|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG08835.1|AE004958_5 (AE004958) ABC subunit of A-band LPS efflux transporter [Pseudomonas aeruginosa PAO1]
Identities = 420/421 (99%), Positives = 421/421 (100%)
|
Sequence:
ATGGGACAGATACGCGTATCCGGCCTCGGCAAGGCCTACAAGCAGTATCCCAATCGCTGGAGCCGGTTGTTC
GAATGGCTGGTGCCTTTCAGCCCTCCGCGCCACCACCTGCACTGGATCCTGCGCGAGGTCGAGTTCACCATC
GAGCCGGGCGAAGCGGTCGGCATCGTCGGGGTCAACGGCGCCGGCAAGAGCACCCTGCTGAAGATGATCGCC
GGCACCACCCAGCCGACCTGCGGCGAGATCCGCGTGGCCGGCCGGGTCGCCGCGCTGCTCGAGCTGGGCATG
GGCTTCCACCCGGACTTCACCGGCCGGCAGAACGTCTTCATGGCCGGGCAACTGCTGGGCATGCAGGTCGAG
GAAATCCAGGCGCTGATGCCGGAGATCGAGGCCTTCGCCGAAATCGGCGAGGCCATCGAGCAACCGGTGCGC
ACCTACTCCAGCGGCATGCAGATGCGCCTGGCGTTCAGCGTGGCGACTGCCCGGCGGCCGGACATCCTGATC
GTCGACGAGGCCCTGTCGGTTGGCGATGCCTATTTCCAGCACAAGAGCTTCGAGCGCATCCGCAGTTTCCGC
AAGGCCGGCACCACCCTGCTGATCGTTTCCCACGACCGCTCGGCGATCCAGTCCATCTGCGACTCCGCGATC
CTCCTGGAGCAGGGACGGATGGCCATGCGCGGGCGGCCGGAAGAGGTGATGGACTACTACAACGCCCTGCTC
GCCGAGCGCGAGGGGCAGACCGTGCGCCAGGAAATGCTCGCCGACGGCCAGGTGCGGACGATTTCCGGCACC
GGCGAGGCAGCGATCCTCGACGTACGGATGGTCGACCAGCGGCAGCGCGCGCTGGAGGTGGTCGAGGTAGGC
CAGGCGGTGACGCTGGAAGTCGAAGTCGAGGTTCGCCAGGACATCGAGCGGCTGATCCTCGGCTTCATGATC
AAGGACCGCCTCGGCCAGCCGATGTACGGGATCAATACCCACCGCCTGGACAAGGCCCTCACCGACCTGAAG
GCCGGCGAGCGCATCACCTACCGCTTCGCCTTCGACATGCGCCTGGGCAAGGGGCACTACTCGGTGGCGCTG
AGCCTGTCGCGGCTGGACTCGCACCTGGACCGCAACTTCGAATGGCGCGACTACGGCCTGGTCTTCCATGTC
ATCAACAACCGCCAGGAAGACTTCGTCGGTTGCTCCTGGCTGGGCGCCGAAACCCATATCAGCCGCTCCGGC
GAGGCGGCTCTGGACCCCACTTCCGCGGAGAGCACTCCATGA |
Translation:
MGQIRVSGLGKAYKQYPNRWSRLFEWLVPFSPPRHHLHWILREVEFTIEPGEAVGIVGVNGAGKSTLLKMIA
GTTQPTCGEIRVAGRVAALLELGMGFHPDFTGRQNVFMAGQLLGMQVEEIQALMPEIEAFAEIGEAIEQPVR
TYSSGMQMRLAFSVATARRPDILIVDEALSVGDAYFQHKSFERIRSFRKAGTTLLIVSHDRSAIQSICDSAI
LLEQGRMAMRGRPEEVMDYYNALLAEREGQTVRQEMLADGQVRTISGTGEAAILDVRMVDQRQRALEVVEVG
QAVTLEVEVEVRQDIERLILGFMIKDRLGQPMYGINTHRLDKALTDLKAGERITYRFAFDMRLGKGHYSVAL
SLSRLDSHLDRNFEWRDYGLVFHVINNRQEDFVGCSWLGAETHISRSGEAALDPTSAESTP* |
AnnotationID:1344 | GeneID:1335 |
|
Modification Date/Time: |
2005-03-17 20:08:30 |
|
|
|
GeneProduct: | ABC subunit of A-band LPS efflux transporter |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (7) Cell wall / LPS / capsule |
|
Alternate Gene Product Name: | |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | transport of small molecules |
|
|
|
|
Homology: | >dbj|BAA28325.1| (AB010150) ATP binding component of ABC-transporter [Escherichia
coli]
Length = 404
Score = 519 bits (1336), Expect = e-146
Identities = 249/405 (61%), Positives = 323/405 (79%), Gaps = 1/405 (0%)
>gb|AAN67399.1|AE016366_7 (AE016780) lipopolysaccharide ABC export system, ATP-binding
protein [Pseudomonas putida KT2440]
Length = 405
Score = 455 bits (1171), Expect = e-127
Identities = 228/399 (57%), Positives = 295/399 (73%), Gaps = 3/399 (0%) |
|
Structural Features: | COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system,
ATPase component
[Carbohydrate transport and metabolism /
Cell envelope biogenesis, outer membrane]
CD-Length = 249 residues, 100.0% aligned
Score = 313 bits (804), Expect = 2e-86
Identities = 118/249 (47%), Positives = 163/249 (65%), Gaps = 2/249 (0%)
cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain
CD-Length = 217 residues, 93.1% aligned
Score = 138 bits (349), Expect = 1e-33
Identities = 64/203 (31%), Positives = 111/203 (54%), Gaps = 14/203 (6%)
pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues, 100.0% aligned
Score = 129 bits (325), Expect = 7e-31
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 12/183 (6%) |
|
|
|
|
|