ViewGene
Locus Name:
GeneID:
Location:

GeneID:1347
TrivialName: PA14_45030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45030
PAO1 Ortholog Locus:PA1499
Sequence Length:1266
Protein Length:421
Start: 4016053
Stop: 4017318
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04888.1|AE004578_10 (AE004578) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 418/421 (99%), Positives = 419/421 (99%)
Sequence:
ATGAGTACCGATCCACGCGCCTTTCTCACCGAGCTGTTCAATACCGCGGTGGCAGCCGGCCATCCCTACCAG
GTGCTGGCCGACCACCTGCCGGAAGATCGCAGCGGACGCGCCATCGTCATCGGTGCCGGCAAGGCCGCCGGA
GCCATGGCCGAAGTGGTGGAGAAGCACTGGCAGGGCGAGATCCAGGGCCTGGTAGTGGCGCCTTACCGCTAC
GGCGCGCAATGCAGTCGCATCGAGGTGGTGGAAGCCTCCCATCCGGTGCCCGACGACGCCGGCGAGCGCGTC
GCCCGTCGCGTGCTGGAACTGATCAGCGGCCTGAACGAGAGCGACCGGGTGATCTTCCTTCTCTCCGGCGGC
GGCTCCGCACTGCTTTCGCTGCCTGCCGAAGGCATCGGCCTGGCGGACAAGCAGGCGGTGAACAAGGCGCTG
CTCAAGTCCGGCGCCGCCATCGGCGAGATGAACTGCGTGCGCAAGCACCTCTCGGCGATCAAGGGCGGTCGC
CTGGCCAAGGCCTGCTGGCCGGCCAGCGTCTATACCTACGCGATTTCCGACGTTCCCGGCGACGAGGCCACG
GTGATCGCCTCCGGCCCCAGCGTCGGCGACCCGACCACCTCCGCCGACGCCCTGGCGATCCTCAGGCGCTAC
GCCATCGACGTACCGCAGAACGTCCTCGACTGGCTCGCCGACCCGCGTTCGGAAACCGTAAAGCCCGACGAC
CCGTGCCTGGCGCGCAGCCACTTCCAGTTGATCGCCACGCCACAGAACGCCCTCGACGCAGCAGCGGTGAAG
TGCCGCGCGGCCGGCTTCTCGACGCTGATCCTCGGCGACCTGGAGGGCGAGGCGCGGGAAGTCGCCAAGGTC
CACGCCGGCATCGCCCGGCAGATCCGCAAGCACGGCCAGCCGCTGGCGGCGCCCTGCGTGATCCTCTCCGGC
GGCGAGACCACCGTCACCGTGCGCGGCAACGGTCGCGGCGGACGCAACGCCGAGTTCCTCCTCAGCCTCACC
GCCGAGCTAAAGGGCGAACCGAACATCTGGGCCCTGGCCGGCGACACCGACGGCATCGACGGCTCGGAAGAC
AACGCCGGCGCGCTGATGACGCCCTGCTCCCATGCGCGCGGCGAAAAGGCCGGGCTGAAGATCCGCGACGAG
CTCGACGACAACAACGGCTACGGCTATTTCCAGACCCTCGGCGACCTGCTGGTGACCGGACCGACCCGCACC
AACGTGAACGACTTCCGCGCCATTCTCATCCTCGAGTCCTGA
Translation:
MSTDPRAFLTELFNTAVAAGHPYQVLADHLPEDRSGRAIVIGAGKAAGAMAEVVEKHWQGEIQGLVVAPYRY
GAQCSRIEVVEASHPVPDDAGERVARRVLELISGLNESDRVIFLLSGGGSALLSLPAEGIGLADKQAVNKAL
LKSGAAIGEMNCVRKHLSAIKGGRLAKACWPASVYTYAISDVPGDEATVIASGPSVGDPTTSADALAILRRY
AIDVPQNVLDWLADPRSETVKPDDPCLARSHFQLIATPQNALDAAAVKCRAAGFSTLILGDLEGEAREVAKV
HAGIARQIRKHGQPLAAPCVILSGGETTVTVRGNGRGGRNAEFLLSLTAELKGEPNIWALAGDTDGIDGSED
NAGALMTPCSHARGEKAGLKIRDELDDNNGYGYFQTLGDLLVTGPTRTNVNDFRAILILES*
AnnotationID:1356GeneID:1347
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxypyruvate reductase
Cell Localization:()
Synonyms:ttuD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:putative glycerate kinase
Functional Category Confidence Code:5
COGs:COG2379
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69880.1|AE016627_2 (AE016790) hydroxypyruvate reductase, putative [Pseudomonas putida
           KT2440]
          Length = 424

 Score =  649 bits (1674), Expect = 0.0
 Identities = 329/421 (78%), Positives = 361/421 (85%)

>emb|CAD18600.1| (AL646084) PROBABLE HYDROXYPYRUVATE REDUCTASE OXIDOREDUCTASE
           PROTEIN [Ralstonia solanacearum]
          Length = 446

 Score =  473 bits (1216), Expect = e-132
 Identities = 246/416 (59%), Positives = 299/416 (71%), Gaps = 1/416 (0%)

>emb|CAC49785.1| (AL603646) putative hydroxypyruvate reductase protein
           [Sinorhizobium meliloti]
          Length = 422

 Score =  409 bits (1051), Expect = e-113
 Identities = 215/416 (51%), Positives = 277/416 (66%), Gaps = 1/416 (0%)









 
Structural Features:
COG2379, GckA, Putative glycerate kinase 
[Carbohydrate transport and metabolism]
CD-Length = 422 residues,  99.5% aligned
Score =  563 bits (1452), Expect = 1e-161
Identities = 252/420 (60%), Positives = 302/420 (71%), Gaps = 2/420 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2697




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19842




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37338




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1347_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1347
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2454
                           PA1499_tr
                           translation of PA1499
                           421
                           99.28
                           99.52
                           0
                           2140.0
     

     
     
77920
                           gb|AAG04888.1|AE004578_10
                           (AE004578) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           421
                           99.28
                           99.52
                           0
                           2140.0
     

     
     
77921
                           gb|AAN69880.1|AE016627_2
                           (AE016790) hydroxypyruvate reductase, putative [Pseudomonas putida KT2440]
                           424
                           77.59
                           85.14
                           3
                           1674.0
     

     
     
77923
                           gb|AAQ61322.1|
                           (AE016923) hydroxypyruvate reductase [Chromobacterium violaceum ATCC 12472]
                           423
                           57.91
                           70.21
                           5
                           1185.0
     

     
     
77922
                           emb|CAD18600.1|
                           (AL646084) PROBABLE HYDROXYPYRUVATE REDUCTASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           446
                           55.15
                           67.04
                           25
                           1209.0
     

     






      

          
GC ORFID: 44349How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1499Glimmer Score: 

          
Start: 937856Stop: 936591

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1499 translation of PA1499Homolog Bit Score 828.0

          
Other Homologs:  t_PA1499 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTACCGATCCACGCGCCTTTCTCACCGAGCTGTTCAATACCGCGGTGGCAGCCGGCCATCCCTACCAG 
GTGCTGGCCGACCACCTGCCGGAAGATCGCAGCGGACGCGCCATCGTCATCGGTGCCGGCAAGGCCGCCGGA 
GCCATGGCCGAAGTGGTGGAGAAGCACTGGCAGGGCGAGATCCAGGGCCTGGTAGTGGCGCCTTACCGCTAC 
GGCGCGCAATGCAGTCGCATCGAGGTGGTGGAAGCCTCCCATCCGGTGCCCGACGACGCCGGCGAGCGCGTC 
GCCCGTCGCGTGCTGGAACTGATCAGCGGCCTGAACGAGAGCGACCGGGTGATCTTCCTTCTCTCCGGCGGC 
GGCTCCGCACTGCTTTCGCTGCCTGCCGAAGGCATCGGCCTGGCGGACAAGCAGGCGGTGAACAAGGCGCTG 
CTCAAGTCCGGCGCCGCCATCGGCGAGATGAACTGCGTGCGCAAGCACCTCTCGGCGATCAAGGGCGGTCGC 
CTGGCCAAGGCCTGCTGGCCGGCCAGCGTCTATACCTACGCGATTTCCGACGTTCCCGGCGACGAGGCCACG 
GTGATCGCCTCCGGCCCCAGCGTCGGCGACCCGACCACCTCCGCCGACGCCCTGGCGATCCTCAGGCGCTAC 
GCCATCGACGTACCGCAGAACGTCCTCGACTGGCTCGCCGACCCGCGTTCGGAAACCGTAAAGCCCGACGAC 
CCGTGCCTGGCGCGCAGCCACTTCCAGTTGATCGCCACGCCACAGAACGCCCTCGACGCAGCAGCGGTGAAG 
TGCCGCGCGGCCGGCTTCTCGACGCTGATCCTCGGCGACCTGGAGGGCGAGGCGCGGGAAGTCGCCAAGGTC 
CACGCCGGCATCGCCCGGCAGATCCGCAAGCACGGCCAGCCGCTGGCGGCGCCCTGCGTGATCCTCTCCGGC 
GGCGAGACCACCGTCACCGTGCGCGGCAACGGTCGCGGCGGACGCAACGCCGAGTTCCTCCTCAGCCTCACC 
GCCGAGCTAAAGGGCGAACCGAACATCTGGGCCCTGGCCGGCGACACCGACGGCATCGACGGCTCGGAAGAC 
AACGCCGGCGCGCTGATGACGCCCTGCTCCCATGCGCGCGGCGAAAAGGCCGGGCTGAAGATCCGCGACGAG 
CTCGACGACAACAACGGCTACGGCTATTTCCAGACCCTCGGCGACCTGCTGGTGACCGGACCGACCCGCACC 
AACGTGAACGACTTCCGCGCCATTCTCATCCTCGAGTCCTGA