ViewGene

Locus Name:
GeneID:
Location:

GeneID:1333
TrivialName: PA14_64880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64880
PAO1 Ortholog Locus:PA4911
Sequence Length:1278
Protein Length:425
Start: 5782196
Stop: 5780919
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08296.1|AE004904_4 (AE004904) probable permease of ABC branched-chain amino acid transporter [Pseudomonas aeruginosa PAO1]
Identities = 425/425 (100%), Positives = 425/425 (100%)
Sequence:
ATGAGCAACGAGACTTCCATCGATCTCAAGCAGTGCGTCCTCGATGCCGTGCTCTCCGGGTTGATCGCCCTG
GTGGTGTTCGGCCCCATCGTCGGCGTGGTCCTCGACGGCTACGGCTTCAACCTGCATTACGAGCGGGTCGGC
TGGATCATCGCGATCGTGATGGCCGGGCGCTTCCTGCTCAGCCTCTACCTGCAGACCCGCGGCGGGCGGGCC
GTGCTGGAGCGCTTCGAGGGGGCTGGCAGCGGCGTCCACGTCCTGCCGCCGGGTTACAAGACCCGCTTGCGC
TGGATCGTGCCGCTGATCCTGGTGGCCGCGGTGATCTTCCCCTTCTTCGCCAGCAAGTACCTGCTGGCGGTG
GTCATCCTCGGCCTGATCTACGTGCTGCTGGGCCTGGGCCTGAACATCGTGGTCGGCCTCGCCGGGCTGCTT
GACCTCGGCTACGTGGCCTTCTACGCCATTGGTGCCTATGGCCTGGCGCTGGGCTACCAGTACCTCGGCCTG
GGCTTCTGGACCGTCCTGCCGCTGGCCGCGCTGACCGCCGCGGTGGCCGGGGCGATCCTCGGCTTCCCGGTG
TTGCGCATGCATGGCGACTACCTGGCGATCGTCACCCTGGGCTTCGGCGAGATCATCCGCCTGGTACTGAAC
AACTGGCTGTCCTTCACCGGCGGGCCGAACGGCATGCCGGCGCCGGCGCCGACCTTCCTTGGCCTGGAGTTC
GGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCCTCGGCATCGCCTACAACCCCAACATGAAG
TTCCTGTTCATCTACGTGGTGCTGTTCCTGGTCGTGCTGCTGGTGCTCTACATCAAGCACCGGCTGACCCGG
ATGCCGGTCGGGCGCGCCTGGGAGGCGCTGCGCGAGGACGAGATCGCCTGTCGCGCGATGGGCCTAAACCAT
GTGCTGGTGAAACTCTCGGCGTTCATGCTCGGCGCCTCCACCGCGGGACTGGCCGGGGTGTTCTTCGCCAGC
TACCAGGGCTTCGTCAACCCGTCCTCGTTCAACTTCTTCGAGTCGGCGCTGATCCTCGCCATCGTCGTGCTC
GGCGGCATGGGCTCGACGGTCGGGGTGGTGATCGCCGCCTTCGTCCTCACCGTGGCGCCGGAGCTGCTGCGC
AGCTTCGCCGACATCCGCGTGCTGCTGCTCGGGATACTCATGGTGGTGATGATGATCTGGCGGCCGCGCGGG
CTGATCCGCATCAGCCGGGTGGGCTTCGCCCCGCGCAAGGGGGTGGCGCCATGA
Translation:
MSNETSIDLKQCVLDAVLSGLIALVVFGPIVGVVLDGYGFNLHYERVGWIIAIVMAGRFLLSLYLQTRGGRA
VLERFEGAGSGVHVLPPGYKTRLRWIVPLILVAAVIFPFFASKYLLAVVILGLIYVLLGLGLNIVVGLAGLL
DLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAALTAAVAGAILGFPVLRMHGDYLAIVTLGFGEIIRLVLN
NWLSFTGGPNGMPAPAPTFLGLEFGRRAKDGGVPIHEFLGIAYNPNMKFLFIYVVLFLVVLLVLYIKHRLTR
MPVGRAWEALREDEIACRAMGLNHVLVKLSAFMLGASTAGLAGVFFASYQGFVNPSSFNFFESALILAIVVL
GGMGSTVGVVIAAFVLTVAPELLRSFADIRVLLLGILMVVMMIWRPRGLIRISRVGFAPRKGVAP*
AnnotationID:1342GeneID:1333
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:27
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC branched-chain amino acid transporter
Cell Localization:()
Synonyms:braE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4177
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70434.1|AE016684_13 (AE016792) branched-chain amino acid ABC transporter, permease
           protein [Pseudomonas putida KT2440]
          Length = 435

 Score =  689 bits (1779), Expect = 0.0
 Identities = 341/425 (80%), Positives = 379/425 (89%)

>gb|AAO58345.1| (AE016873) high-affinity branched-chain amino acid ABC transporter,
           permease protein BraE [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 437

 Score =  682 bits (1759), Expect = 0.0
 Identities = 331/416 (79%), Positives = 377/416 (90%)

Structural Features:
COG4177, LivM, ABC-type branched-chain amino acid transport system, 
permease component 
[Amino acid transport and metabolism]
CD-Length = 314 residues,  94.3% aligned
Score =  191 bits (488), Expect = 9e-50
Identities = 131/318 (41%), Positives = 184/318 (57%), Gaps = 28/318 (8%)
Genomic Context:
Comment:
other possible gene name: livM
ReferenceID:2669
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19813
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35148
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1333_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1333

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2438 PA4911_tr translation of PA4911 425 99.99 99.99 0 2148.0
77600 gb|AAG08296.1|AE004904_4 (AE004904) probable permease of ABC branched-chain amino acid transporter [Pseudomonas aeruginosa PAO1] 425 99.99 99.99 0 2148.0
77601 gb|AAN70434.1|AE016684_13 (AE016792) branched-chain amino acid ABC transporter, permease protein [Pseudomonas putida KT2440] 435 78.39 87.12 10 1779.0
77602 gb|AAO58345.1| (AE016873) high-affinity branched-chain amino acid ABC transporter, permease protein BraE [Pseudomonas syringae pv. tomato str. DC3000] 437 76.20 86.95 12 1749.0
77604 dbj|BAA14256.1| (D90223) integral membrane protein [Pseudomonas aeruginosa] 435 51.03 66.20 28 1058.0
GC ORFID: 44335How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4911Glimmer Score:
Start: 5045877Stop: 5044600
Length: 1278
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4911 translation of PA4911Homolog Bit Score 832.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7644 (ORF: BLASTX 683.0), t_PA1072 (ORF: BLASTX 406.0), psyr_15may02_Scaffold5_revised_gene6075 (ORF: BLASTX 388.0), t_PA4911 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCAACGAGACTTCCATCGATCTCAAGCAGTGCGTCCTCGATGCCGTGCTCTCCGGGTTGATCGCCCTG
GTGGTGTTCGGCCCCATCGTCGGCGTGGTCCTCGACGGCTACGGCTTCAACCTGCATTACGAGCGGGTCGGC
TGGATCATCGCGATCGTGATGGCCGGGCGCTTCCTGCTCAGCCTCTACCTGCAGACCCGCGGCGGGCGGGCC
GTGCTGGAGCGCTTCGAGGGGGCTGGCAGCGGCGTCCACGTCCTGCCGCCGGGTTACAAGACCCGCTTGCGC
TGGATCGTGCCGCTGATCCTGGTGGCCGCGGTGATCTTCCCCTTCTTCGCCAGCAAGTACCTGCTGGCGGTG
GTCATCCTCGGCCTGATCTACGTGCTGCTGGGCCTGGGCCTGAACATCGTGGTCGGCCTCGCCGGGCTGCTT
GACCTCGGCTACGTGGCCTTCTACGCCATTGGTGCCTATGGCCTGGCGCTGGGCTACCAGTACCTCGGCCTG
GGCTTCTGGACCGTCCTGCCGCTGGCCGCGCTGACCGCCGCGGTGGCCGGGGCGATCCTCGGCTTCCCGGTG
TTGCGCATGCATGGCGACTACCTGGCGATCGTCACCCTGGGCTTCGGCGAGATCATCCGCCTGGTACTGAAC
AACTGGCTGTCCTTCACCGGCGGGCCGAACGGCATGCCGGCGCCGGCGCCGACCTTCCTTGGCCTGGAGTTC
GGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCCTCGGCATCGCCTACAACCCCAACATGAAG
TTCCTGTTCATCTACGTGGTGCTGTTCCTGGTCGTGCTGCTGGTGCTCTACATCAAGCACCGGCTGACCCGG
ATGCCGGTCGGGCGCGCCTGGGAGGCGCTGCGCGAGGACGAGATCGCCTGTCGCGCGATGGGCCTAAACCAT
GTGCTGGTGAAACTCTCGGCGTTCATGCTCGGCGCCTCCACCGCGGGACTGGCCGGGGTGTTCTTCGCCAGC
TACCAGGGCTTCGTCAACCCGTCCTCGTTCAACTTCTTCGAGTCGGCGCTGATCCTCGCCATCGTCGTGCTC
GGCGGCATGGGCTCGACGGTCGGGGTGGTGATCGCCGCCTTCGTCCTCACCGTGGCGCCGGAGCTGCTGCGC
AGCTTCGCCGACATCCGCGTGCTGCTGCTCGGGATACTCATGGTGGTGATGATGATCTGGCGGCCGCGCGGG
CTGATCCGCATCAGCCGGGTGGGCTTCGCCCCGCGCAAGGGGGTGGCGCCATGA