ViewGene
Locus Name:
GeneID:
Location:

GeneID:1340
TrivialName: PA14_57560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57560
PAO1 Ortholog Locus:PA4430
Sequence Length:1212
Protein Length:403
Start: 5127824
Stop: 5126613
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07818.1|AE004857_9 (AE004857) probable cytochrome b [Pseudomonas aeruginosa PAO1]
Identities = 403/403 (100%), Positives = 403/403 (100%)
Sequence:
ATGAACAAGTTCATGGCTTGGGTCGATGCGCGTTTTCCCGCGACCAAGATGTGGGAAGACCATCTGAGCAAG
TACTACGCACCGAAGAACTTCAACTTCTGGTATTTCTTCGGTTCCCTGGCGCTGCTGGTGCTGGTCAACCAG
ATCCTCACCGGCATCTGGCTGACCATGAGCTTCACGCCGTCGGCCGAAGAGGCGTTCGCTTCCGTCGAATAC
ATCATGCGCGATGTCGACTACGGCTGGATCATTCGCTACATGCACTCCACCGGTGCATCGGCGTTCTTCATC
GTGGTCTACCTGCACATGTTCCGCGGCCTGCTCTACGGCTCCTATCAGAAGCCGCGCGAGCTGGTGTGGATC
TTCGGCATGCTGATCTACCTGGCGCTGATGGCCGAGGCCTTCATGGGCTACCTGCTGCCTTGGGGTCAGATG
TCCTACTGGGGCGCCCAGGTGATCATTTCCCTGTTCGGCGCGATTCCGGTGGTCGGCGAAGACCTGGCCCAG
TGGATCCGCGGTGACTTCCTGATCTCCGGCATCACCCTGAACCGCTTCTTCGCCCTGCATGTGATCGCCCTG
CCGATCGTCCTGCTCGGCCTGGTCGTGCTGCACATCCTGGCGCTGCACGAAGTCGGTTCGAACAACCCGGAC
GGCGTTGACATCAAGAAGAAGAAGGACGAGAACGGCGTACCGCTGGACGGCATCGCGTTCCATCCGTACTAC
ACCGTGAAGGATATCGTCGGTGTGGTGGTGTTCCTGTTCATCTTCTGCACCGTGATCTTCTTCTTCCCGGAA
ATGGGCGGCTACTTCCTCGAGAAGCCCAACTTCGAGATGGCCAACCAGTTCAAGACCCCCGAGCACATCGCT
CCGGTCTGGTACTTCACCCCGTTCTACGCGATCCTCCGCGCGGTTCCGGACAAGCTGATGGGCGTGGTGGCG
ATGGGTGCGGCGATCGCCGTGCTGTTCGTCCTGCCGTGGCTGGATCGCAGCCCGGTTCGCTCGATCCGCTAC
AAGGGCTGGCTGAGCAAGCTGTGGCTGGTGATCTTCGCGGTGTCCTTCGTGATCCTCGGCTACTACGGCGCC
CAGGCTCCGAGCCCGCTGGGTACTACCCTGTCGCGCGTTTGCACCGTCCTGTATTTCGCCTTCTTCATCCTG
ATGCCGTTCTACACCCGGATGGAGAAGACCAAACCGGTTCCGGAAAGGGTGACTGGCTGA
Translation:
MNKFMAWVDARFPATKMWEDHLSKYYAPKNFNFWYFFGSLALLVLVNQILTGIWLTMSFTPSAEEAFASVEY
IMRDVDYGWIIRYMHSTGASAFFIVVYLHMFRGLLYGSYQKPRELVWIFGMLIYLALMAEAFMGYLLPWGQM
SYWGAQVIISLFGAIPVVGEDLAQWIRGDFLISGITLNRFFALHVIALPIVLLGLVVLHILALHEVGSNNPD
GVDIKKKKDENGVPLDGIAFHPYYTVKDIVGVVVFLFIFCTVIFFFPEMGGYFLEKPNFEMANQFKTPEHIA
PVWYFTPFYAILRAVPDKLMGVVAMGAAIAVLFVLPWLDRSPVRSIRYKGWLSKLWLVIFAVSFVILGYYGA
QAPSPLGTTLSRVCTVLYFAFFILMPFYTRMEKTKPVPERVTG*
AnnotationID:1349GeneID:1340
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome b
Cell Localization:()
Synonyms:PA4430
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1290,cd00284,KOG4663,pfam00033
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66942.1|AE016322_9 (AE016778) ubiquinol--cytochrome c reductase, cytochrome b
           [Pseudomonas putida KT2440]
          Length = 403

 Score =  764 bits (1973), Expect = 0.0
 Identities = 360/403 (89%), Positives = 388/403 (96%)

>gb|AAN53687.1|AE015508_3 (AE015508) ubiquinol-cytochrome c reductase, cytochrome b
           [Shewanella oneidensis MR-1]
          Length = 404

 Score =  622 bits (1605), Expect = e-178
 Identities = 289/396 (72%), Positives = 337/396 (85%)

>gb|AAM37307.1| (AE011882) ubiquinol cytochrome C oxidoreductase, cytochrome B
           subunit [Xanthomonas axonopodis pv. citri str. 306]
          Length = 419

 Score =  554 bits (1428), Expect = e-157
 Identities = 274/407 (67%), Positives = 321/407 (78%), Gaps = 6/407 (1%)






 
Structural Features:
COG1290, QcrB, Cytochrome b subunit of the bc complex 
[Energy production and conversion]
CD-Length = 381 residues,  97.1% aligned
Score =  336 bits (862), Expect = 8e-93
Identities = 197/387 (50%), Positives = 250/387 (64%), Gaps = 18/387 (4%)

cd00284, Cytochrome_b__N, Cytochrome b (N-terminus)/b6/petB
CD-Length = 200 residues, 100.0% aligned
Score =  217 bits (555), Expect = 3e-57
Identities = 109/201 (54%), Positives = 145/201 (72%), Gaps = 1/201 (0%)

KOG4663, Cytochrome b [Energy production and conversion]
CD-Length = 210 residues,  96.2% aligned
Score =  211 bits (538), Expect = 3e-55
Identities = 106/203 (52%), Positives = 145/203 (71%), Gaps = 1/203 (0%)

pfam00033, Cytochrom_B_N, Cytochrome b(N-terminal)/b6/petB.
CD-Length = 204 residues, 100.0% aligned
Score =  197 bits (502), Expect = 4e-51
Identities = 103/207 (49%), Positives = 141/207 (68%), Gaps = 3/207 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2683




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19828




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31469




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1340_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1340
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2447
                           PA4430_tr
                           translation of PA4430
                           403
                           99.99
                           99.99
                           0
                           2142.0
     

     
     
77825
                           gb|AAG07818.1|AE004857_9
                           (AE004857) probable cytochrome b [Pseudomonas aeruginosa PAO1]
                           403
                           99.99
                           99.99
                           0
                           2142.0
     

     
     
77826
                           gb|AAN66942.1|AE016322_9
                           (AE016778) ubiquinol--cytochrome c reductase, cytochrome b [Pseudomonas putida KT2440]
                           403
                           89.33
                           96.27
                           0
                           1973.0
     

     
     
77827
                           gb|AAN53687.1|AE015508_3
                           (AE015508) ubiquinol-cytochrome c reductase, cytochrome b [Shewanella oneidensis MR-1]
                           404
                           71.53
                           83.91
                           1
                           1603.0
     

     
     
77829
                           dbj|BAC58705.1|
                           (AP005074) ubiquinol-cytochrome c reductase, cytochrome b [Vibrio parahaemolyticus]
                           421
                           68.64
                           79.57
                           18
                           1552.0
     

     






      

          
GC ORFID: 44342How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4430Glimmer Score: 

          
Start: 4391503Stop: 4390292

          
Length: 1212


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4430 translation of PA4430Homolog Bit Score 829.0

          
Other Homologs:  t_PA4430 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGTTCATGGCTTGGGTCGATGCGCGTTTTCCCGCGACCAAGATGTGGGAAGACCATCTGAGCAAG 
TACTACGCACCGAAGAACTTCAACTTCTGGTATTTCTTCGGTTCCCTGGCGCTGCTGGTGCTGGTCAACCAG 
ATCCTCACCGGCATCTGGCTGACCATGAGCTTCACGCCGTCGGCCGAAGAGGCGTTCGCTTCCGTCGAATAC 
ATCATGCGCGATGTCGACTACGGCTGGATCATTCGCTACATGCACTCCACCGGTGCATCGGCGTTCTTCATC 
GTGGTCTACCTGCACATGTTCCGCGGCCTGCTCTACGGCTCCTATCAGAAGCCGCGCGAGCTGGTGTGGATC 
TTCGGCATGCTGATCTACCTGGCGCTGATGGCCGAGGCCTTCATGGGCTACCTGCTGCCTTGGGGTCAGATG 
TCCTACTGGGGCGCCCAGGTGATCATTTCCCTGTTCGGCGCGATTCCGGTGGTCGGCGAAGACCTGGCCCAG 
TGGATCCGCGGTGACTTCCTGATCTCCGGCATCACCCTGAACCGCTTCTTCGCCCTGCATGTGATCGCCCTG 
CCGATCGTCCTGCTCGGCCTGGTCGTGCTGCACATCCTGGCGCTGCACGAAGTCGGTTCGAACAACCCGGAC 
GGCGTTGACATCAAGAAGAAGAAGGACGAGAACGGCGTACCGCTGGACGGCATCGCGTTCCATCCGTACTAC 
ACCGTGAAGGATATCGTCGGTGTGGTGGTGTTCCTGTTCATCTTCTGCACCGTGATCTTCTTCTTCCCGGAA 
ATGGGCGGCTACTTCCTCGAGAAGCCCAACTTCGAGATGGCCAACCAGTTCAAGACCCCCGAGCACATCGCT 
CCGGTCTGGTACTTCACCCCGTTCTACGCGATCCTCCGCGCGGTTCCGGACAAGCTGATGGGCGTGGTGGCG 
ATGGGTGCGGCGATCGCCGTGCTGTTCGTCCTGCCGTGGCTGGATCGCAGCCCGGTTCGCTCGATCCGCTAC 
AAGGGCTGGCTGAGCAAGCTGTGGCTGGTGATCTTCGCGGTGTCCTTCGTGATCCTCGGCTACTACGGCGCC 
CAGGCTCCGAGCCCGCTGGGTACTACCCTGTCGCGCGTTTGCACCGTCCTGTATTTCGCCTTCTTCATCCTG 
ATGCCGTTCTACACCCGGATGGAGAAGACCAAACCGGTTCCGGAAAGGGTGACTGGCTGA