAGTCCGGCGGCCAGGTC 
GGCGACAGTGGCTACCTCGAGGCGGCTGGCGTGCGCTTCGACGTGCGCGATACCACCAAGGCCGGCGGCGCG 
CACCTGCACCACGGCGTGGTCGCCCGGGGCAACCTGAGCGTTGGCGCCGCGGTCAAGGCCGAGGTCGACGCC 
TCGGTACGCCAGGCCACCGCGCTCAACCACTCCGCGACCCACCTGCTGCATGCCGCGCTGCGCCAGGTACTG 
GGCGACCACGTACAACAGAAGGGCTCGCTGGTGGACAGCCAGCGCCTGCGTTTCGACTTCAGCCACTTCGAG 
GCGATCAAGGCGGAACAACTGAAGGCCCTGGAAGATATCGTCAACGCCGAAATCCGTCGCAACACCGAGGTC 
GAGACCGAGGAAACCGATATCGACACCGCCAAGGCCAAGGGCGCCATGGCGCTGTTCGGCGAGAAGTACGGC 
GACCAGGTGCGCGTGCTGAGCATGGGCGGCGATTTCTCCGTCGAGCTGTGCGGTGGCACCCACGTATCCCGC 
ACCGGCGACATCGGCCTGTTCAAGATCACCAGCGAGGGTGGCGTGGCTGCCGGCGTACGCCGTATCGAGGCG 
GTCACCGGCGCGGCGGCGCTGGCCTACCTGAACGGTGCCGAGGAGCAGCTCAAGGAAGCCGCCAGCCTGGTC 
AAGGGCAGCCGCGACAACCTGCTGGACAAACTCGGCGCCCTGCTGGAGCGCAACCGCTCGCTGGAGAAGGAG 
CTGGAACAGCTCAAGGCCAAGGCTGCCAGCGCGGCCGGCGACGACCTTTCGGCGGCGGCGGTGGAAATCAAG 
GGCGCGAAGGTACTCGCCGCGCGCCTCGATGGTCTGGACGGCAAGGCGCTGCTGGCGCTGGTCGACCAGTTG 
AAGAACAAGCTCGGCCGCGCAGTGATCCTGCTCGGCGGCGAGCTGGACGGGAAGGTCGTACTGGTCGCAGGC 
GTGACCCAGGACCTGACCGGTCAACTGAAGGCCGGCGAGCTTATGAAGCAAGCCGCGGCGGCAGTTGGTGGC 
AAAGGTGGCGGACGCCCGGATATGGCCCAGGGCGGCGGCACCAATGCAGCGAAATTGGACGAGGCCCTGGCC 
CTGGCCCAGCGCTTCGTCGAGCAAGGGCTCTGA