ViewGene

Locus Name:
GeneID:
Location:

GeneID:1334
TrivialName: PA14_67790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67790
PAO1 Ortholog Locus:PA5133
Sequence Length:1287
Protein Length:428
Start: 6053126
Stop: 6054412
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08518.1|AE004926_8 (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 428/428 (100%), Positives = 428/428 (100%)
Sequence:
ATGCTCCGCCTCCTTCCTCTCCTGCTATCCCTCGCCTGTCTCGCTCCGGCCTTCGCCGACGAGCGCGCCGAC
ACCCAACGCCAGCTGGAACAGACGCAGAAGGACATCGGCGAGCTGAAGAAGCTGCTGGACGGCATCCAGCAG
GAAAAGAGCGGCGTGCAGAAGCAGCTGAAGTCCACCGAGACCGAGATGGGCGACCTGGAAAAACAGATCAAG
GCCCTGCAGGACGAGCTGGACAAGAGCGAAGCCGAGCTGAAACGGCTGGATGGGGAGAAAAAAAAACTCCAG
GACGCGCGCATTGAGCAACAGCGCCTCCTCGCCATCCAGGCCCGCGCTGCCTACCAGAGCGGACGCGAGGAA
TACCTGAAGCTGCTGCTGAACCAGGAACACCCGGAAAAATTCAGCCGTACCCTCACCTACTACGACTACATC
AACAAAGCCCGTCTCGAACAGCTCGCCAGCTTCAACGAAACCCTCCGCCAGTTGGCCAACGTCGAGCAGGAC
ATCTCTGCGCAGAAAGCCGAACAACTGAGCAAGCAAGGCGAGCTGGACAGCCGCCGCGAGGCGCTGGCAGCG
ACCCGCAAGGAGCGCCAGCAAGCCCTGGCCAAGCTGAACAGCGACTACCGCGAACGCGACCAGAAGCTCAAG
TCCCGCCAACAGGACCAGGCCGAGCTGGCCAAGGTACTGCGGACCATCGAGGAAACCCTGGCCCGCCAGGCC
CGCGAAGCCGCCGCCGCGGCGGAGCGCGAGCGCCAGCGCGCGCTGGCCGCCGAACGCGAGCGTGCGCGCCAG
CAGCAGGCCGCCCCCGGACGAGTCACCAGCCCGCCGCGCGAACCTGCGCCGGGCCCGCTGGTCTCAAGCACT
GGCGCGGTCTACGGCGGCGCGTTCGGCTCGGCCCGCGGCAAGCTGCCGTGGCCGGTGAATGGCCGCGTCGTG
GCGCGCTTCGGCAGCCAGCGCGGCGACGATCCGCGGGCGAAATGGGACGGCGTACTGATTTCGGCGAGCGCC
GGCAGCACCGTCCGCGCGGTGCACGGCGGACGCGTGGTATTCGCCGACTGGTTGCGCGGAGCCGGCCTGTTG
GTCATCCTCGACCACGGTGGCGGCTACCTCAGCCTTTATGGCCATAATCAAAGCCTGCTGAAAGACGCCGGC
GACACCGTGAAGGCCGGCGACCCGATCGCCACCGTTGGAACCAGCGGCGGCCAGAGTAGCCCGGCCGTGTAC
TTCGCCATTCGCCATCAGGGCCGCCCGGCGGACCCTACTACCTGGTGCCGCGCGCAGGGATAG
Translation:
MLRLLPLLLSLACLAPAFADERADTQRQLEQTQKDIGELKKLLDGIQQEKSGVQKQLKSTETEMGDLEKQIK
ALQDELDKSEAELKRLDGEKKKLQDARIEQQRLLAIQARAAYQSGREEYLKLLLNQEHPEKFSRTLTYYDYI
NKARLEQLASFNETLRQLANVEQDISAQKAEQLSKQGELDSRREALAATRKERQQALAKLNSDYRERDQKLK
SRQQDQAELAKVLRTIEETLARQAREAAAAAERERQRALAAERERARQQQAAPGRVTSPPREPAPGPLVSST
GAVYGGAFGSARGKLPWPVNGRVVARFGSQRGDDPRAKWDGVLISASAGSTVRAVHGGRVVFADWLRGAGLL
VILDHGGGYLSLYGHNQSLLKDAGDTVKAGDPIATVGTSGGQSSPAVYFAIRHQGRPADPTTWCRAQG*
AnnotationID:1343GeneID:1334
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:27
Gene Name:
Confidence Code:3
GeneProduct:putative membrane-bound metallopeptidase
Cell Localization:()
Synonyms:PA5133
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:putative peptidase, M23/M37 family
Functional Category Confidence Code:5
COGs:COG4942,COG0739
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70622.1|AE016705_2 (AE016793) peptidase, M23/M37 family [Pseudomonas putida KT2440]
          Length = 438

 Score =  576 bits (1484), Expect = e-163
 Identities = 301/442 (68%), Positives = 366/442 (82%), Gaps = 22/442 (4%)

>gb|AAO58754.1| (AE016875) peptidase, M23/M37 family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 440

 Score =  560 bits (1442), Expect = e-159
 Identities = 288/440 (65%), Positives = 348/440 (79%), Gaps = 12/440 (2%)

Structural Features:
COG4942, COG4942, Membrane-bound metallopeptidase 
[Cell division and chromosome partitioning]
CD-Length = 420 residues,  97.4% aligned
Score =  327 bits (839), Expect = 2e-90
Identities = 176/426 (41%), Positives = 250/426 (58%), Gaps = 17/426 (3%)

COG0739, NlpD, Membrane proteins related to metalloendopeptidases 
[Cell envelope biogenesis, outer membrane]
CD-Length = 277 residues,  91.3% aligned
Score = 97.6 bits (241), Expect = 3e-21
Identities = 67/253 (26%), Positives = 102/253 (40%), Gaps = 9/253 (3%)
Genomic Context:
Comment:
ReferenceID:2671
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19815
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34928
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1334_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1334

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2440 PA5133_tr translation of PA5133 428 99.99 99.99 0 2150.0
77643 gb|AAG08518.1|AE004926_8 (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 428 99.99 99.99 0 2150.0
77644 gb|AAN70622.1|AE016705_2 (AE016793) peptidase, M23/M37 family [Pseudomonas putida KT2440] 445 67.64 82.24 24 1505.0
77645 gb|AAO58754.1| (AE016875) peptidase, M23/M37 family [Pseudomonas syringae pv. tomato str. DC3000] 445 66.06 79.32 22 1459.0
GC ORFID: 44336How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5133Glimmer Score:
Start: 5316811Stop: 5318097
Length: 1287
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5133 translation of PA5133Homolog Bit Score 832.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6931 (ORF: BLASTX 576.0), t_PA5133 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCCGCCTCCTTCCTCTCCTGCTATCCCTCGCCTGTCTCGCTCCGGCCTTCGCCGACGAGCGCGCCGAC
ACCCAACGCCAGCTGGAACAGACGCAGAAGGACATCGGCGAGCTGAAGAAGCTGCTGGACGGCATCCAGCAG
GAAAAGAGCGGCGTGCAGAAGCAGCTGAAGTCCACCGAGACCGAGATGGGCGACCTGGAAAAACAGATCAAG
GCCCTGCAGGACGAGCTGGACAAGAGCGAAGCCGAGCTGAAACGGCTGGATGGGGAGAAAAAAAAACTCCAG
GACGCGCGCATTGAGCAACAGCGCCTCCTCGCCATCCAGGCCCGCGCTGCCTACCAGAGCGGACGCGAGGAA
TACCTGAAGCTGCTGCTGAACCAGGAACACCCGGAAAAATTCAGCCGTACCCTCACCTACTACGACTACATC
AACAAAGCCCGTCTCGAACAGCTCGCCAGCTTCAACGAAACCCTCCGCCAGTTGGCCAACGTCGAGCAGGAC
ATCTCTGCGCAGAAAGCCGAACAACTGAGCAAGCAAGGCGAGCTGGACAGCCGCCGCGAGGCGCTGGCAGCG
ACCCGCAAGGAGCGCCAGCAAGCCCTGGCCAAGCTGAACAGCGACTACCGCGAACGCGACCAGAAGCTCAAG
TCCCGCCAACAGGACCAGGCCGAGCTGGCCAAGGTACTGCGGACCATCGAGGAAACCCTGGCCCGCCAGGCC
CGCGAAGCCGCCGCCGCGGCGGAGCGCGAGCGCCAGCGCGCGCTGGCCGCCGAACGCGAGCGTGCGCGCCAG
CAGCAGGCCGCCCCCGGACGAGTCACCAGCCCGCCGCGCGAACCTGCGCCGGGCCCGCTGGTCTCAAGCACT
GGCGCGGTCTACGGCGGCGCGTTCGGCTCGGCCCGCGGCAAGCTGCCGTGGCCGGTGAATGGCCGCGTCGTG
GCGCGCTTCGGCAGCCAGCGCGGCGACGATCCGCGGGCGAAATGGGACGGCGTACTGATTTCGGCGAGCGCC
GGCAGCACCGTCCGCGCGGTGCACGGCGGACGCGTGGTATTCGCCGACTGGTTGCGCGGAGCCGGCCTGTTG
GTCATCCTCGACCACGGTGGCGGCTACCTCAGCCTTTATGGCCATAATCAAAGCCTGCTGAAAGACGCCGGC
GACACCGTGAAGGCCGGCGACCCGATCGCCACCGTTGGAACCAGCGGCGGCCAGAGTAGCCCGGCCGTGTAC
TTCGCCATTCGCCATCAGGGCCGCCCGGCGGACCCTACTACCTGGTGCCGCGCGCAGGGATAG