ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1342

TrivialName: PA14_00310

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_00310

PAO1 Ortholog Locus: PA0027

Sequence Length: 1287

Protein Length: 428

Start: 28634

Stop: 29920

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03417.1|AE004442_4 (AE004442) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 422/428 (98%), Positives = 425/428 (99%)

Sequence:

ATGCACAGACTGCTCTCTGACCGCGCTCGGGGCTGGCGTCGCGCACTGTGCGGGGTCGCCTTCGGGCTGCTG
GCGTGGAGCGCCCATGGCGTCCCCGCCAAGGCGCCGCAGGATCTGCGGATCGACGGCGAGGTGCTGCCGGGG
AAAAGCGTCGACCTGCTCGAGCAGGCCTTGTCGCGGGTCAAGTTCAACACCGACCCGCAGCAGTTGCGCCGT
GGCCTGGTGGAAAACCGCCTGCTGGCACGCGCGGTGGAAGACCAGCTCACCGCGCAGAGCCGCGCCGATCTC
GACGCCAGCGTGGAGATCGAGGCCGGCAACCTGCTCGAACAGGTATACGGCAGGCGCTACCGCGAGGACCTC
GGGCCATACCTGCGCCAGCCCCGGGCCCTGAGCGCGGAGCGTTTGCGCGAGGTGCTGGCGCCGAGGAGCCGC
GGCCTGGTGGAAAACAGCCTGCTGCTGGACGAGACGCAGCGCCGCGAGGCGGCCGGGGTCGAGCTGATCGGC
TGGCAGTTTCCCGGCCAGCCGGCACAGGTCCTCGACCTGCTATCGCTGTACGAAGGCGACAACGTCCAGGGC
CAGGTCGAATTGCAACAGGGCAACCTCGCCTACCTGGCGCGCCAGGTCCAGACCCGCATCCGCCGCGACTAC
CTCTGGTACCGCCTGGCCCGGGACGGCTTCGGCCCGGCAGAGCGGCAGGGCGTGAGGACCCTGGTGCGGGAC
AAGCTGGTGCGCCATCGCTATCTGCACCAGATCGGCCTCTACAGTGATTTCCACCATGAGTCCGATGCGCTG
CGGGAACTCGCCGGCAAGGTCAGCGACAAGGACGCCGAGGCCTACTATCGGCGCAACCTGGAGCGTTACCGC
AACGTCGCGCAGGTGCAGGCGGCGCATATCCGCCTGGCCGACCAGGCGAGCGCGGACAAGGTCTACGCCGAG
TTGCGCAACGGCCTGGCCTTCGACGAGGCGGTACGCCGCTATTCCCTGGCCGACGACAGGGACCGCGACCCG
CCCGGCGACCTAGGCCTGATACGGCCCCAGGACGGCCGGCTCGACCTGCTGCGCAAGACTGCGCTGATCCAG
AAGGCCGATACGGTTTCCCAGCCGATGCGCATCGACGGCGCGTTCGAGATCGTCCGGGTGCGTAGCCGCGAG
GATCGCCAGTTGCCCCTCGACGACCGCAGCGTGCGCTTCGAGGTGAACCAGGCGGTGGCGCGCGAGCAACTG
GCAGCACAGTTCGAGACGCGCCTGCGCAACCTGCTGGCCGGCGCCAGGGTGGAAGGCCTGTGA

Translation:

MHRLLSDRARGWRRALCGVAFGLLAWSAHGVPAKAPQDLRIDGEVLPGKSVDLLEQALSRVKFNTDPQQLRR
GLVENRLLARAVEDQLTAQSRADLDASVEIEAGNLLEQVYGRRYREDLGPYLRQPRALSAERLREVLAPRSR
GLVENSLLLDETQRREAAGVELIGWQFPGQPAQVLDLLSLYEGDNVQGQVELQQGNLAYLARQVQTRIRRDY
LWYRLARDGFGPAERQGVRTLVRDKLVRHRYLHQIGLYSDFHHESDALRELAGKVSDKDAEAYYRRNLERYR
NVAQVQAAHIRLADQASADKVYAELRNGLAFDEAVRRYSLADDRDRDPPGDLGLIRPQDGRLDLLRKTALIQ
KADTVSQPMRIDGAFEIVRVRSREDRQLPLDDRSVRFEVNQAVAREQLAAQFETRLRNLLAGARVEGL*

AnnotationID:1351 GeneID:1342

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 13:01:46

Gene Name:

Confidence Code: 3

GeneProduct: putative peptidyl-prolyl isomerase

Cell Localization: ()

Synonyms: PA0027

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (26) Translation, post-translational modification, degradation

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0760

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 320 residues,  97.8% aligned
Score = 62.4 bits (150), Expect = 1e-10

Genomic Context:

Comment:

ReferenceID:2687

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19832

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33387

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1342_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1342

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2449 PA0027_tr translation of PA0027 428 98.59 99.29 0 2142.0

77911 gb|AAG03417.1|AE004442_4 (AE004442) hypothetical protein PA0027 [Pseudomonas aeruginosa PAO1] 428 98.59 99.29 0 2142.0

GC ORFID: `44344`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0027`	Glimmer Score:
Start: `5829971`	Stop: `5831257`
Length: `1287`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0027 translation of PA0027`	Homolog Bit Score `829.0`
Other Homologs: `t_PA0027 (ORF: GLIMMER)`
GC ORF Sequence
ATGCACAGACTGCTCTCTGACCGCGCTCGGGGCTGGCGTCGCGCACTGTGCGGGGTCGCCTTCGGGCTGCTG GCGTGGAGCGCCCATGGCGTCCCCGCCAAGGCGCCGCAGGATCTGCGGATCGACGGCGAGGTGCTGCCGGGG AAAAGCGTCGACCTGCTCGAGCAGGCCTTGTCGCGGGTCAAGTTCAACACCGACCCGCAGCAGTTGCGCCGT GGCCTGGTGGAAAACCGCCTGCTGGCACGCGCGGTGGAAGACCAGCTCACCGCGCAGAGCCGCGCCGATCTC GACGCCAGCGTGGAGATCGAGGCCGGCAACCTGCTCGAACAGGTATACGGCAGGCGCTACCGCGAGGACCTC GGGCCATACCTGCGCCAGCCCCGGGCCCTGAGCGCGGAGCGTTTGCGCGAGGTGCTGGCGCCGAGGAGCCGC GGCCTGGTGGAAAACAGCCTGCTGCTGGACGAGACGCAGCGCCGCGAGGCGGCCGGGGTCGAGCTGATCGGC TGGCAGTTTCCCGGCCAGCCGGCACAGGTCCTCGACCTGCTATCGCTGTACGAAGGCGACAACGTCCAGGGC CAGGTCGAATTGCAACAGGGCAACCTCGCCTACCTGGCGCGCCAGGTCCAGACCCGCATCCGCCGCGACTAC CTCTGGTACCGCCTGGCCCGGGACGGCTTCGGCCCGGCAGAGCGGCAGGGCGTGAGGACCCTGGTGCGGGAC AAGCTGGTGCGCCATCGCTATCTGCACCAGATCGGCCTCTACAGTGATTTCCACCATGAGTCCGATGCGCTG CGGGAACTCGCCGGCAAGGTCAGCGACAAGGACGCCGAGGCCTACTATCGGCGCAACCTGGAGCGTTACCGC AACGTCGCGCAGGTGCAGGCGGCGCATATCCGCCTGGCCGACCAGGCGAGCGCGGACAAGGTCTACGCCGAG TTGCGCAACGGCCTGGCCTTCGACGAGGCGGTACGCCGCTATTCCCTGGCCGACGACAGGGACCGCGACCCG CCCGGCGACCTAGGCCTGATACGGCCCCAGGACGGCCGGCTCGACCTGCTGCGCAAGACTGCGCTGATCCAG AAGGCCGATACGGTTTCCCAGCCGATGCGCATCGACGGCGCGTTCGAGATCGTCCGGGTGCGTAGCCGCGAG GATCGCCAGTTGCCCCTCGACGACCGCAGCGTGCGCTTCGAGGTGAACCAGGCGGTGGCGCGCGAGCAACTG GCAGCACAGTTCGAGACGCGCCTGCGCAACCTGCTGGCCGGCGCCAGGGTGGAAGGCCTGTGA