ViewGene
Locus Name:
GeneID:
Location:

GeneID:1348
TrivialName: PA14_31580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31580
PAO1 Ortholog Locus:PA2550
Sequence Length:1230
Protein Length:409
Start: 2744407
Stop: 2745636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05938.1|AE004683_2 (AE004683) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 408/409 (99%), Positives = 409/409 (100%)
Sequence:
ATGGATTTCGCCTATTCCCCCAAGGTCCAGGAGCTGCGTGAACGTGTCAGCGCGTTCATGGAAGCGCATGTC
TATCCCGCCGAGGCCGTGTTCGAGCGCCAGGTCGCCGAGGGCGACCGCTGGCAGCCGACGGCGATCATGGAA
GAGCTGAAGGCCAAGGCCAAGGCCGAAGGGCTGTGGAACCTGTTCCTGCCCGAGTCCGAGTATGGTGCCGGG
CTGGCCAACCACGAATACGCGCCGCTGGCGGAAATCATGGGCCGTTCGCTGATCGGGCCGGAACCCTTCAAC
TGCGCCGCGCCGGATACCGGCAACATGGAGGTGCTGGTGCGCTACGGCAGCGAGGAGCAGAAGCGCACCTGG
CTGGAACCGCTGCTGAGCGGCGAGATCCGCTCGGCCTTCGCCATGACCGAACCGGGCGTGGCCTCGTCCGAC
GCCACCAATATGGAGGCGCGCGCCGAGCGCCAGGGCAACGACTGGGTGATCAACGGGCGCAAGTGGTGGACT
TCCGGCGCCTGCGATCCGCGCTGCAAGATCCTGATCTTCATGGGCCTGACCAACCCGGACGCGCCGCGCCAC
CAGCAGCACTCGATGATCCTGGTACCGGTCGACACCCCCGGGGTGAAGATCCTCCGTCCGCTGCCGGTGTTC
GGCTACGACGACGCGCCGCATGGCCATGCCGAAGTGCTGTTCGAGAACGTGCGGGTGCCCTACGAGAACGTC
ATCCTCGGCGAGGGCCGCGGTTTCGAGATCGCCCAGGGGCGCCTCGGCCCGGGCCGCATCCACCACTGCATG
CGCTCCATCGGCATGGCCGAGCGCGCCCTCGAACTGATGTGCAAGCGCGCGGTCAGCCGTACCGCGTTCGGC
AAGCCGCTGGCGCGCCTGGGCGGCAACATCGACCACATCGCCGACTCGCGGATGGAGATCAACATGGCACGC
CTGCTGACCCTGCAGGCCGCCTACATGATGGATACCGTGGGCAACAAGATCGCCCAGAGCGAAATCGCCCAG
ATCAAGGTGGTGGCGCCCAACGTGGCGTTGAAGGTGATCGACCGGGCGATCCAGATGCACGGTGGCGCCGGG
GTTTCCAACGACTTCCCGCTGGCCTACTGGTACGCCATGCAGCGCACCCTGCGCCTGGCCGACGGTCCGGAC
GAGGTGCACCGCGCGGCGATCGGCAAGTTCGAGCTGGGCAAGTACGTGCCCAGGGAGATGCTGCGCAGCAGC
CGCTGA
Translation:
MDFAYSPKVQELRERVSAFMEAHVYPAEAVFERQVAEGDRWQPTAIMEELKAKAKAEGLWNLFLPESEYGAG
LANHEYAPLAEIMGRSLIGPEPFNCAAPDTGNMEVLVRYGSEEQKRTWLEPLLSGEIRSAFAMTEPGVASSD
ATNMEARAERQGNDWVINGRKWWTSGACDPRCKILIFMGLTNPDAPRHQQHSMILVPVDTPGVKILRPLPVF
GYDDAPHGHAEVLFENVRVPYENVILGEGRGFEIAQGRLGPGRIHHCMRSIGMAERALELMCKRAVSRTAFG
KPLARLGGNIDHIADSRMEINMARLLTLQAAYMMDTVGNKIAQSEIAQIKVVAPNVALKVIDRAIQMHGGAG
VSNDFPLAYWYAMQRTLRLADGPDEVHRAAIGKFELGKYVPREMLRSSR*
AnnotationID:1357GeneID:1348
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 22:10:45
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA2550
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01155,cd00567,cd01158
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68049.1|AE016437_6 (AE016783) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 414

 Score =  753 bits (1945), Expect = 0.0
 Identities = 365/409 (89%), Positives = 389/409 (95%)

>gb|AAO56246.1| (AE016865) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 409

 Score =  748 bits (1931), Expect = 0.0
 Identities = 360/407 (88%), Positives = 388/407 (95%)

>emb|CAD15722.1| (AL646067) PROBABLE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 420

 Score =  543 bits (1399), Expect = e-154
 Identities = 276/407 (67%), Positives = 314/407 (77%), Gaps = 5/407 (1%)






 
Structural Features:
cd01155, ACAD_FadE2, FadE2-like Acyl-CoA dehydrogenase (ACAD)
CD-Length = 394 residues, 100.0% aligned
Score =  682 bits (1762), Expect = 0.0

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD).
CD-Length = 369 residues,  99.2% aligned
Score =  275 bits (705), Expect = 6e-75

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  98.1% aligned
Score =  198 bits (504), Expect = 1e-51






   
Genomic Context:






   
Comment:


















    ReferenceID:2699




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19844




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33124




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1348_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1348
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2455
                           PA2550_tr
                           translation of PA2550
                           409
                           99.75
                           99.99
                           0
                           2140.0
     

     
     
77943
                           gb|AAG05938.1|AE004683_2
                           (AE004683) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           409
                           99.75
                           99.99
                           0
                           2140.0
     

     
     
77944
                           gb|AAN68049.1|AE016437_6
                           (AE016783) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           414
                           88.16
                           93.96
                           5
                           1945.0
     

     
     
77945
                           gb|AAO56246.1|
                           (AE016865) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           409
                           88.01
                           94.86
                           0
                           1929.0
     

     
     
77946
                           emb|CAD15722.1|
                           (AL646067) PROBABLE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           421
                           65.79
                           75.29
                           13
                           1396.0
     

     






      

          
GC ORFID: 44350How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2550Glimmer Score: 

          
Start: 2209519Stop: 2208290

          
Length: 1230


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2550 translation of PA2550Homolog Bit Score 828.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8127 (ORF: BLASTX 736.0), t_PA2550 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTTCGCCTATTCCCCCAAGGTCCAGGAGCTGCGTGAACGTGTCAGCGCGTTCATGGAAGCGCATGTC 
TATCCCGCCGAGGCCGTGTTCGAGCGCCAGGTCGCCGAGGGCGACCGCTGGCAGCCGACGGCGATCATGGAA 
GAGCTGAAGGCCAAGGCCAAGGCCGAAGGGCTGTGGAACCTGTTCCTGCCCGAGTCCGAGTATGGTGCCGGG 
CTGGCCAACCACGAATACGCGCCGCTGGCGGAAATCATGGGCCGTTCGCTGATCGGGCCGGAACCCTTCAAC 
TGCGCCGCGCCGGATACCGGCAACATGGAGGTGCTGGTGCGCTACGGCAGCGAGGAGCAGAAGCGCACCTGG 
CTGGAACCGCTGCTGAGCGGCGAGATCCGCTCGGCCTTCGCCATGACCGAACCGGGCGTGGCCTCGTCCGAC 
GCCACCAATATGGAGGCGCGCGCCGAGCGCCAGGGCAACGACTGGGTGATCAACGGGCGCAAGTGGTGGACT 
TCCGGCGCCTGCGATCCGCGCTGCAAGATCCTGATCTTCATGGGCCTGACCAACCCGGACGCGCCGCGCCAC 
CAGCAGCACTCGATGATCCTGGTACCGGTCGACACCCCCGGGGTGAAGATCCTCCGTCCGCTGCCGGTGTTC 
GGCTACGACGACGCGCCGCATGGCCATGCCGAAGTGCTGTTCGAGAACGTGCGGGTGCCCTACGAGAACGTC 
ATCCTCGGCGAGGGCCGCGGTTTCGAGATCGCCCAGGGGCGCCTCGGCCCGGGCCGCATCCACCACTGCATG 
CGCTCCATCGGCATGGCCGAGCGCGCCCTCGAACTGATGTGCAAGCGCGCGGTCAGCCGTACCGCGTTCGGC 
AAGCCGCTGGCGCGCCTGGGCGGCAACATCGACCACATCGCCGACTCGCGGATGGAGATCAACATGGCACGC 
CTGCTGACCCTGCAGGCCGCCTACATGATGGATACCGTGGGCAACAAGATCGCCCAGAGCGAAATCGCCCAG 
ATCAAGGTGGTGGCGCCCAACGTGGCGTTGAAGGTGATCGACCGGGCGATCCAGATGCACGGTGGCGCCGGG 
GTTTCCAACGACTTCCCGCTGGCCTACTGGTACGCCATGCAGCGCACCCTGCGCCTGGCCGACGGTCCGGAC 
GAGGTGCACCGCGCGGCGATCGGCAAGTTCGAGCTGGGCAAGTACGTGCCCAGGGAGATGCTGCGCAGCAGC 
CGCTGA