ViewGene
Locus Name:
GeneID:
Location:

GeneID:1337
TrivialName: PA14_07760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07760
PAO1 Ortholog Locus:PA0594
Sequence Length:1293
Protein Length:430
Start: 666593
Stop: 665301
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03983.1|AE004495_7 (AE004495) peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PAO1]
Identities = 429/430 (99%), Positives = 429/430 (99%)
Sequence:
GTGAAGATCAAGCTATGTAACCGGCTGCGCCCCCTTGCATTGGGCGCAGCACTCCTTTGCTCCTTCGCGCAT
GCCGAAGTGGTACCACTGGACCGGGTCGTCGCCATCGTCGACAACGATGTGATCATGCAGAGCCAGCTCGAC
CAGCGCCTGCGTGAAGTGCACCAGACGCTGCTCAAGCGCGGTGCGCCGCTGCCGCCCGAGCACGTGCTGACC
CAGCAGGTGCTGGAACGCCTGATCATCGAGAACATCCAGCAGCAGATCGGCGACCGCTCCGGCATCCGCATC
TCCGACGAGGAGCTGAACCAGGCGATGGGCACCATCGCCCAGCGCAACGGCATGAGCCTGGAGCAGTTCCAG
GCCGCCCTCACCCGCGACGGCCTGTCCTACGCCGACGCCCGCGAGCAGGTCCGTCGCGAAATGGTGATCAGC
CGTGTGCGCCAGCGCCGGGTCGCCGAGCGCATCCAGGTCAGCGAGCAGGAGGTAAAGAATTTCCTCGCCTCG
GACATGGGCAAGATCCAGCTTTCCGAAGAGTACCGCCTGGCCAATATCCTGATCCCGGTGCCGGAAGCCGCG
TCCTCGGACGTGATCCAGGCCGCCGCAAGGCAGGCCCAGGAGCTTTACCAGCAGCTCAAGCAGGGCGCCGAC
TTCGGCCAACTGGCGATTTCCCGCTCGGCCGGCGACAACGCCCTGGAAGGCGGCGAGATCGGCTGGCGCAAG
GCCGCCCAGTTGCCGCAGCCGTTCGACAGCATGATCGGCTCCCTGGCCGTCGGCGACGTCACCGAGCCTGTC
CGCACCCCCGGCGGCTTCATCATCCTCAAGCTGGAAGAGAAGCGCGGCGGCAGCAAGATGGTCCGTGACGAA
GTGCATGTCCGCCATATCCTGCTCAAGCCCAGCGAAATCCGCAGCGAAGCGGAGACCGAGAAGCTGGCGCAG
AAGCTGTACGAGCGCATCCAGTCCGGGGAAGACTTCGGCGAACTGGCGAAGAGCTTCTCCGAAGATCCGGGT
TCCGCCCTCAACGGCGGCGACCTGAACTGGATCGACCCGGAAGCCCTGGTGCCCGAGTTCCGCCAGGTGATG
AACGATACCCCGCAGGGCGAGCTGTCCAAGCCGTTCCGCTCGCAGTTCGGCTGGCACATCCTGCAGGTCCTC
GGCCGTCGCGCCACCGACAGCAGCGAGAAGTTCCGCGAGCAGCAGGCGGTAAGCGTACTGCGCAACCGCAAG
TACGACGAGGAACTGCAAGCCTGGCTGCGGCAGATCCGCGACGAGGCCTACGTGGAAATCAAGCAGTGA
Translation:
MKIKLCNRLRPLALGAALLCSFAHAEVVPLDRVVAIVDNDVIMQSQLDQRLREVHQTLLKRGAPLPPEHVLT
QQVLERLIIENIQQQIGDRSGIRISDEELNQAMGTIAQRNGMSLEQFQAALTRDGLSYADAREQVRREMVIS
RVRQRRVAERIQVSEQEVKNFLASDMGKIQLSEEYRLANILIPVPEAASSDVIQAAARQAQELYQQLKQGAD
FGQLAISRSAGDNALEGGEIGWRKAAQLPQPFDSMIGSLAVGDVTEPVRTPGGFIILKLEEKRGGSKMVRDE
VHVRHILLKPSEIRSEAETEKLAQKLYERIQSGEDFGELAKSFSEDPGSALNGGDLNWIDPEALVPEFRQVM
NDTPQGELSKPFRSQFGWHILQVLGRRATDSSEKFREQQAVSVLRNRKYDEELQAWLRQIRDEAYVEIKQ*
AnnotationID:1346GeneID:1337
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 10:10:34
Gene Name:surA
Confidence Code:2
GeneProduct:peptidyl-prolyl cis-trans isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:survival protein SurA
Functional Category Confidence Code:5
COGs:pfam00639
Secondary Functional Category(ies):
EC Number:5.2.1.8
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66034.1|AE016232_7 (AE016775) survival protein SurA [Pseudomonas putida KT2440]
          Length = 439

 Score =  652 bits (1683), Expect = 0.0
 Identities = 324/430 (75%), Positives = 382/430 (88%), Gaps = 1/430 (0%)

>gb|AAO54095.1| (AE016857) peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 428

 Score =  612 bits (1577), Expect = e-174
 Identities = 306/418 (73%), Positives = 359/418 (85%), Gaps = 2/418 (0%)

>emb|CAD84793.1| (BX321859) PpiC-type peptidyl-prolyl cis-trans isomerase
           [Nitrosomonas europaea ATCC 19718]
          Length = 448

 Score =  318 bits (816), Expect = 3e-86
 Identities = 162/411 (39%), Positives = 263/411 (63%), Gaps = 3/411 (0%)






 
Structural Features:
pfam00639, Rotamase, PPIC-type PPIASE domain. 
CD-Length = 90 residues, 100.0% aligned
Score = 95.0 bits (236), Expect = 1e-20
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 3/93 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33889




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1337_cdd.html


    		




 
URL:

















    ReferenceID:35269




  
Author/Investigator(s):
        Li Y, Ferenci T.





  
Title:
        The Bacillus stearothermophilus NUB36 surA gene encodes a thermophilic sucrase related to Bacillus subtilis SacA.




  
PubMed:
        8757729


MedLine:
        




    
Source:
Microbiology. 1996 Jul;142 ( Pt 7):1651-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8757729









           
Homologs By Global Alignment 

           

       



     
Gene ID:1337
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2444
                           PA0594_tr
                           translation of PA0594
                           430
                           99.76
                           99.76
                           0
                           2148.0
     

     
     
77760
                           gb|AAG03983.1|AE004495_7
                           (AE004495) peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas aeruginosa PAO1]
                           430
                           99.53
                           99.76
                           0
                           2145.0
     

     
     
77761
                           gb|AAN66034.1|AE016232_7
                           (AE016775) survival protein SurA [Pseudomonas putida KT2440]
                           439
                           73.57
                           87.01
                           9
                           1679.0
     

     
     
77762
                           gb|AAO54095.1|
                           (AE016857) peptidyl-prolyl cis-trans isomerase SurA [Pseudomonas syringae pv. tomato str. DC3000]
                           440
                           69.54
                           81.59
                           22
                           1576.0
     

     
     
77763
                           gb|AAM35753.1|
                           (AE011718) peptidyl-prolyl cis-trans isomerase [Xanthomonas axonopodis pv. citri str. 306]
                           475
                           34.94
                           51.78
                           57
                           763.0
     

     






      

          
GC ORFID: 44339How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0594Glimmer Score: 

          
Start: 6467936Stop: 6466644

          
Length: 1293


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0594 translation of PA0594Homolog Bit Score 832.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6753 (ORF: BLASTX 637.0), t_PA0594 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAGATCAAGCTATGTAACCGGCTGCGCCCCCTTGCATTGGGCGCAGCACTCCTTTGCTCCTTCGCGCAT 
GCCGAAGTGGTACCACTGGACCGGGTCGTCGCCATCGTCGACAACGATGTGATCATGCAGAGCCAGCTCGAC 
CAGCGCCTGCGTGAAGTGCACCAGACGCTGCTCAAGCGCGGTGCGCCGCTGCCGCCCGAGCACGTGCTGACC 
CAGCAGGTGCTGGAACGCCTGATCATCGAGAACATCCAGCAGCAGATCGGCGACCGCTCCGGCATCCGCATC 
TCCGACGAGGAGCTGAACCAGGCGATGGGCACCATCGCCCAGCGCAACGGCATGAGCCTGGAGCAGTTCCAG 
GCCGCCCTCACCCGCGACGGCCTGTCCTACGCCGACGCCCGCGAGCAGGTCCGTCGCGAAATGGTGATCAGC 
CGTGTGCGCCAGCGCCGGGTCGCCGAGCGCATCCAGGTCAGCGAGCAGGAGGTAAAGAATTTCCTCGCCTCG 
GACATGGGCAAGATCCAGCTTTCCGAAGAGTACCGCCTGGCCAATATCCTGATCCCGGTGCCGGAAGCCGCG 
TCCTCGGACGTGATCCAGGCCGCCGCAAGGCAGGCCCAGGAGCTTTACCAGCAGCTCAAGCAGGGCGCCGAC 
TTCGGCCAACTGGCGATTTCCCGCTCGGCCGGCGACAACGCCCTGGAAGGCGGCGAGATCGGCTGGCGCAAG 
GCCGCCCAGTTGCCGCAGCCGTTCGACAGCATGATCGGCTCCCTGGCCGTCGGCGACGTCACCGAGCCTGTC 
CGCACCCCCGGCGGCTTCATCATCCTCAAGCTGGAAGAGAAGCGCGGCGGCAGCAAGATGGTCCGTGACGAA 
GTGCATGTCCGCCATATCCTGCTCAAGCCCAGCGAAATCCGCAGCGAAGCGGAGACCGAGAAGCTGGCGCAG 
AAGCTGTACGAGCGCATCCAGTCCGGGGAAGACTTCGGCGAACTGGCGAAGAGCTTCTCCGAAGATCCGGGT 
TCCGCCCTCAACGGCGGCGACCTGAACTGGATCGACCCGGAAGCCCTGGTGCCCGAGTTCCGCCAGGTGATG 
AACGATACCCCGCAGGGCGAGCTGTCCAAGCCGTTCCGCTCGCAGTTCGGCTGGCACATCCTGCAGGTCCTC 
GGCCGTCGCGCCACCGACAGCAGCGAGAAGTTCCGCGAGCAGCAGGCGGTAAGCGTACTGCGCAACCGCAAG 
TACGACGAGGAACTGCAAGCCTGGCTGCGGCAGATCCGCGACGAGGCCTACGTGGAAATCAAGCAGTGA