ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1345

TrivialName: PA14_28880

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_28880

PAO1 Ortholog Locus: PA2729

Sequence Length: 1350

Protein Length: 449

Start: 2493942

Stop: 2492593

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06117.1|AE004700_13 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 437/449 (97%), Positives = 441/449 (98%)

Sequence:

ATGAGCGGACCGAAAGTCGTACGAATCGTCACCCGGGAAGAAGCCATCGCCACCTGCGAGCGCGACCTGCAA
CGCCTGGACAAGGCCCTCGCGCGCTGGGAAAACCAGGCCAGCCGGCTCGCCCAGCTCAGCGACGCCGAGCGC
GCCGCCGCCCACGCCCGCCGCGCCAGCCTGCACGCCCTGCTCGAAGAGGAACGCTGGCTGGATGTGCAATTG
CAGGTGAAGATCGAAAGCGAATTCCTCAAGCGCGACCTCGCCGAACGCGAAGAGCGCGCCATTCGCCAGGCT
GCGGAAACGCGCCAGCGACACCGCCGCCTCCAGGAAAACGCCAGCGCCCTGCTCCAGGCCCTCGACGCCAGG
CCCGATGCCGCCAGCGCGGCACTCCGGCAAACCCTGCAAGCGCTGGCCGACGGCGCCCTCCGCGACGACGCG
GAAGCCCTGCTCGCCCAAGGCTTCGCCGCCCTCGCCAGCGCCCCCGCCGAGGAACGCCTCAGCGCAGCCCAG
CACGAACTCGCCCAGCGCCTGAAGACCGACGAAACGCCCATCACCCTGGAACAGTGGCGCGCCCGCCAGCAA
CAGGACGCCCCGCGCGAACAGCGCCTGGCGCGCATCGACCGGCACATCGCCGAACTGCAACTGCTGCAAGGC
GAGGCCAGCGCCCAAGCGTTCCTCGAGCGACTGGCCCGCGCCGAAGCCGAACAGCGCCCGGAGCGCCGCAAC
CTGCTGCTCGACAGCCTGGTTCTCGACCTCGCCCAGGCCGCCCGCGAACACCAGCAGCAACGCCAGCGCCTG
GAACACCTGCAAGACCTCGCCAGCGAAGTCGCCGCCCTGGGCGCCGCCGAACACGCCGAACTGCTCCAGCGC
GCCGCCGCCTGCCAGCCCGACAGCGATCCGCAGCAACTCGCCGAACTCACCGAACGATGCAACGCCATCCTC
ACCGCCCACCTCCAGCAACAGGCCGCCCTCGCCCGCCGCCAGGCCGTGCTCCAGGGCCTCGCCAGCCTCGGC
TACGAAGTCCGCGAAGGCATGGCCACCGCCTGGGCGCAGACCGGCAGGGTCGTCCTGCGCAAACCCGCCACC
CCCGGCTACGGCCTGGAAGTCGGCGGCAAGGCCGTCAACGGCCGCCTGCAACTACGCGCCGTCGCCCTCAAC
GCCAACCGCGACAGCCAGCGCGACCGCGACATCGAAACCCTCTGGTGCGGCGAATTCCAACGCCTCCAGGCC
CTGCTCGCCGCCCAGGGCGGCGAACTCAGCGTGGAACGCGCGCTGGGAGTGGGAGAAGTGGCGTTGAAGGAG
ATTGGCGAGGAGGAGCAGCGGGAGATGGGGGTGGCGCGGCAGAGGGGGTTGTGA

Translation:

MSGPKVVRIVTREEAIATCERDLQRLDKALARWENQASRLAQLSDAERAAAHARRASLHALLEEERWLDVQL
QVKIESEFLKRDLAEREERAIRQAAETRQRHRRLQENASALLQALDARPDAASAALRQTLQALADGALRDDA
EALLAQGFAALASAPAEERLSAAQHELAQRLKTDETPITLEQWRARQQQDAPREQRLARIDRHIAELQLLQG
EASAQAFLERLARAEAEQRPERRNLLLDSLVLDLAQAAREHQQQRQRLEHLQDLASEVAALGAAEHAELLQR
AAACQPDSDPQQLAELTERCNAILTAHLQQQAALARRQAVLQGLASLGYEVREGMATAWAQTGRVVLRKPAT
PGYGLEVGGKAVNGRLQLRAVALNANRDSQRDRDIETLWCGEFQRLQALLAAQGGELSVERALGVGEVALKE
IGEEEQREMGVARQRGL*

AnnotationID:1354 GeneID:1345

AnnotatorUID: diggins

Modification Date/Time: 2005-04-05 07:07:18

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2729

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2693

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19838

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36304

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1345_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1345

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2452 PA2729_tr translation of PA2729 449 97.32 98.21 0 2142.0

77914 gb|AAG06117.1|AE004700_13 (AE004700) hypothetical protein PA2729 [Pseudomonas aeruginosa PAO1] 449 97.32 98.21 0 2142.0

GC ORFID: `44347`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2729`	Glimmer Score:
Start: `2459984`	Stop: `2461333`
Length: `1350`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2729 translation of PA2729`	Homolog Bit Score `829.0`
Other Homologs: `t_PA2729 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGGACCGAAAGTCGTACGAATCGTCACCCGGGAAGAAGCCATCGCCACCTGCGAGCGCGACCTGCAA CGCCTGGACAAGGCCCTCGCGCGCTGGGAAAACCAGGCCAGCCGGCTCGCCCAGCTCAGCGACGCCGAGCGC GCCGCCGCCCACGCCCGCCGCGCCAGCCTGCACGCCCTGCTCGAAGAGGAACGCTGGCTGGATGTGCAATTG CAGGTGAAGATCGAAAGCGAATTCCTCAAGCGCGACCTCGCCGAACGCGAAGAGCGCGCCATTCGCCAGGCT GCGGAAACGCGCCAGCGACACCGCCGCCTCCAGGAAAACGCCAGCGCCCTGCTCCAGGCCCTCGACGCCAGG CCCGATGCCGCCAGCGCGGCACTCCGGCAAACCCTGCAAGCGCTGGCCGACGGCGCCCTCCGCGACGACGCG GAAGCCCTGCTCGCCCAAGGCTTCGCCGCCCTCGCCAGCGCCCCCGCCGAGGAACGCCTCAGCGCAGCCCAG CACGAACTCGCCCAGCGCCTGAAGACCGACGAAACGCCCATCACCCTGGAACAGTGGCGCGCCCGCCAGCAA CAGGACGCCCCGCGCGAACAGCGCCTGGCGCGCATCGACCGGCACATCGCCGAACTGCAACTGCTGCAAGGC GAGGCCAGCGCCCAAGCGTTCCTCGAGCGACTGGCCCGCGCCGAAGCCGAACAGCGCCCGGAGCGCCGCAAC CTGCTGCTCGACAGCCTGGTTCTCGACCTCGCCCAGGCCGCCCGCGAACACCAGCAGCAACGCCAGCGCCTG GAACACCTGCAAGACCTCGCCAGCGAAGTCGCCGCCCTGGGCGCCGCCGAACACGCCGAACTGCTCCAGCGC GCCGCCGCCTGCCAGCCCGACAGCGATCCGCAGCAACTCGCCGAACTCACCGAACGATGCAACGCCATCCTC ACCGCCCACCTCCAGCAACAGGCCGCCCTCGCCCGCCGCCAGGCCGTGCTCCAGGGCCTCGCCAGCCTCGGC TACGAAGTCCGCGAAGGCATGGCCACCGCCTGGGCGCAGACCGGCAGGGTCGTCCTGCGCAAACCCGCCACC CCCGGCTACGGCCTGGAAGTCGGCGGCAAGGCCGTCAACGGCCGCCTGCAACTACGCGCCGTCGCCCTCAAC GCCAACCGCGACAGCCAGCGCGACCGCGACATCGAAACCCTCTGGTGCGGCGAATTCCAACGCCTCCAGGCC CTGCTCGCCGCCCAGGGCGGCGAACTCAGCGTGGAACGCGCGCTGGGAGTGGGAGAAGTGGCGTTGAAGGAG ATTGGCGAGGAGGAGCAGCGGGAGATGGGGGTGGCGCGGCAGAGGGGGTTGTGA