ViewGene
Locus Name:
GeneID:
Location:

GeneID:1346
TrivialName: PA14_53380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53380
PAO1 Ortholog Locus:PA0842
Sequence Length:1221
Protein Length:406
Start: 4733076
Stop: 4734296
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04231.1|AE004519_2 (AE004519) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 406/406 (100%), Positives = 406/406 (100%)
Sequence:
ATGAGCAGACCTCTAAGCATCGCCCTGATCAGCGAAACCTACCCACCGGAAGTCAACGGCGTCGCCAATACC
CTGGGTCGCCTGCATGCCGGTCTCCAGCAGCTTGGCCATCGGGTTCAGGTGGTGCGCCCGCGCCAGCCCGGC
GACGACGGCCGGCGCAGCGACGCCGAGCTGGTGCTGACCCGCGGCTGGCCGTTGCCCGGCTACCCCGGCCTG
CAATGGGGCATGTCGAGCCTGCACAAGCTGCTGCGCTGCTGGAAGCGCCAGCGCCCGGACGTGCTCTACATC
GCCACCGAAGGCCCGCTCGGCTTCTCTGCCCTGCGCGCCGCGCGGCGCCTGGGCATCCCGGCGGTCAGCGGC
TTCCACACCAACTTCCAGCAGTACAGCGAGCACTACGGCTTCGGTCCGCTGACCCGGCTGGTCACCGGCTAC
CTGCGCTGGTTCCACAACCGCACGCAGATGACCCTGGTGCCCAGCGGCAGCCAGCGCATGGAATTGCAACGG
CGCGGTTTCGAACGCCTCAACCTGCTCTCCCGCGGGGTCGACAGCCAACTCTTCCATCCCTCCCGGCGCGAT
CCCGAACTACGCCGGCGCTGGGGCCTGGGCGAACAGGACATCGCCGTGCTGCACGTCGGCCGGCTGGCGGCG
GAGAAGAACCTCGGCCTGCTCGGCGGCACCTTCCGCGCGCTCTGCGCTGCCCATCCGCAGCTGAAGCTGCGC
CTGGTACTGGTGGGCGACGGGCCGGAGCGCAAGCACCTCGAACGGGACCTGCCCGAAGCGCTGTTCTGCGGC
GTCCAGCGCGGCGAAACCCTGGCCGCCCACTACGCCTCGGGCGACCTGTTCCTCTTCCCAAGCCTGTCGGAG
ACCTTCGGCAACGTGGTCCTCGAAGCCCAGGCCGCCGGCCTCGCGGTGGTCGCCTTCGACCAGGCCGCCGCC
GGCCAGCACATCCGCCATGGGCACAACGGCGTGCTCGCCGCGCCGGGCGACAAGAGCGGCTTCGTCGAAGTC
GCCAGTTGGCTGCTGGACGACCAGGAACGCCTGCGCCGGGTCCGTCTCAACGCCCGCCAGCACGCCAGCCGG
CAAGGTTGGGACAGCATCGTCGAGCACTTCCAGAACTACCTGGAGGACGCCTGCGCCAGTCCGCTGGTCCAG
CCCGCTCGGTCGAAGCCCGAGCGGCCGCCGGCGGAGGATGGCGGGGCCTTGCCACGCAGCCGCGAGTAG
Translation:
MSRPLSIALISETYPPEVNGVANTLGRLHAGLQQLGHRVQVVRPRQPGDDGRRSDAELVLTRGWPLPGYPGL
QWGMSSLHKLLRCWKRQRPDVLYIATEGPLGFSALRAARRLGIPAVSGFHTNFQQYSEHYGFGPLTRLVTGY
LRWFHNRTQMTLVPSGSQRMELQRRGFERLNLLSRGVDSQLFHPSRRDPELRRRWGLGEQDIAVLHVGRLAA
EKNLGLLGGTFRALCAAHPQLKLRLVLVGDGPERKHLERDLPEALFCGVQRGETLAAHYASGDLFLFPSLSE
TFGNVVLEAQAAGLAVVAFDQAAAGQHIRHGHNGVLAAPGDKSGFVEVASWLLDDQERLRRVRLNARQHASR
QGWDSIVEHFQNYLEDACASPLVQPARSKPERPPAEDGGALPRSRE*
AnnotationID:1355GeneID:1346
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 16:04:18
Gene Name:
Confidence Code:3
GeneProduct:probable glycosyl transferase
Cell Localization:()
Synonyms:PA0842
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0438, pfam00534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis...  Score: 141, 3e-34
pfam00534, Glycos_transf_1, Glycosyl transferases group 1. Score: 106, 7e-24






   
Genomic Context:






   
Comment:


















    ReferenceID:2695




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19840




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1346
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2453
                           PA0842_tr
                           translation of PA0842
                           406
                           99.99
                           99.99
                           0
                           2138.0
     

     
     
77915
                           gb|AAG04231.1|AE004519_2
                           (AE004519) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           406
                           99.99
                           99.99
                           0
                           2138.0
     

     
     
77916
                           gb|AAN66403.1|AE016268_2
                           (AE016776) glycosyl transferase, group 1 family protein [Pseudomonas putida KT2440]
                           412
                           66.01
                           76.94
                           22
                           1423.0
     

     
     
77917
                           gb|AAO54701.1|
                           (AE016860) glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           413
                           62.71
                           77.23
                           17
                           1376.0
     

     
     
77918
                           gb|AAM35921.1|
                           (AE011733) glycosyl transferase [Xanthomonas axonopodis pv. citri str. 306]
                           417
                           43.88
                           58.27
                           50
                           879.0
     

     






      

          
GC ORFID: 44348How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0842Glimmer Score: 

          
Start: 220831Stop: 219611

          
Length: 1221


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0842 translation of PA0842Homolog Bit Score 828.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5041 (ORF: BLASTX 545.0), t_PA0842 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAGACCTCTAAGCATCGCCCTGATCAGCGAAACCTACCCACCGGAAGTCAACGGCGTCGCCAATACC 
CTGGGTCGCCTGCATGCCGGTCTCCAGCAGCTTGGCCATCGGGTTCAGGTGGTGCGCCCGCGCCAGCCCGGC 
GACGACGGCCGGCGCAGCGACGCCGAGCTGGTGCTGACCCGCGGCTGGCCGTTGCCCGGCTACCCCGGCCTG 
CAATGGGGCATGTCGAGCCTGCACAAGCTGCTGCGCTGCTGGAAGCGCCAGCGCCCGGACGTGCTCTACATC 
GCCACCGAAGGCCCGCTCGGCTTCTCTGCCCTGCGCGCCGCGCGGCGCCTGGGCATCCCGGCGGTCAGCGGC 
TTCCACACCAACTTCCAGCAGTACAGCGAGCACTACGGCTTCGGTCCGCTGACCCGGCTGGTCACCGGCTAC 
CTGCGCTGGTTCCACAACCGCACGCAGATGACCCTGGTGCCCAGCGGCAGCCAGCGCATGGAATTGCAACGG 
CGCGGTTTCGAACGCCTCAACCTGCTCTCCCGCGGGGTCGACAGCCAACTCTTCCATCCCTCCCGGCGCGAT 
CCCGAACTACGCCGGCGCTGGGGCCTGGGCGAACAGGACATCGCCGTGCTGCACGTCGGCCGGCTGGCGGCG 
GAGAAGAACCTCGGCCTGCTCGGCGGCACCTTCCGCGCGCTCTGCGCTGCCCATCCGCAGCTGAAGCTGCGC 
CTGGTACTGGTGGGCGACGGGCCGGAGCGCAAGCACCTCGAACGGGACCTGCCCGAAGCGCTGTTCTGCGGC 
GTCCAGCGCGGCGAAACCCTGGCCGCCCACTACGCCTCGGGCGACCTGTTCCTCTTCCCAAGCCTGTCGGAG 
ACCTTCGGCAACGTGGTCCTCGAAGCCCAGGCCGCCGGCCTCGCGGTGGTCGCCTTCGACCAGGCCGCCGCC 
GGCCAGCACATCCGCCATGGGCACAACGGCGTGCTCGCCGCGCCGGGCGACAAGAGCGGCTTCGTCGAAGTC 
GCCAGTTGGCTGCTGGACGACCAGGAACGCCTGCGCCGGGTCCGTCTCAACGCCCGCCAGCACGCCAGCCGG 
CAAGGTTGGGACAGCATCGTCGAGCACTTCCAGAACTACCTGGAGGACGCCTGCGCCAGTCCGCTGGTCCAG 
CCCGCTCGGTCGAAGCCCGAGCGGCCGCCGGCGGAGGATGGCGGGGCCTTGCCACGCAGCCGCGAGTAG