ViewGene

Locus Name:
GeneID:
Location:

GeneID:1335
TrivialName: PA14_71940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71940
PAO1 Ortholog Locus:PA5450
Sequence Length:1266
Protein Length:421
Start: 6413789
Stop: 6412524
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08835.1|AE004958_5 (AE004958) ABC subunit of A-band LPS efflux transporter [Pseudomonas aeruginosa PAO1]
Identities = 420/421 (99%), Positives = 421/421 (100%)
Sequence:
ATGGGACAGATACGCGTATCCGGCCTCGGCAAGGCCTACAAGCAGTATCCCAATCGCTGGAGCCGGTTGTTC
GAATGGCTGGTGCCTTTCAGCCCTCCGCGCCACCACCTGCACTGGATCCTGCGCGAGGTCGAGTTCACCATC
GAGCCGGGCGAAGCGGTCGGCATCGTCGGGGTCAACGGCGCCGGCAAGAGCACCCTGCTGAAGATGATCGCC
GGCACCACCCAGCCGACCTGCGGCGAGATCCGCGTGGCCGGCCGGGTCGCCGCGCTGCTCGAGCTGGGCATG
GGCTTCCACCCGGACTTCACCGGCCGGCAGAACGTCTTCATGGCCGGGCAACTGCTGGGCATGCAGGTCGAG
GAAATCCAGGCGCTGATGCCGGAGATCGAGGCCTTCGCCGAAATCGGCGAGGCCATCGAGCAACCGGTGCGC
ACCTACTCCAGCGGCATGCAGATGCGCCTGGCGTTCAGCGTGGCGACTGCCCGGCGGCCGGACATCCTGATC
GTCGACGAGGCCCTGTCGGTTGGCGATGCCTATTTCCAGCACAAGAGCTTCGAGCGCATCCGCAGTTTCCGC
AAGGCCGGCACCACCCTGCTGATCGTTTCCCACGACCGCTCGGCGATCCAGTCCATCTGCGACTCCGCGATC
CTCCTGGAGCAGGGACGGATGGCCATGCGCGGGCGGCCGGAAGAGGTGATGGACTACTACAACGCCCTGCTC
GCCGAGCGCGAGGGGCAGACCGTGCGCCAGGAAATGCTCGCCGACGGCCAGGTGCGGACGATTTCCGGCACC
GGCGAGGCAGCGATCCTCGACGTACGGATGGTCGACCAGCGGCAGCGCGCGCTGGAGGTGGTCGAGGTAGGC
CAGGCGGTGACGCTGGAAGTCGAAGTCGAGGTTCGCCAGGACATCGAGCGGCTGATCCTCGGCTTCATGATC
AAGGACCGCCTCGGCCAGCCGATGTACGGGATCAATACCCACCGCCTGGACAAGGCCCTCACCGACCTGAAG
GCCGGCGAGCGCATCACCTACCGCTTCGCCTTCGACATGCGCCTGGGCAAGGGGCACTACTCGGTGGCGCTG
AGCCTGTCGCGGCTGGACTCGCACCTGGACCGCAACTTCGAATGGCGCGACTACGGCCTGGTCTTCCATGTC
ATCAACAACCGCCAGGAAGACTTCGTCGGTTGCTCCTGGCTGGGCGCCGAAACCCATATCAGCCGCTCCGGC
GAGGCGGCTCTGGACCCCACTTCCGCGGAGAGCACTCCATGA
Translation:
MGQIRVSGLGKAYKQYPNRWSRLFEWLVPFSPPRHHLHWILREVEFTIEPGEAVGIVGVNGAGKSTLLKMIA
GTTQPTCGEIRVAGRVAALLELGMGFHPDFTGRQNVFMAGQLLGMQVEEIQALMPEIEAFAEIGEAIEQPVR
TYSSGMQMRLAFSVATARRPDILIVDEALSVGDAYFQHKSFERIRSFRKAGTTLLIVSHDRSAIQSICDSAI
LLEQGRMAMRGRPEEVMDYYNALLAEREGQTVRQEMLADGQVRTISGTGEAAILDVRMVDQRQRALEVVEVG
QAVTLEVEVEVRQDIERLILGFMIKDRLGQPMYGINTHRLDKALTDLKAGERITYRFAFDMRLGKGHYSVAL
SLSRLDSHLDRNFEWRDYGLVFHVINNRQEDFVGCSWLGAETHISRSGEAALDPTSAESTP*
AnnotationID:1344GeneID:1335
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 20:08:30
Gene Name:wzt
Confidence Code:1
GeneProduct:ABC subunit of A-band LPS efflux transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1134,cd00267,pfam00005
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAA28325.1| (AB010150) ATP binding component of ABC-transporter [Escherichia
           coli]
          Length = 404

 Score =  519 bits (1336), Expect = e-146
 Identities = 249/405 (61%), Positives = 323/405 (79%), Gaps = 1/405 (0%)

>gb|AAN67399.1|AE016366_7 (AE016780) lipopolysaccharide ABC export system, ATP-binding
           protein [Pseudomonas putida KT2440]
          Length = 405

 Score =  455 bits (1171), Expect = e-127
 Identities = 228/399 (57%), Positives = 295/399 (73%), Gaps = 3/399 (0%)
Structural Features:
COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, 
ATPase component 
[Carbohydrate transport and metabolism / 
Cell envelope biogenesis, outer membrane]
CD-Length = 249 residues, 100.0% aligned
Score =  313 bits (804), Expect = 2e-86
Identities = 118/249 (47%), Positives = 163/249 (65%), Gaps = 2/249 (0%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter 
nucleotide-binding domain
CD-Length = 217 residues,  93.1% aligned
Score =  138 bits (349), Expect = 1e-33
Identities = 64/203 (31%), Positives = 111/203 (54%), Gaps = 14/203 (6%)

pfam00005, ABC_tran, ABC transporter.
CD-Length = 183 residues, 100.0% aligned
Score =  129 bits (325), Expect = 7e-31
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Genomic Context:
Comment:
ReferenceID:2673
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19817
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34662
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1335_cdd.html
URL:
ReferenceID:35624
Author/Investigator(s): Godfroid F, Cloeckaert A, Taminiau B, Danese I, Tibor A, de Bolle X, Mertens P, Letesson JJ.
Title: Genetic organisation of the lipopolysaccharide O-antigen biosynthesis region of brucella melitensis 16M (wbk).
PubMed: 11081580
MedLine:
Source:
Res Microbiol. 2000 Oct;151(8):655-68.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11081580
Homologs By Global Alignment
Gene ID:1335

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2441 PA5450_tr translation of PA5450 421 99.76 99.99 0 2150.0
77646 gb|AAG08835.1|AE004958_5 (AE004958) ABC subunit of A-band LPS efflux transporter [Pseudomonas aeruginosa PAO1] 421 99.76 99.99 0 2150.0
77647 gb|AAC16668.1| (U63723) ATP-binding protein [Pseudomonas aeruginosa] 421 99.76 99.99 0 2150.0
77648 dbj|BAA28325.1| (AB010150) ATP binding component of ABC-transporter [Escherichia coli] 421 59.14 76.72 17 1338.0
77649 gb|AAF04381.1|AF189151_4 (AF189151) Wzt [Klebsiella pneumoniae] 421 58.66 75.53 17 1327.0
GC ORFID: 44337How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5450Glimmer Score:
Start: 5677478Stop: 5676213
Length: 1266
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5450 translation of PA5450Homolog Bit Score 832.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4277 (ORF: BLASTX 458.0), t_PA1386 (ORF: BLASTX 229.0), t_PA5450 (ORF: GLIMMER)
GC ORF Sequence
ATGGGACAGATACGCGTATCCGGCCTCGGCAAGGCCTACAAGCAGTATCCCAATCGCTGGAGCCGGTTGTTC
GAATGGCTGGTGCCTTTCAGCCCTCCGCGCCACCACCTGCACTGGATCCTGCGCGAGGTCGAGTTCACCATC
GAGCCGGGCGAAGCGGTCGGCATCGTCGGGGTCAACGGCGCCGGCAAGAGCACCCTGCTGAAGATGATCGCC
GGCACCACCCAGCCGACCTGCGGCGAGATCCGCGTGGCCGGCCGGGTCGCCGCGCTGCTCGAGCTGGGCATG
GGCTTCCACCCGGACTTCACCGGCCGGCAGAACGTCTTCATGGCCGGGCAACTGCTGGGCATGCAGGTCGAG
GAAATCCAGGCGCTGATGCCGGAGATCGAGGCCTTCGCCGAAATCGGCGAGGCCATCGAGCAACCGGTGCGC
ACCTACTCCAGCGGCATGCAGATGCGCCTGGCGTTCAGCGTGGCGACTGCCCGGCGGCCGGACATCCTGATC
GTCGACGAGGCCCTGTCGGTTGGCGATGCCTATTTCCAGCACAAGAGCTTCGAGCGCATCCGCAGTTTCCGC
AAGGCCGGCACCACCCTGCTGATCGTTTCCCACGACCGCTCGGCGATCCAGTCCATCTGCGACTCCGCGATC
CTCCTGGAGCAGGGACGGATGGCCATGCGCGGGCGGCCGGAAGAGGTGATGGACTACTACAACGCCCTGCTC
GCCGAGCGCGAGGGGCAGACCGTGCGCCAGGAAATGCTCGCCGACGGCCAGGTGCGGACGATTTCCGGCACC
GGCGAGGCAGCGATCCTCGACGTACGGATGGTCGACCAGCGGCAGCGCGCGCTGGAGGTGGTCGAGGTAGGC
CAGGCGGTGACGCTGGAAGTCGAAGTCGAGGTTCGCCAGGACATCGAGCGGCTGATCCTCGGCTTCATGATC
AAGGACCGCCTCGGCCAGCCGATGTACGGGATCAATACCCACCGCCTGGACAAGGCCCTCACCGACCTGAAG
GCCGGCGAGCGCATCACCTACCGCTTCGCCTTCGACATGCGCCTGGGCAAGGGGCACTACTCGGTGGCGCTG
AGCCTGTCGCGGCTGGACTCGCACCTGGACCGCAACTTCGAATGGCGCGACTACGGCCTGGTCTTCCATGTC
ATCAACAACCGCCAGGAAGACTTCGTCGGTTGCTCCTGGCTGGGCGCCGAAACCCATATCAGCCGCTCCGGC
GAGGCGGCTCTGGACCCCACTTCCGCGGAGAGCACTCCATGA