ViewGene
Locus Name:
GeneID:
Location:

GeneID:1343
TrivialName: PA14_53750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53750
PAO1 Ortholog Locus:PA0813
Sequence Length:1248
Protein Length:415
Start: 4764997
Stop: 4766244
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04202.1|AE004516_7 (AE004516) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 413/415 (99%), Positives = 414/415 (99%)
Sequence:
ATGAGCGCGCTCTTCCCCGCCGGCCCCGACGCCTTCGGTGCCGACGAACTGCTGCGCCTGCGCCGCGAGACC
CCGGCCTGGGGCAGCTACGCGCACTTCGCCCATGGCTCCGCCAGCCTGCCGCCGCAGGTGCTCTACGACGCC
CTCGACAGCTGGCTGGAAGCCGAGCGGCGCTGGGGCGTGCAGCGCGCCGCCGAGCATTTCGCCGAGCCCTTG
CTGGCGGTCCGCGACAGCGTCGCGCGAGTGCTCGGCACCCAGCCACGGCACATCGCCCTGCTCGACTGCGCC
AGCCGCGCCTGGTCGGTGGCCTTTGCCGCGGCCCTGGCCGCCCATCCACGGATACGGGCGATCAGCAGCTTC
GACGAATATGGTTCCAACAGCCTGTGCCTGCTCGCCGCGCGCCAGCAGCGCGGGCTGGAGCTGCGCCTGATC
GACGCACGCGGCGACGCCGCACAGCTGTTGCAACGGCTTGACGAGCAGTTGCACGACCTCGCCCCCGGCCAG
ACGCCGCTGCTGTCGCTCAGCGCGGTGCCCACCGGGCATGGCGCGGCTACCGCGCTGGAGGGCGTAGCCGAG
CGCATCCGCGCCCATGACGGGCTGTTCTTCCTCGATGCCAGCCATGCGGTCGGCCAGTTGCCGCTGGCGGTG
GAGGCGACCGGCTGCGACGTGCTGGTGTTCCCGCCACGCAAGTGGCTGCGCGGGCCAAAGGGACTCGGCGTG
CTCTATCTCGGCGAACGTGCCCTGGAGCGCCTAGCCCTGCCCGACGGGCTGGACGTCGGCGGCGCGCAATGG
AGCGACGCCTTCGCCCTGCAGGCGCGGGATGACGCGCGGCGCTTCGAATGCTCGGAGTTCAACCCGGGGCTG
CGCCTGGCGCTCAAGGCCAGTTGCGACTACCTGTTGCAGACCGATGTCCGGCGCATCGCCCGACGCAACCGC
CAGTTGCGCGAACGCATCGCCCAGCAGCTCTACCGCCGGCTCGGCTGGACGCCGCTGGAACAAGGGCCGCAC
GCCAGCGCGTTGATGACCTACGCGGCCCCCGAACTGAGCGGCGAGCAATGGCTGAAGCGCCTCCACGCGCGC
GGCGTGAACGCCTCCTACATCGGCCCGCAGTATGCCCGCTGGGCGCTGCGCGAGCAGGCGCTGCCGGGGGTA
CTGCGCCTGACTCCGCACTACCTGACCGACGACGGCGAGATCGAGCGCCTCGGCGAGGCCCTGGAGGATTGC
CTGCGACAGCGCGCCGCCAGTTGA
Translation:
MSALFPAGPDAFGADELLRLRRETPAWGSYAHFAHGSASLPPQVLYDALDSWLEAERRWGVQRAAEHFAEPL
LAVRDSVARVLGTQPRHIALLDCASRAWSVAFAAALAAHPRIRAISSFDEYGSNSLCLLAARQQRGLELRLI
DARGDAAQLLQRLDEQLHDLAPGQTPLLSLSAVPTGHGAATALEGVAERIRAHDGLFFLDASHAVGQLPLAV
EATGCDVLVFPPRKWLRGPKGLGVLYLGERALERLALPDGLDVGGAQWSDAFALQARDDARRFECSEFNPGL
RLALKASCDYLLQTDVRRIARRNRQLRERIAQQLYRRLGWTPLEQGPHASALMTYAAPELSGEQWLKRLHAR
GVNASYIGPQYARWALREQALPGVLRLTPHYLTDDGEIERLGEALEDCLRQRAAS*
AnnotationID:1352GeneID:1343
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 16:04:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0813
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0520
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0520, CsdB, Selenocysteine lyase [Amino acid transport and metabolism]
     CD-Length = 405 residues,  96.3% aligned
     Score =  219 bits (558), Expect = 1e-57






   
Genomic Context:






   
Comment:


















    ReferenceID:2689




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19834




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1343
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2450
                           PA0813_tr
                           translation of PA0813
                           415
                           99.51
                           99.75
                           0
                           2141.0
     

     
     
77912
                           gb|AAG04202.1|AE004516_7
                           (AE004516) hypothetical protein PA0813 [Pseudomonas aeruginosa PAO1]
                           415
                           99.51
                           99.75
                           0
                           2141.0
     

     






      

          
GC ORFID: 44345How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0813Glimmer Score: 

          
Start: 188910Stop: 187663

          
Length: 1248


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0813 translation of PA0813Homolog Bit Score 829.0

          
Other Homologs:  t_PA0813 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGCTCTTCCCCGCCGGCCCCGACGCCTTCGGTGCCGACGAACTGCTGCGCCTGCGCCGCGAGACC 
CCGGCCTGGGGCAGCTACGCGCACTTCGCCCATGGCTCCGCCAGCCTGCCGCCGCAGGTGCTCTACGACGCC 
CTCGACAGCTGGCTGGAAGCCGAGCGGCGCTGGGGCGTGCAGCGCGCCGCCGAGCATTTCGCCGAGCCCTTG 
CTGGCGGTCCGCGACAGCGTCGCGCGAGTGCTCGGCACCCAGCCACGGCACATCGCCCTGCTCGACTGCGCC 
AGCCGCGCCTGGTCGGTGGCCTTTGCCGCGGCCCTGGCCGCCCATCCACGGATACGGGCGATCAGCAGCTTC 
GACGAATATGGTTCCAACAGCCTGTGCCTGCTCGCCGCGCGCCAGCAGCGCGGGCTGGAGCTGCGCCTGATC 
GACGCACGCGGCGACGCCGCACAGCTGTTGCAACGGCTTGACGAGCAGTTGCACGACCTCGCCCCCGGCCAG 
ACGCCGCTGCTGTCGCTCAGCGCGGTGCCCACCGGGCATGGCGCGGCTACCGCGCTGGAGGGCGTAGCCGAG 
CGCATCCGCGCCCATGACGGGCTGTTCTTCCTCGATGCCAGCCATGCGGTCGGCCAGTTGCCGCTGGCGGTG 
GAGGCGACCGGCTGCGACGTGCTGGTGTTCCCGCCACGCAAGTGGCTGCGCGGGCCAAAGGGACTCGGCGTG 
CTCTATCTCGGCGAACGTGCCCTGGAGCGCCTAGCCCTGCCCGACGGGCTGGACGTCGGCGGCGCGCAATGG 
AGCGACGCCTTCGCCCTGCAGGCGCGGGATGACGCGCGGCGCTTCGAATGCTCGGAGTTCAACCCGGGGCTG 
CGCCTGGCGCTCAAGGCCAGTTGCGACTACCTGTTGCAGACCGATGTCCGGCGCATCGCCCGACGCAACCGC 
CAGTTGCGCGAACGCATCGCCCAGCAGCTCTACCGCCGGCTCGGCTGGACGCCGCTGGAACAAGGGCCGCAC 
GCCAGCGCGTTGATGACCTACGCGGCCCCCGAACTGAGCGGCGAGCAATGGCTGAAGCGCCTCCACGCGCGC 
GGCGTGAACGCCTCCTACATCGGCCCGCAGTATGCCCGCTGGGCGCTGCGCGAGCAGGCGCTGCCGGGGGTA 
CTGCGCCTGACTCCGCACTACCTGACCGACGACGGCGAGATCGAGCGCCTCGGCGAGGCCCTGGAGGATTGC 
CTGCGACAGCGCGCCGCCAGTTGA