ViewGene
Locus Name:
GeneID:
Location:

GeneID:1349
TrivialName: PA14_16450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16450
PAO1 Ortholog Locus:PA3706
Sequence Length:1269
Protein Length:422
Start: 1407790
Stop: 1409058
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07093.1|AE004789_13 (AE004789) probable protein methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 420/422 (99%), Positives = 421/422 (99%)
Sequence:
ATGAACGATCGCTTCGAACGCCTGCTCAAGAGCAGGATCGGCCTGGATGCCAGCTCGGTGGGCAGCGCGGTG
ATCGAGCGCGCGGTACGCCAGCGCATGAGCGGCCTCGCGCTGCACGACGAGGACGAATACTGGATGCGCCTG
AACGGCTCGCCGGGCGAGGTGCAGACGCTGATCGAAGCGGTGGTGGTGCCGGAGACCTGGTTCTTCCGCTAC
CCGGAGTCGTTCACCACCCTCGCCAGGCTGGCCTTCGAGCGCCTGCCGAGCCTGGGCGGCGGACGCGCGCTA
AGGATCCTCAGCCTGCCCTGTTCCACCGGCGAGGAGCCGTATTCCATCGTCATGGCCTTGCTCGATGCCGGG
CTCTCCGAGTACCTGTTCGAGGTCGACGCCCTGGACGTCAGCGCTCGGGTGATCGAGCGCGCCAGCCTCGGG
GTGTACGGCAGGAATTCCTTTCGCGGCGATGAACTGGGGTTTCGCGACCGCCATTTCAGCGAGGTTGCCGAT
GGCTACCAGTTGGCCGAGCAGGTTCGCCGCAAGGTGCGCTTCCGCTGCGGCAATTTGCTCGATCCCGGGCTA
CTGGCGGGCGAGGCACCCTACGATTTCGTGTTCTGTCGCAACCTGCTGATCTATTTCGACCGCCCGACCCAG
AGCGAGGTGGTCGAGGTGCTCAAGCGCCTGTTGCGGCCGGACGGCGCGATGTTCATCGGACCAGCCGAGGCG
AGCCTGCTCAGCCAGCATGGCATGCAGCCGATCGGCGTGCCGCTGTCTTTCGTGTTCCGCCGGACCAGCGAG
GCGCCCCGCGGCGCGCGGCCCAAAGCGGTGAGCGACGGAGCGCGCCCGGTCGTTGCCGCCGCCGTGGAGCGT
GCGAGTATTCGGCCTTCGCCGCCGCCACCGGCGAAACCGCGCCAGCGGCTGTCCAGCCTGGTTCCGCCAGCC
AGCGGCCAGCCCCTCGCCAGTCCCGTCGGCGAGTTCGACGAAATCGCCCGCCTGGCGGATGCCGGCCAGCAC
CGCGAGGCGCGCGCCGCCTGCGAGCGCCAACTGGCCGCGCGTGGGCCGTCGGCCACGGTCTTCTACTGGCTC
GGGCTGCTCAGCGATGTCGCCGGGCAGGAGCAGGAAGCCCAGGATTTCTACCGCAAGGCCCTGTACCTGGAG
CCGCAGCACGCCGAGGCGCTGGCGCACCTGGCGGCGCTGCTCGCCGCTCGCGGCGACCATGCCGGCGCCCGG
CGCCTGCAGCAACGTGCGGCCCGTGGAGTGAACAAAGATGGTTGA
Translation:
MNDRFERLLKSRIGLDASSVGSAVIERAVRQRMSGLALHDEDEYWMRLNGSPGEVQTLIEAVVVPETWFFRY
PESFTTLARLAFERLPSLGGGRALRILSLPCSTGEEPYSIVMALLDAGLSEYLFEVDALDVSARVIERASLG
VYGRNSFRGDELGFRDRHFSEVADGYQLAEQVRRKVRFRCGNLLDPGLLAGEAPYDFVFCRNLLIYFDRPTQ
SEVVEVLKRLLRPDGAMFIGPAEASLLSQHGMQPIGVPLSFVFRRTSEAPRGARPKAVSDGARPVVAAAVER
ASIRPSPPPPAKPRQRLSSLVPPASGQPLASPVGEFDEIARLADAGQHREARAACERQLAARGPSATVFYWL
GLLSDVAGQEQEAQDFYRKALYLEPQHAEALAHLAALLAARGDHAGARRLQQRAARGVNKDG*
AnnotationID:1358GeneID:1349
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 14:02:06
Gene Name:wspC
Confidence Code:3
GeneProduct:putative chemotaxis protein methyltransferase CheR
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1352,smart00138,pfam01739
Secondary Functional Category(ies):Chemotaxis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO92335.1| (AY074937) WspC [Pseudomonas fluorescens]
          Length = 419

 Score =  446 bits (1146), Expect = e-124
 Identities = 245/419 (58%), Positives = 286/419 (68%), Gaps = 11/419 (2%)

>gb|AAO55016.1| (AE016861) chemotaxis protein methyltransferase CheR, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 426

 Score =  445 bits (1145), Expect = e-124
 Identities = 240/424 (56%), Positives = 287/424 (67%), Gaps = 7/424 (1%)






 
Structural Features:
COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 268 residues,  98.1% aligned
Score =  246 bits (630), Expect = 6e-66
Identities = 91/265 (34%), Positives = 137/265 (51%), Gaps = 6/265 (2%)

smart00138, MeTrc, Methyltransferase, chemotaxis proteins
CD-Length = 264 residues,  96.6% aligned
Score =  172 bits (438), Expect = 1e-43
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 7/257 (2%)

pfam01739, CheR, CheR methyltransferase, SAM binding domain.
CD-Length = 195 residues,  97.9% aligned
Score =  142 bits (359), Expect = 2e-34
Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 5/193 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2701




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19846




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31845




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1349_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1349
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2456
                           PA3706_tr
                           translation of PA3706
                           422
                           99.52
                           99.76
                           0
                           2140.0
     

     
     
77964
                           gb|AAG07093.1|AE004789_13
                           (AE004789) probable protein methyltransferase [Pseudomonas aeruginosa PAO1]
                           422
                           99.52
                           99.76
                           0
                           2140.0
     

     
     
77965
                           gb|AAO92335.1|
                           (AY074937) WspC [Pseudomonas fluorescens]
                           438
                           56.84
                           65.75
                           35
                           1167.0
     

     
     
77966
                           gb|AAO55016.1|
                           (AE016861) chemotaxis protein methyltransferase CheR, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           436
                           55.96
                           66.05
                           24
                           1153.0
     

     
     
77967
                           gb|AAN67112.1|AE016340_3
                           (AE016779) methyltransferase, CheR-like [Pseudomonas putida KT2440]
                           435
                           54.02
                           66.89
                           24
                           1111.0
     

     






      

          
GC ORFID: 44351How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3706Glimmer Score: 

          
Start: 3546147Stop: 3544879

          
Length: 1269


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3706 translation of PA3706Homolog Bit Score 828.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4583 (ORF: BLASTX 431.0), t_PA3706 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATCGCTTCGAACGCCTGCTCAAGAGCAGGATCGGCCTGGATGCCAGCTCGGTGGGCAGCGCGGTG 
ATCGAGCGCGCGGTACGCCAGCGCATGAGCGGCCTCGCGCTGCACGACGAGGACGAATACTGGATGCGCCTG 
AACGGCTCGCCGGGCGAGGTGCAGACGCTGATCGAAGCGGTGGTGGTGCCGGAGACCTGGTTCTTCCGCTAC 
CCGGAGTCGTTCACCACCCTCGCCAGGCTGGCCTTCGAGCGCCTGCCGAGCCTGGGCGGCGGACGCGCGCTA 
AGGATCCTCAGCCTGCCCTGTTCCACCGGCGAGGAGCCGTATTCCATCGTCATGGCCTTGCTCGATGCCGGG 
CTCTCCGAGTACCTGTTCGAGGTCGACGCCCTGGACGTCAGCGCTCGGGTGATCGAGCGCGCCAGCCTCGGG 
GTGTACGGCAGGAATTCCTTTCGCGGCGATGAACTGGGGTTTCGCGACCGCCATTTCAGCGAGGTTGCCGAT 
GGCTACCAGTTGGCCGAGCAGGTTCGCCGCAAGGTGCGCTTCCGCTGCGGCAATTTGCTCGATCCCGGGCTA 
CTGGCGGGCGAGGCACCCTACGATTTCGTGTTCTGTCGCAACCTGCTGATCTATTTCGACCGCCCGACCCAG 
AGCGAGGTGGTCGAGGTGCTCAAGCGCCTGTTGCGGCCGGACGGCGCGATGTTCATCGGACCAGCCGAGGCG 
AGCCTGCTCAGCCAGCATGGCATGCAGCCGATCGGCGTGCCGCTGTCTTTCGTGTTCCGCCGGACCAGCGAG 
GCGCCCCGCGGCGCGCGGCCCAAAGCGGTGAGCGACGGAGCGCGCCCGGTCGTTGCCGCCGCCGTGGAGCGT 
GCGAGTATTCGGCCTTCGCCGCCGCCACCGGCGAAACCGCGCCAGCGGCTGTCCAGCCTGGTTCCGCCAGCC 
AGCGGCCAGCCCCTCGCCAGTCCCGTCGGCGAGTTCGACGAAATCGCCCGCCTGGCGGATGCCGGCCAGCAC 
CGCGAGGCGCGCGCCGCCTGCGAGCGCCAACTGGCCGCGCGTGGGCCGTCGGCCACGGTCTTCTACTGGCTC 
GGGCTGCTCAGCGATGTCGCCGGGCAGGAGCAGGAAGCCCAGGATTTCTACCGCAAGGCCCTGTACCTGGAG 
CCGCAGCACGCCGAGGCGCTGGCGCACCTGGCGGCGCTGCTCGCCGCTCGCGGCGACCATGCCGGCGCCCGG 
CGCCTGCAGCAACGTGCGGCCCGTGGAGTGAACAAAGATGGTTGA