ViewGene
Locus Name:
GeneID:
Location:

GeneID:1338
TrivialName: PA14_43490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43490
PAO1 Ortholog Locus:PA1626
Sequence Length:1275
Protein Length:424
Start: 3873178
Stop: 3874452
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05015.1|AE004590_6 (AE004590) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 421/424 (99%), Positives = 422/424 (99%)
Sequence:
ATGACTCACGCCTTGAATGCCCGGCCGGGAGCGCACCCCGGCCATCCTCCGGAAGAACTGCTGATCGATGCC
GAAGTCGACGACGAACCAGCCCCGCCGGCGCCGCCGCTACGCCCCTGGCTGCTCCTGCTGGGCCTGGTGCTG
GTGGCGCTGAACCTGCGCCCGGCGCTGTCCAGCCTCGCCCCCCTGCTCAACCAGGTACGCGACGATACCGGC
CTCTCGGCCGCCGCCGCCGGCCTGCTGACCACCGCGCCGGTACTCTGCCTGGGGTTGTTCGCGCCGCTCGCG
CCGCGCCTGGCCCGGCGTATCGGCGCCGAACGCAGCGTGCTGCTGATCCTCTTCTGCCTGGCCGGCGGCATC
GTCCTGCGCAGCCTGTTCCCGGTGTTCGGCCTGTTCGCCGGCAGCGTCCTGGCCGGCGCCAGCATCGGCATC
ATCGGCGTGCTCCTGCCGGGCATCGTCAAACGCGACTTCCCGCGCCAGGCCGGGGTGATGACCGGGGTCTAC
ACCATGGCCCTGTGCCTGGGCGCAGCGCTCGCCGCCGGCGCCACCGCGCCGCTGGAGAAGCTCTTCGGCAAC
TGGGAACTGGCGCTGGCGTTCTGGTCGCTGCCGGCGATCCTCGCCGCCGCCTTCTGGCTGCCGCAGACCCGC
CAGGGCCAGCACGCCCATCGCCAGGCCTTCCGTGTCGTCGGCCTGTGGCGCGACCCGCTGGCCTGGCAGGTC
ACGCTGTACATGGGCCTGCAGTCGTCCCTGGCCTACATCGTCTTCGGTTGGCTGCCGTCGATCCTGATCGAC
CGCGGCATGACTGCGGTGGAAGCCGGCCTGGTGCTGTCCGGCTCGGTGATGCTGCAACTGATCACCGCCCTG
CTCGCGCCCTGGCTCGCCGCTCGCGCCAGGGACCAGCGCCTGGCGGTGGTGCTGGTGATGGCTACCACCCTC
GCCGGCCTGCTCGGCTTCCTCTATGCACCGCTGCCGACCATCTGGGGCTGGGCGGTCCTGCTCGGCCTCGGC
CAGGGCGGCACCTTCAGCATCGCCCTGGCGCTGATCGTCCTGCGCTCGCGCGACGCCCACGTCGCCTCGCAT
CTGTCGGGCATGGCCCAGGGCGTCGGCTACACCCTGGCGGCCATGGGGCCGTTCATGGTCGGCGTGGTCCAC
GACCTGACCGGCGGCTGGAACGCGGTCGGCTATATCTTCATCGGCGTCGCCATCGCCGCCACCCTGTTCGGC
CTCGGCGCCGGGCGCAGCCAGTACGTGGGGGCCCGCAGCGAACACCTGTAG
Translation:
MTHALNARPGAHPGHPPEELLIDAEVDDEPAPPAPPLRPWLLLLGLVLVALNLRPALSSLAPLLNQVRDDTG
LSAAAAGLLTTAPVLCLGLFAPLAPRLARRIGAERSVLLILFCLAGGIVLRSLFPVFGLFAGSVLAGASIGI
IGVLLPGIVKRDFPRQAGVMTGVYTMALCLGAALAAGATAPLEKLFGNWELALAFWSLPAILAAAFWLPQTR
QGQHAHRQAFRVVGLWRDPLAWQVTLYMGLQSSLAYIVFGWLPSILIDRGMTAVEAGLVLSGSVMLQLITAL
LAPWLAARARDQRLAVVLVMATTLAGLLGFLYAPLPTIWGWAVLLGLGQGGTFSIALALIVLRSRDAHVASH
LSGMAQGVGYTLAAMGPFMVGVVHDLTGGWNAVGYIFIGVAIAATLFGLGAGRSQYVGARSEHL*
AnnotationID:1347GeneID:1338
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 12:12:00
Gene Name:
Confidence Code:3
GeneProduct:putative cyanate MFS transporter
Cell Localization:()
Synonyms:PA1626
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2807
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66595.1|AE016287_6 (AE016777) cyanate MFS transporter [Pseudomonas putida KT2440]
          Length = 434

 Score =  567 bits (1462), Expect = e-161
 Identities = 288/408 (70%), Positives = 336/408 (82%), Gaps = 3/408 (0%)

>gb|AAO54785.1| (AE016860) cyanate MFS transporter [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 409

 Score =  561 bits (1447), Expect = e-159
 Identities = 283/405 (69%), Positives = 330/405 (81%), Gaps = 6/405 (1%)

>emb|CAD17818.1| (AL646080) PUTATIVE CYNX-RELATED TRANSPORT TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 426

 Score =  461 bits (1186), Expect = e-129
 Identities = 243/402 (60%), Positives = 303/402 (75%), Gaps = 13/402 (3%)






 
Structural Features:
COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]
CD-Length = 395 residues,  98.0% aligned
Score =  394 bits (1014), Expect = 1e-110
Identities = 211/387 (54%), Positives = 269/387 (69%), Gaps = 2/387 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2679




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19823




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37264




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1338_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1338
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2445
                           PA1626_tr
                           translation of PA1626
                           424
                           99.29
                           99.52
                           0
                           2146.0
     

     
     
77766
                           gb|AAG05015.1|AE004590_6
                           (AE004590) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           424
                           99.29
                           99.52
                           0
                           2146.0
     

     
     
77767
                           gb|AAN66595.1|AE016287_6
                           (AE016777) cyanate MFS transporter [Pseudomonas putida KT2440]
                           435
                           66.66
                           78.39
                           12
                           1457.0
     

     
     
77768
                           gb|AAO54785.1|
                           (AE016860) cyanate MFS transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           430
                           65.81
                           77.20
                           27
                           1453.0
     

     
     
77769
                           gb|AAC05645.1|
                           (AF033674) unknown [Pseudomonas marginalis pv. alfalfae]
                           440
                           62.27
                           71.81
                           36
                           1326.0
     

     






      

          
GC ORFID: 44340How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1626Glimmer Score: 

          
Start: 1080731Stop: 1079457

          
Length: 1275


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1626 translation of PA1626Homolog Bit Score 831.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4391 (ORF: BLASTX 541.0), t_PA1626 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCACGCCTTGAATGCCCGGCCGGGAGCGCACCCCGGCCATCCTCCGGAAGAACTGCTGATCGATGCC 
GAAGTCGACGACGAACCAGCCCCGCCGGCGCCGCCGCTACGCCCCTGGCTGCTCCTGCTGGGCCTGGTGCTG 
GTGGCGCTGAACCTGCGCCCGGCGCTGTCCAGCCTCGCCCCCCTGCTCAACCAGGTACGCGACGATACCGGC 
CTCTCGGCCGCCGCCGCCGGCCTGCTGACCACCGCGCCGGTACTCTGCCTGGGGTTGTTCGCGCCGCTCGCG 
CCGCGCCTGGCCCGGCGTATCGGCGCCGAACGCAGCGTGCTGCTGATCCTCTTCTGCCTGGCCGGCGGCATC 
GTCCTGCGCAGCCTGTTCCCGGTGTTCGGCCTGTTCGCCGGCAGCGTCCTGGCCGGCGCCAGCATCGGCATC 
ATCGGCGTGCTCCTGCCGGGCATCGTCAAACGCGACTTCCCGCGCCAGGCCGGGGTGATGACCGGGGTCTAC 
ACCATGGCCCTGTGCCTGGGCGCAGCGCTCGCCGCCGGCGCCACCGCGCCGCTGGAGAAGCTCTTCGGCAAC 
TGGGAACTGGCGCTGGCGTTCTGGTCGCTGCCGGCGATCCTCGCCGCCGCCTTCTGGCTGCCGCAGACCCGC 
CAGGGCCAGCACGCCCATCGCCAGGCCTTCCGTGTCGTCGGCCTGTGGCGCGACCCGCTGGCCTGGCAGGTC 
ACGCTGTACATGGGCCTGCAGTCGTCCCTGGCCTACATCGTCTTCGGTTGGCTGCCGTCGATCCTGATCGAC 
CGCGGCATGACTGCGGTGGAAGCCGGCCTGGTGCTGTCCGGCTCGGTGATGCTGCAACTGATCACCGCCCTG 
CTCGCGCCCTGGCTCGCCGCTCGCGCCAGGGACCAGCGCCTGGCGGTGGTGCTGGTGATGGCTACCACCCTC 
GCCGGCCTGCTCGGCTTCCTCTATGCACCGCTGCCGACCATCTGGGGCTGGGCGGTCCTGCTCGGCCTCGGC 
CAGGGCGGCACCTTCAGCATCGCCCTGGCGCTGATCGTCCTGCGCTCGCGCGACGCCCACGTCGCCTCGCAT 
CTGTCGGGCATGGCCCAGGGCGTCGGCTACACCCTGGCGGCCATGGGGCCGTTCATGGTCGGCGTGGTCCAC 
GACCTGACCGGCGGCTGGAACGCGGTCGGCTATATCTTCATCGGCGTCGCCATCGCCGCCACCCTGTTCGGC 
CTCGGCGCCGGGCGCAGCCAGTACGTGGGGGCCCGCAGCGAACACCTGTAG