ViewGene

Locus Name:
GeneID:
Location:

GeneID:1341
TrivialName: PA14_71710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71710
PAO1 Ortholog Locus:PA5434
Sequence Length:1254
Protein Length:417
Start: 6389235
Stop: 6387982
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08819.1|AE004956_3 (AE004956) tryptophan permease [Pseudomonas aeruginosa PAO1]
Identities = 416/417 (99%), Positives = 416/417 (99%)
Sequence:
GTGTCGTCCTCTCCAGCTCAAACGCCCAGCCGCCGGCCCTCGCTGCTCGGCGGTTCGATGATCATCGCCGGC
ACCGCCGTCGGCGCCGGAATGTTCTCCCTGCCCATCGCCATGTCCGGCATCTGGTTCGGCTGGTCGGTGGCG
GTGTTCCTGCTCACCTGGTTCTGCATGCTGCTGTCGGGGATGATGATCCTCGAGGCCAACCTCAACTACCCG
GTGGGCTCGAGCTTCTCGACCATCACCCGCGACCTGCTCGGCCAGGGCTGGAATGTGGTCAACGGGCTGAGC
ATCGCCTTCGTCCTCTATATCCTCACCTATGCCTATATCTCCGGCGGCGGCTCGATCATCGGCTACACCCTG
TCCAGCGGCCTCGGCGTGACCCTGCCGGAAAAGCTCGCCGGGCTGCTGTTCGCCCTGGCGGTGGCGCTGGTG
GTGTGGTGGAGCACCCGCGCGGTGGACCGCATCACCACGCTGATGCTCGGCGGCATGATCATTACCTTCGGC
CTCTCCATCAGCGGCCTGCTCGGGCGCATCCAGCCGGCGATCCTGTTCAACAGCGGCGAGCCGGACGCGGTC
TACTGGCCCTACCTGCTGGCGACCCTGCCGTTCTGCCTGACTTCCTTCGGTTACCACGGCAACGTGCCGAGC
CTGATGAAGTACTACGGCAAGGACCCGCAGCGGATCAGCCGTTCGCTGTGGATCGGCACCCTGATCGCCCTG
GCCATCTACCTGCTGTGGCAGGCCAGCACCCTGGGCACCATCCCGCGCGAGCAGTTCAAGGGCATCATCGCC
GGCGGCAGCAACGTCGGCACCCTGGTGGAATACCTGCACCGGATCACCGCGTCGGATTCGCTGAACGCGTTG
CTCACCACCTTCTCCAACCTGGCGGTGGCCAGCTCCTTCCTCGGCGTGACCCTCGGCCTGTTCGACTACCTG
GCCGACCTGTGCAGGTTCGACGACAGCCACTTCGGACGTTTCAAGACCGCGTTGCTGACCTTCGTCCCACCG
ACCATCGGCGGGCTGCTGTTCCCCAACGGCTTCATCTACGCCATCGGTTTCGCCGGGCTGGCCGCGGCGTTC
TGGGCGGTGATCGTTCCGGCGCTGATGGCGCGGGCCTCGCGCAAGCGCTTCGGCAGCCCGCTGTTCCGCGCC
TGGGGCGGCACGCCGGCGATCGTGCTGGTGCTGCTGTTCGGCGTGGCCAACGCGGTCGCGCACATCCTGGCC
AGCCTGCACTGGCTGCCGGAGTACCGTTGA
Translation:
MSSSPAQTPSRRPSLLGGSMIIAGTAVGAGMFSLPIAMSGIWFGWSVAVFLLTWFCMLLSGMMILEANLNYP
VGSSFSTITRDLLGQGWNVVNGLSIAFVLYILTYAYISGGGSIIGYTLSSGLGVTLPEKLAGLLFALAVALV
VWWSTRAVDRITTLMLGGMIITFGLSISGLLGRIQPAILFNSGEPDAVYWPYLLATLPFCLTSFGYHGNVPS
LMKYYGKDPQRISRSLWIGTLIALAIYLLWQASTLGTIPREQFKGIIAGGSNVGTLVEYLHRITASDSLNAL
LTTFSNLAVASSFLGVTLGLFDYLADLCRFDDSHFGRFKTALLTFVPPTIGGLLFPNGFIYAIGFAGLAAAF
WAVIVPALMARASRKRFGSPLFRAWGGTPAIVLVLLFGVANAVAHILASLHWLPEYR*
AnnotationID:1350GeneID:1341
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 15:03:37
Gene Name:mtr
Confidence Code:2
GeneProduct:tryptophan permease
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03222,COG0814
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL22151.1| (AE008851) HAAAP family tryptophan-specific transport protein
           [Salmonella typhimurium LT2]
          Length = 414

 Score =  543 bits (1398), Expect = e-153
 Identities = 269/410 (65%), Positives = 315/410 (76%), Gaps = 1/410 (0%)

>gb|AAN82355.1|AE016767_115 (AE016767) Tryptophan-specific transport protein [Escherichia coli
           CFT073]
          Length = 414

 Score =  542 bits (1397), Expect = e-153
 Identities = 268/410 (65%), Positives = 315/410 (76%), Gaps = 1/410 (0%)

>gb|AAP18483.1| (AE016989) tryptophan-specific transport protein [Shigella flexneri
           2a str. 2457T]
          Length = 414

 Score =  542 bits (1396), Expect = e-153
 Identities = 268/410 (65%), Positives = 315/410 (76%), Gaps = 1/410 (0%)
Structural Features:
pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
CD-Length = 393 residues, 100.0% aligned
Score =  410 bits (1056), Expect = 1e-115
Identities = 206/395 (52%), Positives = 276/395 (69%), Gaps = 2/395 (0%)

COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]
CD-Length = 415 residues, 100.0% aligned
Score =  262 bits (671), Expect = 6e-71
Identities = 158/415 (38%), Positives = 234/415 (56%), Gaps = 6/415 (1%)
Genomic Context:
Comment:
ReferenceID:14333
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19830
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34678
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1341_cdd.html
URL:
ReferenceID:35630
Author/Investigator(s): Heatwole VM, Somerville RL.
Title: Cloning, nucleotide sequence, and characterization of mtr, the structural gene for a tryptophan-specific permease of Escherichia coli K-12.
PubMed: 1987112
MedLine:
Source:
J Bacteriol. 1991 Jan;173(1):108-15.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1987112
Homologs By Global Alignment
Gene ID:1341

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2448 PA5434_tr translation of PA5434 417 99.76 99.76 0 2141.0
77874 gb|AAG08819.1|AE004956_3 (AE004956) tryptophan permease [Pseudomonas aeruginosa PAO1] 417 99.52 99.76 0 2138.0
77875 gb|AAL22151.1| (AE008851) HAAAP family tryptophan-specific transport protein [Salmonella typhimurium LT2] 417 64.50 75.77 3 1397.0
77882 gb|AAA24182.1| (M59862) tryptophan-specific permease [Escherichia coli] 417 64.26 75.77 3 1395.0
77881 gb|AAA24183.1| (M58338) tryptophan-specific permease [Escherichia coli] 417 64.26 75.77 3 1395.0
GC ORFID: 44343How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5434Glimmer Score:
Start: 5652924Stop: 5651671
Length: 1254
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5434 translation of PA5434Homolog Bit Score 829.0
Other Homologs: t_PA5434 (ORF: GLIMMER)
GC ORF Sequence
GTGTCGTCCTCTCCAGCTCAAACGCCCAGCCGCCGGCCCTCGCTGCTCGGCGGTTCGATGATCATCGCCGGC
ACCGCCGTCGGCGCCGGAATGTTCTCCCTGCCCATCGCCATGTCCGGCATCTGGTTCGGCTGGTCGGTGGCG
GTGTTCCTGCTCACCTGGTTCTGCATGCTGCTGTCGGGGATGATGATCCTCGAGGCCAACCTCAACTACCCG
GTGGGCTCGAGCTTCTCGACCATCACCCGCGACCTGCTCGGCCAGGGCTGGAATGTGGTCAACGGGCTGAGC
ATCGCCTTCGTCCTCTATATCCTCACCTATGCCTATATCTCCGGCGGCGGCTCGATCATCGGCTACACCCTG
TCCAGCGGCCTCGGCGTGACCCTGCCGGAAAAGCTCGCCGGGCTGCTGTTCGCCCTGGCGGTGGCGCTGGTG
GTGTGGTGGAGCACCCGCGCGGTGGACCGCATCACCACGCTGATGCTCGGCGGCATGATCATTACCTTCGGC
CTCTCCATCAGCGGCCTGCTCGGGCGCATCCAGCCGGCGATCCTGTTCAACAGCGGCGAGCCGGACGCGGTC
TACTGGCCCTACCTGCTGGCGACCCTGCCGTTCTGCCTGACTTCCTTCGGTTACCACGGCAACGTGCCGAGC
CTGATGAAGTACTACGGCAAGGACCCGCAGCGGATCAGCCGTTCGCTGTGGATCGGCACCCTGATCGCCCTG
GCCATCTACCTGCTGTGGCAGGCCAGCACCCTGGGCACCATCCCGCGCGAGCAGTTCAAGGGCATCATCGCC
GGCGGCAGCAACGTCGGCACCCTGGTGGAATACCTGCACCGGATCACCGCGTCGGATTCGCTGAACGCGTTG
CTCACCACCTTCTCCAACCTGGCGGTGGCCAGCTCCTTCCTCGGCGTGACCCTCGGCCTGTTCGACTACCTG
GCCGACCTGTGCAGGTTCGACGACAGCCACTTCGGACGTTTCAAGACCGCGTTGCTGACCTTCGTCCCACCG
ACCATCGGCGGGCTGCTGTTCCCCAACGGCTTCATCTACGCCATCGGTTTCGCCGGGCTGGCCGCGGCGTTC
TGGGCGGTGATCGTTCCGGCGCTGATGGCGCGGGCCTCGCGCAAGCGCTTCGGCAGCCCGCTGTTCCGCGCC
TGGGGCGGCACGCCGGCGATCGTGCTGGTGCTGCTGTTCGGCGTGGCCAACGCGGTCGCGCACATCCTGGCC
AGCCTGCACTGGCTGCCGGAGTACCGTTGA