ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1336

TrivialName: PA14_03450

AnnotatorUID: danlee

Modification Date/Time: 2006-06-02 15:03:19

LocusName: PA14_03450

PAO1 Ortholog Locus: PA0266

Sequence Length: 1281

Protein Length: 426

Start: 315359

Stop: 316639

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03655.1|AE004465_1 (AE004465) 4-aminobutyrate aminotransferase [Pseudomonas aeruginosa PAO1] Identities = 425/426 (99%), Positives = 426/426 (100%)

Sequence:

ATGAGCAAGACCAACGAATCCCTGCTGAAGCGTCGCCAGGCCGCGGTACCCCGCGGCGTGGGCCAGATCCAC
CCGGTCGTCGCCGAGCGCGCCGAGAACTCCACCGTCTGGGACGTGGAAGGCCGCGAGTACATCGACTTCGCC
GGCGGCATCGCCGTGCTGAACACCGGCCACCTGCATCCGAAGGTGATCGCCGCGGTCCAGGAGCAACTGGGC
AAGCTGTCCCACACCTGCTTCCAGGTGCTGGCCTACGAACCCTACATCGAGCTGGCCGAGGAAATCGCCAAG
CGCGTGCCGGGCGACTTCCCGAAGAAGACCCTGCTGGTCACCTCCGGCTCCGAAGCCGTGGAGAACGCCGTC
AAGATCGCCCGCGCCGCCACCGGCCGCGCTGGCGTGATCGCCTTCACCGGCGCGTACCACGGCCGCACCATG
ATGACCCTGGGCCTGACCGGCAAGGTGGTCCCGTACTCCGCCGGCATGGGCCTGATGCCGGGCGGCATCTTC
CGCGCCCTGGCGCCCTGCGAGCTGCACGGCGTGAGCGAGGACGACTCCATCGCCAGCATCGAGCGCATCTTC
AAGAACGATGCCCAGCCCCAGGACATCGCCGCGATCATCATCGAGCCGGTGCAGGGCGAGGGTGGCTTCTAC
GTCAACTCCAAGTCCTTCATGCAGCGCCTGCGTGCCCTGTGCGACCAGCACGGCATCCTGCTGATCGCCGAC
GAAGTGCAGACCGGCGCCGGCCGTACCGGCACCTTCTTCGCTACCGAGCAACTGGGCATCGTTCCTGACCTG
ACCACCTTCGCCAAGTCGGTCGGCGGCGGCTTCCCGATCTCCGGCGTGGCCGGCAAGGCCGAGATCATGGAC
GCCATCGCGCCCGGCGGCCTGGGCGGCACCTATGCCGGCAGCCCGATCGCCTGCGCCGCGGCACTGGCCGTG
CTGAAGGTGTTCGAGGAAGAGAAGCTGCTGGAACGTTCGCAAGCCCTCGGCGAGCGCCTCAAGGCCGGCCTG
CGCGAGATCCAGGCCAAGCACAAGGTGATCGGCGACGTTCGTGGCCTGGGTTCGATGGTGGCCATCGAGCTG
TTCGAGGGCGGCGATACCCACAAGCCGGCCGCCGAGCTGGTCAGCAAGATCGTCGTCCGTGCGCGCGAGAAG
GGCCTGATCCTGCTCTCCTGCGGCACCTACTACAACGTCATCCGCTTCCTCATGCCCGTCACCATCCCCGAC
GCGCAACTGGAGAAGGGCCTGGCCATCCTGGCCGAGTGCTTCGACGAACTCGCTTAA

Translation:

MSKTNESLLKRRQAAVPRGVGQIHPVVAERAENSTVWDVEGREYIDFAGGIAVLNTGHLHPKVIAAVQEQLG
KLSHTCFQVLAYEPYIELAEEIAKRVPGDFPKKTLLVTSGSEAVENAVKIARAATGRAGVIAFTGAYHGRTM
MTLGLTGKVVPYSAGMGLMPGGIFRALAPCELHGVSEDDSIASIERIFKNDAQPQDIAAIIIEPVQGEGGFY
VNSKSFMQRLRALCDQHGILLIADEVQTGAGRTGTFFATEQLGIVPDLTTFAKSVGGGFPISGVAGKAEIMD
AIAPGGLGGTYAGSPIACAAALAVLKVFEEEKLLERSQALGERLKAGLREIQAKHKVIGDVRGLGSMVAIEL
FEGGDTHKPAAELVSKIVVRAREKGLILLSCGTYYNVIRFLMPVTIPDAQLEKGLAILAECFDELA*

AnnotationID:1345 GeneID:1336

AnnotatorUID: danlee

Modification Date/Time: 2005-07-28 16:04:23

Gene Name: gabT

Confidence Code: 2

GeneProduct: 4-aminobutyrate aminotransferase

Cell Localization: (1) Cytoplasmic

Synonyms: PA0266

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name: gabA transaminase

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): Carbon compound catabolism; Central intermediary metabolim

EC Number:

Status: ACTIVE

Pathway:

Alanine and Aspartate metabolism; Butanoate metabolism;
Glutamate metabolism; Propanoate metabolism; Beta-Alanine metabolism

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2675

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19819

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1336

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2443 PA0266_tr translation of PA0266 426 99.76 99.99 0 2148.0

77701 gb|AAG03655.1|AE004465_1 (AE004465) 4-aminobutyrate aminotransferase [Pseudomonas aeruginosa PAO1] 426 99.76 99.99 0 2148.0

77702 gb|AAN65846.1|AE016213_2 (AE016774) 4-aminobutyrate aminotransferase [Pseudomonas putida KT2440] 426 80.04 89.67 1 1759.0

77703 gb|AAK97868.1|AF299291_2 (AF299291) delta-aminovalerate aminotransferase DavT [Pseudomonas putida] 426 80.04 89.67 1 1759.0

77704 gb|AAO53846.1| (AE016857) 4-aminobutyrate aminotransferase [Pseudomonas syringae pv. tomato str. DC3000] 426 78.40 89.20 0 1739.0

GC ORFID: `44338`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0266`	Glimmer Score:
Start: `6116700`	Stop: `6117980`
Length: `1281`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA0266 translation of PA0266`	Homolog Bit Score `832.0`
Other Homologs: `psyr_15may02_Scaffold2_revised_gene4043 (ORF: BLASTX 680.0), psyr_15may02_Scaffold2_revised_gene3991 (ORF: BLASTX 418.0), psyr_15may02_Scaffold8_revised_gene7581 (ORF: BLASTX 345.0), t_PA0266 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCAAGACCAACGAATCCCTGCTGAAGCGTCGCCAGGCCGCGGTACCCCGCGGCGTGGGCCAGATCCAC CCGGTCGTCGCCGAGCGCGCCGAGAACTCCACCGTCTGGGACGTGGAAGGCCGCGAGTACATCGACTTCGCC GGCGGCATCGCCGTGCTGAACACCGGCCACCTGCATCCGAAGGTGATCGCCGCGGTCCAGGAGCAACTGGGC AAGCTGTCCCACACCTGCTTCCAGGTGCTGGCCTACGAACCCTACATCGAGCTGGCCGAGGAAATCGCCAAG CGCGTGCCGGGCGACTTCCCGAAGAAGACCCTGCTGGTCACCTCCGGCTCCGAAGCCGTGGAGAACGCCGTC AAGATCGCCCGCGCCGCCACCGGCCGCGCTGGCGTGATCGCCTTCACCGGCGCGTACCACGGCCGCACCATG ATGACCCTGGGCCTGACCGGCAAGGTGGTCCCGTACTCCGCCGGCATGGGCCTGATGCCGGGCGGCATCTTC CGCGCCCTGGCGCCCTGCGAGCTGCACGGCGTGAGCGAGGACGACTCCATCGCCAGCATCGAGCGCATCTTC AAGAACGATGCCCAGCCCCAGGACATCGCCGCGATCATCATCGAGCCGGTGCAGGGCGAGGGTGGCTTCTAC GTCAACTCCAAGTCCTTCATGCAGCGCCTGCGTGCCCTGTGCGACCAGCACGGCATCCTGCTGATCGCCGAC GAAGTGCAGACCGGCGCCGGCCGTACCGGCACCTTCTTCGCTACCGAGCAACTGGGCATCGTTCCTGACCTG ACCACCTTCGCCAAGTCGGTCGGCGGCGGCTTCCCGATCTCCGGCGTGGCCGGCAAGGCCGAGATCATGGAC GCCATCGCGCCCGGCGGCCTGGGCGGCACCTATGCCGGCAGCCCGATCGCCTGCGCCGCGGCACTGGCCGTG CTGAAGGTGTTCGAGGAAGAGAAGCTGCTGGAACGTTCGCAAGCCCTCGGCGAGCGCCTCAAGGCCGGCCTG CGCGAGATCCAGGCCAAGCACAAGGTGATCGGCGACGTTCGTGGCCTGGGTTCGATGGTGGCCATCGAGCTG TTCGAGGGCGGCGATACCCACAAGCCGGCCGCCGAGCTGGTCAGCAAGATCGTCGTCCGTGCGCGCGAGAAG GGCCTGATCCTGCTCTCCTGCGGCACCTACTACAACGTCATCCGCTTCCTCATGCCCGTCACCATCCCCGAC GCGCAACTGGAGAAGGGCCTGGCCATCCTGGCCGAGTGCTTCGACGAACTCGCTTAA