ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1331

TrivialName: PA14_32290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_32290

PAO1 Ortholog Locus: PA2503

Sequence Length: 1254

Protein Length: 417

Start: 2806899

Stop: 2805646

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05891.1|AE004677_8 (AE004677) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 413/417 (99%), Positives = 417/417 (100%)

Sequence:

ATGGAACTCTCCCCCGCCGAACGCCAACTCCTGCTGGCCCATCGCCTGGCCGTGTTCGACGGCTGCGTGGTA
TACGACGCCCAACCGCCGGTGTCCGCCGAACACGTCCAGCGTCTTGCCGAAGGCCTGGCCGGACCGATTCCA
GAAGACCTGCTACGCCTCTGGCGCACCTGTTTCGGCGGGCGCCTCGGCTATGACCTGGAAGTCGACTACGAC
GGCCACCGCCACCCGTTCTCTTTCAGCGAACTGTTCTATCCGGACAGCGACGGCTACCACGACCTCTGGGGC
TGGATCGAACACGAGCGCGAGCTGGCGGCGGAAGCCGCGGCAGAAGAAGGCCGCGACTGGAACGGCAAGCTG
GCCTACCTGCCGTTCGGTGGCTTCGAGTACCTGGAGCGGCTCTACGTCTGCGTCGAACCCGGCCCCGAGTAT
GGCGCGGTAATCGCCTGGAGCCACGGCCTGCCGCCGGCCTGGGCCGGACGCCTGCACCAGGATTCGCTGACG
CGCCTGGCCGACGACGTCGGCGGGCTGTTCCGCCTGCTGTCCTTCGAACAGGACCCGTTCGACGCCGAGAAC
GCCTGCGGCGTGGCCGACGAGCTGCTGGAAGCGCTGGACGCCCTGGAGGCCGCCGGGGAGCCCGGCAAGGCG
CTGAAGGGCCGCCTGGAAGTCCTGCTGCGCCAGCGCATCCTCGACTGGCGGCCGGCCCTCGCCGACGGCAGC
CTGGCCGCCGAGCCAAGGCTGCGTCAACTGGCCCTGGCCGAAGCTGCGCAAGACGGCGACATCGACCTGCTG
CAACGCCTGCGCGATGCCGGCTGCGACTTCGCCGAAACCTTGCGCGGACGCGGCGGCGTGCTGGAGGCCTGC
CTCGCCCGCGGGCGCCTGGAGGCCGCCAGATGGCTGCTCGACCAGGGCGTCGCGGTGCACCAGGACAGCCTG
CAGATTGGCGCCGCGCACCTCGATGCGCTCCTGGCCGAACGCCTGTTGCGGCTCGGCGCGATCTCCGACCCG
AATACGGTGCTCCTCGCCCTGCAATACGGCGACGCCGACGCCGCGCGGATCATGGCACGACCGCTGCTGGAG
GAGTCGCCGGCGCGGGCCAGCGCCCTGCGCCTGGCCCTCGCCAGCCGCGCCGAGCGCGAGCGCAGCGACGCC
AGGCGGGTCAGGTCGGGAAAGATGGGCAGCAACCGCAGTCCCGACGACTACCTGGCCCTGGCCGAGCGCCTG
GAGCGCTTCCTCGCCGAGCTGCCTGGCTGA

Translation:

MELSPAERQLLLAHRLAVFDGCVVYDAQPPVSAEHVQRLAEGLAGPIPEDLLRLWRTCFGGRLGYDLEVDYD
GHRHPFSFSELFYPDSDGYHDLWGWIEHERELAAEAAAEEGRDWNGKLAYLPFGGFEYLERLYVCVEPGPEY
GAVIAWSHGLPPAWAGRLHQDSLTRLADDVGGLFRLLSFEQDPFDAENACGVADELLEALDALEAAGEPGKA
LKGRLEVLLRQRILDWRPALADGSLAAEPRLRQLALAEAAQDGDIDLLQRLRDAGCDFAETLRGRGGVLEAC
LARGRLEAARWLLDQGVAVHQDSLQIGAAHLDALLAERLLRLGAISDPNTVLLALQYGDADAARIMARPLLE
ESPARASALRLALASRAERERSDARRVRSGKMGSNRSPDDYLALAERLERFLAELPG*

AnnotationID:1340 GeneID:1331

AnnotatorUID: diggins

Modification Date/Time: 2005-03-06 16:04:44

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2503

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2665

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19809

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33053

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1331_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1331

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2436 PA2503_tr translation of PA2503 417 99.04 99.99 0 2150.0

77559 gb|AAG05891.1|AE004677_8 (AE004677) hypothetical protein PA2503 [Pseudomonas aeruginosa PAO1] 417 99.04 99.99 0 2150.0

GC ORFID: `44333`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2503`	Glimmer Score:
Start: `2147025`	Stop: `2148278`
Length: `1254`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2503 translation of PA2503`	Homolog Bit Score `832.0`
Other Homologs: `t_PA2503 (ORF: GLIMMER)`
GC ORF Sequence
ATGGAACTCTCCCCCGCCGAACGCCAACTCCTGCTGGCCCATCGCCTGGCCGTGTTCGACGGCTGCGTGGTA TACGACGCCCAACCGCCGGTGTCCGCCGAACACGTCCAGCGTCTTGCCGAAGGCCTGGCCGGACCGATTCCA GAAGACCTGCTACGCCTCTGGCGCACCTGTTTCGGCGGGCGCCTCGGCTATGACCTGGAAGTCGACTACGAC GGCCACCGCCACCCGTTCTCTTTCAGCGAACTGTTCTATCCGGACAGCGACGGCTACCACGACCTCTGGGGC TGGATCGAACACGAGCGCGAGCTGGCGGCGGAAGCCGCGGCAGAAGAAGGCCGCGACTGGAACGGCAAGCTG GCCTACCTGCCGTTCGGTGGCTTCGAGTACCTGGAGCGGCTCTACGTCTGCGTCGAACCCGGCCCCGAGTAT GGCGCGGTAATCGCCTGGAGCCACGGCCTGCCGCCGGCCTGGGCCGGACGCCTGCACCAGGATTCGCTGACG CGCCTGGCCGACGACGTCGGCGGGCTGTTCCGCCTGCTGTCCTTCGAACAGGACCCGTTCGACGCCGAGAAC GCCTGCGGCGTGGCCGACGAGCTGCTGGAAGCGCTGGACGCCCTGGAGGCCGCCGGGGAGCCCGGCAAGGCG CTGAAGGGCCGCCTGGAAGTCCTGCTGCGCCAGCGCATCCTCGACTGGCGGCCGGCCCTCGCCGACGGCAGC CTGGCCGCCGAGCCAAGGCTGCGTCAACTGGCCCTGGCCGAAGCTGCGCAAGACGGCGACATCGACCTGCTG CAACGCCTGCGCGATGCCGGCTGCGACTTCGCCGAAACCTTGCGCGGACGCGGCGGCGTGCTGGAGGCCTGC CTCGCCCGCGGGCGCCTGGAGGCCGCCAGATGGCTGCTCGACCAGGGCGTCGCGGTGCACCAGGACAGCCTG CAGATTGGCGCCGCGCACCTCGATGCGCTCCTGGCCGAACGCCTGTTGCGGCTCGGCGCGATCTCCGACCCG AATACGGTGCTCCTCGCCCTGCAATACGGCGACGCCGACGCCGCGCGGATCATGGCACGACCGCTGCTGGAG GAGTCGCCGGCGCGGGCCAGCGCCCTGCGCCTGGCCCTCGCCAGCCGCGCCGAGCGCGAGCGCAGCGACGCC AGGCGGGTCAGGTCGGGAAAGATGGGCAGCAACCGCAGTCCCGACGACTACCTGGCCCTGGCCGAGCGCCTG GAGCGCTTCCTCGCCGAGCTGCCTGGCTGA