ViewGene
Locus Name:
GeneID:
Location:

GeneID:1332
TrivialName: PA14_61480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61480
PAO1 Ortholog Locus:PA4647
Sequence Length:1284
Protein Length:427
Start: 5485428
Stop: 5486711
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08034.1|AE004878_12 (AE004878) uracil permease [Pseudomonas aeruginosa PAO1]
Identities = 427/427 (100%), Positives = 427/427 (100%)
Sequence:
ATGGGCGATGCCTTCCAGGAGCCGCTCTGGCGCCAGGTGCTGTCAGGCGCGCAGATGCTGTTCGTCGCCTTC
GGCGCGCTGGTGCTGATGCCGCTGATCACCGGTCTGGATCCCAACGTCGCGCTGTTCACCGCCGGCCTCGGG
ACCCTGCTGTTCCAATTGGTGACCGGGCGCCAGGTACCGGTGTTCCTCGCCTCCAGCTTCGCCTTCATCACC
CCGATCATCCTCGCCAAGGGCCAGTTCGGCCTGGCCGCGACCATGGGCGGGGTGGTCGCCGCCGGCTTCGTC
TACACCTTCATGGGCCTGGCGGTGAAGATCAAGGGCACCGGCTTCATCGATAAACTGCTGCCGCCGGTGGTG
ATCGGCCCGGTGATCATCTCGATCGGCCTGGCGATGGCGCCGATCGCGGCGAACATGGCGATGGGCAAGGCC
GGCGACGGCAGCGAGCTGCTGCCGTACCGCACCGCGATGATGATCTCGATGCCGGCGCTGCTCACCACCCTG
GTGGTGGCGGTATTCGGCAAGGGTATCTTCCGCCTGGTGCCGATCATCGCCGGCGTGCTGGTCGGCTTCGCC
CTGTCGTTCGTCTTCGGCGTGGTCGACACCGCCGCGATCGTCGCCGCACCCTGGCTGGAGCTGCCGAAATTC
ACCGCGCCGGAATTCAACTGGCAGGCGATCCTGTTCATCGTCCCGGTGGCCCTGGCCCCGGCCATCGAGCAT
ATCGGCGGGGTCATCGCGGTGGGCGGCGTCACCGGCCAGGACTACCTGAAGAAGCCCGGCCTGCACCGCACC
CTCCTTGGCGACGGCCTGGCCACCTCGGCCGCCGGCCTGTTCGGCGGACCGCCCAACACCACCTACGCGGAA
GTCACCGGCGCAGTGATGCTGACCAAGAACTACAACCCGAAGATCATGACCTGGGCGGCGGTGATCGCCATC
ACCCTGGCCTTCGTCGGCAAGTTCGGCGCGATCCTGCAAAGCATCCCGGTACCGGTGATGGGCGGCATCCTC
TGCCTGCTGTTCGGCACCATCGCCTCGGTCGGCATGAACACCCTGATCCGGCACAAGGTCGATCTCTCGGAA
GCGCGCAACCTGGTGATCGTCTCGGTGACGCTGGTGTTCGGCATCGGCGGCGTGCTGATCGGCAGCGGTACC
GGTCCCGACGACATCGGCCTGAAGGGCATCGCCCTGTGCGCCATCGTCGCCATCGTCCTCAACCTGTTGCTG
CCGGGCAATGACGGCTGGCAGAACAAGGCGCTCGACGAACAGCACAAGGATTCGCACTGA
Translation:
MGDAFQEPLWRQVLSGAQMLFVAFGALVLMPLITGLDPNVALFTAGLGTLLFQLVTGRQVPVFLASSFAFIT
PIILAKGQFGLAATMGGVVAAGFVYTFMGLAVKIKGTGFIDKLLPPVVIGPVIISIGLAMAPIAANMAMGKA
GDGSELLPYRTAMMISMPALLTTLVVAVFGKGIFRLVPIIAGVLVGFALSFVFGVVDTAAIVAAPWLELPKF
TAPEFNWQAILFIVPVALAPAIEHIGGVIAVGGVTGQDYLKKPGLHRTLLGDGLATSAAGLFGGPPNTTYAE
VTGAVMLTKNYNPKIMTWAAVIAITLAFVGKFGAILQSIPVPVMGGILCLLFGTIASVGMNTLIRHKVDLSE
ARNLVIVSVTLVFGIGGVLIGSGTGPDDIGLKGIALCAIVAIVLNLLLPGNDGWQNKALDEQHKDSH*
AnnotationID:1341GeneID:1332
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 20:08:40
Gene Name:uraA
Confidence Code:2
GeneProduct:Uracil permease
Cell Localization:(4) Inner membrane protein
Synonyms:PA4647
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2667




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19811




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1332
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2437
                           PA4647_tr
                           translation of PA4647
                           427
                           99.99
                           99.99
                           0
                           2150.0
     

     
     
77560
                           gb|AAG08034.1|AE004878_12
                           (AE004878) uracil permease [Pseudomonas aeruginosa PAO1]
                           427
                           99.99
                           99.99
                           0
                           2150.0
     

     
     
77561
                           gb|AAN66370.1|AE016265_4
                           (AE016776) uracil transporter [Pseudomonas putida KT2440]
                           427
                           88.05
                           93.67
                           6
                           1940.0
     

     
     
77562
                           gb|AAO54658.1|
                           (AE016859) uracil transporter [Pseudomonas syringae pv. tomato str. DC3000]
                           427
                           82.43
                           89.46
                           21
                           1814.0
     

     
     
77563
                           gb|AAN55895.1|AE015726_3
                           (AE015726) uracil permease [Shewanella oneidensis MR-1]
                           434
                           61.52
                           78.11
                           29
                           1399.0
     

     






      

          
GC ORFID: 44334How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4647Glimmer Score: 

          
Start: 4749108Stop: 4750391

          
Length: 1284


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4647 translation of PA4647Homolog Bit Score 832.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5077 (ORF: BLASTX 736.0), t_PA4647 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGATGCCTTCCAGGAGCCGCTCTGGCGCCAGGTGCTGTCAGGCGCGCAGATGCTGTTCGTCGCCTTC 
GGCGCGCTGGTGCTGATGCCGCTGATCACCGGTCTGGATCCCAACGTCGCGCTGTTCACCGCCGGCCTCGGG 
ACCCTGCTGTTCCAATTGGTGACCGGGCGCCAGGTACCGGTGTTCCTCGCCTCCAGCTTCGCCTTCATCACC 
CCGATCATCCTCGCCAAGGGCCAGTTCGGCCTGGCCGCGACCATGGGCGGGGTGGTCGCCGCCGGCTTCGTC 
TACACCTTCATGGGCCTGGCGGTGAAGATCAAGGGCACCGGCTTCATCGATAAACTGCTGCCGCCGGTGGTG 
ATCGGCCCGGTGATCATCTCGATCGGCCTGGCGATGGCGCCGATCGCGGCGAACATGGCGATGGGCAAGGCC 
GGCGACGGCAGCGAGCTGCTGCCGTACCGCACCGCGATGATGATCTCGATGCCGGCGCTGCTCACCACCCTG 
GTGGTGGCGGTATTCGGCAAGGGTATCTTCCGCCTGGTGCCGATCATCGCCGGCGTGCTGGTCGGCTTCGCC 
CTGTCGTTCGTCTTCGGCGTGGTCGACACCGCCGCGATCGTCGCCGCACCCTGGCTGGAGCTGCCGAAATTC 
ACCGCGCCGGAATTCAACTGGCAGGCGATCCTGTTCATCGTCCCGGTGGCCCTGGCCCCGGCCATCGAGCAT 
ATCGGCGGGGTCATCGCGGTGGGCGGCGTCACCGGCCAGGACTACCTGAAGAAGCCCGGCCTGCACCGCACC 
CTCCTTGGCGACGGCCTGGCCACCTCGGCCGCCGGCCTGTTCGGCGGACCGCCCAACACCACCTACGCGGAA 
GTCACCGGCGCAGTGATGCTGACCAAGAACTACAACCCGAAGATCATGACCTGGGCGGCGGTGATCGCCATC 
ACCCTGGCCTTCGTCGGCAAGTTCGGCGCGATCCTGCAAAGCATCCCGGTACCGGTGATGGGCGGCATCCTC 
TGCCTGCTGTTCGGCACCATCGCCTCGGTCGGCATGAACACCCTGATCCGGCACAAGGTCGATCTCTCGGAA 
GCGCGCAACCTGGTGATCGTCTCGGTGACGCTGGTGTTCGGCATCGGCGGCGTGCTGATCGGCAGCGGTACC 
GGTCCCGACGACATCGGCCTGAAGGGCATCGCCCTGTGCGCCATCGTCGCCATCGTCCTCAACCTGTTGCTG 
CCGGGCAATGACGGCTGGCAGAACAAGGCGCTCGACGAACAGCACAAGGATTCGCACTGA