ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1344

TrivialName: PA14_48540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_48540

PAO1 Ortholog Locus: PA1220

Sequence Length: 1263

Protein Length: 420

Start: 4316081

Stop: 4317343

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04609.1|AE004551_13 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 413/420 (98%), Positives = 416/420 (99%)

Sequence:

ATGAACGTCGGTCTCTCCGCGGAGGTGCGCTACCACTGGTTCCGCGAGCACCTGGTGGTGGTCGGCGATTGG
CACCGCCTGTCCCCCTCCGAGCGCGACCGCCTGCGGCACCAACCGATGCCGGATGAGGCCGCGCAATCCTTG
CGCGTCGACCTGTCGCCCTGGTCCTGCGGGATGGTCTTCAGCGAGCTGCTCGGCGCCGACCTGACCCGCTTC
GGCCTCTGCTACCTGGCTCCGGCCGAGGTGCCGGCATCCGACCTGACGCGCCTGGGTCGGCGCCTGCGCGAA
GAGTTCCCGTTGCTCGACAGCCAGGTGGACAGCGGCGCGGAAGGTTTCGAACTGGTCGTCCACGGGCGGCCC
GAGGAGAGCCCGGCGCTGGAAGTCGGCCCCTTCGCCGACGAAGACGCGCTCATCGCAGCGCTGCTGCAACGC
CCGCATTCCCTGTTCGAGCGCGGCCTGCTGCGACTGTTCCACGGGCGCTGCGGAGGACGTGCGCGCTGGGGC
GTCTGGCTGCATCACCTGGTCGCCGACGCCGACTTCGCCAGCGTGCTGCTGGCCCGCCTGGCCGCGCTCAAC
GCCGACCCCACGACCGAAGCGGCGGCCCCCGAGTTCGGCTTCCTCCAGCAGCAATGGCGCCTGGAGCGCCAG
CTGCGCGAGCGCAGGACCAGGCTGGAAGACTACTGGAGCGAGCGCGGCGAGGCGTTCCGTGAACTGGCGAGC
CTGCCCTGGGCGGAGCGCGCCAGCCATTGCGAGGATTTCCGCTTGGCCGCCACGCCAGGAGACGGCGAAGCC
GCCCTGCTGACCCGGCTCGCCTGCGCCCTGGCTCTCGCCCTGGCCAGCCAGGGCGCCACCGGCAAGGTCCTG
GCGCTGACCCCGGTCAGCCTGCGCAGTCGCCGAGGCACGGCGGTTTCCGGTTGCTGGCTGAACCTGGTGCCG
CTGCTGCTGGACGCCGCGATCGCCGAGGACACCTTCGAACGACACAGGCTCGAGGCCTTCGAGCACAGCCTG
CTGCCGGCGGAGGCCATCGCCGAACGGGCCGGGCTGCGCTATGCCGACGCCCAGGTGATGATCAATGTCATC
GACCAGCCATTCCGCAGCGCCGGGTTCATCCACCGGCCGACACTGAAGAGCCGCCTGCCGCTGACCCTGACC
CTGGTCCGGCGCGACGACGGCGGCTGGGACGCCAGCCTGGCCAGCCGCTTCGGCCGCGAACGGACCCTGTCG
CTGGCGGCGGCCATGGCCGAGGCGCTGCGCCCATGCTGA

Translation:

MNVGLSAEVRYHWFREHLVVVGDWHRLSPSERDRLRHQPMPDEAAQSLRVDLSPWSCGMVFSELLGADLTRF
GLCYLAPAEVPASDLTRLGRRLREEFPLLDSQVDSGAEGFELVVHGRPEESPALEVGPFADEDALIAALLQR
PHSLFERGLLRLFHGRCGGRARWGVWLHHLVADADFASVLLARLAALNADPTTEAAAPEFGFLQQQWRLERQ
LRERRTRLEDYWSERGEAFRELASLPWAERASHCEDFRLAATPGDGEAALLTRLACALALALASQGATGKVL
ALTPVSLRSRRGTAVSGCWLNLVPLLLDAAIAEDTFERHRLEAFEHSLLPAEAIAERAGLRYADAQVMINVI
DQPFRSAGFIHRPTLKSRLPLTLTLVRRDDGGWDASLASRFGRERTLSLAAAMAEALRPC*

AnnotationID:1353 GeneID:1344

AnnotatorUID: diggins

Modification Date/Time: 2005-02-22 06:06:41

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1220

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2691

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19836

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37552

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1344_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1344

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2451 PA1220_tr translation of PA1220 420 98.33 99.04 0 2142.0

77913 gb|AAG04609.1|AE004551_13 (AE004551) hypothetical protein PA1220 [Pseudomonas aeruginosa PAO1] 420 98.33 99.04 0 2142.0

GC ORFID: `44346`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1220`	Glimmer Score:
Start: `637827`	Stop: `636565`
Length: `1263`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1220 translation of PA1220`	Homolog Bit Score `829.0`
Other Homologs: `t_PA1220 (ORF: GLIMMER)`
GC ORF Sequence
ATGAACGTCGGTCTCTCCGCGGAGGTGCGCTACCACTGGTTCCGCGAGCACCTGGTGGTGGTCGGCGATTGG CACCGCCTGTCCCCCTCCGAGCGCGACCGCCTGCGGCACCAACCGATGCCGGATGAGGCCGCGCAATCCTTG CGCGTCGACCTGTCGCCCTGGTCCTGCGGGATGGTCTTCAGCGAGCTGCTCGGCGCCGACCTGACCCGCTTC GGCCTCTGCTACCTGGCTCCGGCCGAGGTGCCGGCATCCGACCTGACGCGCCTGGGTCGGCGCCTGCGCGAA GAGTTCCCGTTGCTCGACAGCCAGGTGGACAGCGGCGCGGAAGGTTTCGAACTGGTCGTCCACGGGCGGCCC GAGGAGAGCCCGGCGCTGGAAGTCGGCCCCTTCGCCGACGAAGACGCGCTCATCGCAGCGCTGCTGCAACGC CCGCATTCCCTGTTCGAGCGCGGCCTGCTGCGACTGTTCCACGGGCGCTGCGGAGGACGTGCGCGCTGGGGC GTCTGGCTGCATCACCTGGTCGCCGACGCCGACTTCGCCAGCGTGCTGCTGGCCCGCCTGGCCGCGCTCAAC GCCGACCCCACGACCGAAGCGGCGGCCCCCGAGTTCGGCTTCCTCCAGCAGCAATGGCGCCTGGAGCGCCAG CTGCGCGAGCGCAGGACCAGGCTGGAAGACTACTGGAGCGAGCGCGGCGAGGCGTTCCGTGAACTGGCGAGC CTGCCCTGGGCGGAGCGCGCCAGCCATTGCGAGGATTTCCGCTTGGCCGCCACGCCAGGAGACGGCGAAGCC GCCCTGCTGACCCGGCTCGCCTGCGCCCTGGCTCTCGCCCTGGCCAGCCAGGGCGCCACCGGCAAGGTCCTG GCGCTGACCCCGGTCAGCCTGCGCAGTCGCCGAGGCACGGCGGTTTCCGGTTGCTGGCTGAACCTGGTGCCG CTGCTGCTGGACGCCGCGATCGCCGAGGACACCTTCGAACGACACAGGCTCGAGGCCTTCGAGCACAGCCTG CTGCCGGCGGAGGCCATCGCCGAACGGGCCGGGCTGCGCTATGCCGACGCCCAGGTGATGATCAATGTCATC GACCAGCCATTCCGCAGCGCCGGGTTCATCCACCGGCCGACACTGAAGAGCCGCCTGCCGCTGACCCTGACC CTGGTCCGGCGCGACGACGGCGGCTGGGACGCCAGCCTGGCCAGCCGCTTCGGCCGCGAACGGACCCTGTCG CTGGCGGCGGCCATGGCCGAGGCGCTGCGCCCATGCTGA