ViewGene
Locus Name:
GeneID:
Location:

GeneID:1329
TrivialName: PA14_46990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46990
PAO1 Ortholog Locus:PA1335
Sequence Length:1278
Protein Length:425
Start: 4186144
Stop: 4187421
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04724.1|AE004563_1 (AE004563) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 425/425 (100%), Positives = 425/425 (100%)
Sequence:
TTGCTCGGCTGCCAGCAGGCGCTGGAGCTGGAGGACATCCCCTGCATCGGCGTCGGCAGCGCCGAGGAGGCG
CTGCAACGGGTCGACCGCGACTTCGCCGGCATCGTCGTCAGCGACATCCGCCTGCCCGGCATCGACGGCCTG
ACCCTGCTGGAGCGTCTCAAGGCCCTCGACCCGAGCCTGCCGGTGGTGCTGATCACCGGTCACGGCGACATC
TCCATGGCGGTACAGGCGATGCACGCCGGCGCCTACGACTTCATGGAGAAGCCCTTCTCTCCGGAACGCCTG
GTCGAGGTCGCCCGCCGCGCCCTGGAGCAGCGCGGGCTGGCCCGCGAGGTCAGCGCGCTGCGTCGCCAGTTG
GCCGGCCGCCAGGACCTGGCGCAACGGATCATCGGCCGCTCGCCGGCGATCCAGGCGTTGCGCGAGCTGATC
GCCAACGTCGGCGACACCTCGGCCAACGTGCTGATCCTCGGCGAGACCGGCACCGGCAAGGAGCTGGTGGCG
CGCTGCCTCCACGACTACAGCCGGCGCCACCAGCATGCCTTCGTCGCGCTGAACTGCGGCGGCCTGCCGGAG
AACCTGTTCGACAGCGAGATATTCGGCCACGAGGCGCACGCCTTCACCGGTGCCAACAAGCGGCGGATCGGC
AAGATCGAGCATGCCAACGGCGGCACGCTGTTCCTCGACGAGATCGAGAGCATGCCGGTCAACCTGCAGATC
AAGCTGCTGCGGGTGTTGCAGGAACACACCCTGGAACGCCTCGGCTCGAACCAGTCGATCCCGGTGGACTGC
CGGGTGATCGCGGCGACCAAGGCGGACCTCGCCGCCATGGGCAAGAGCGGCCAGTTCCGCAGCGACCTCTAC
TACCGGCTCAACGTGGTGAGCCTGGAACTGCCGGCACTGCGCGACCGCCGCGAGGACATCCTGCTGCTCTTC
GAACACTTCCTTCAGCAATCCTCGCTGCGCTTCGACCGCCCCGCGCCGGAACTCGACCGTGCCACCGTGGCC
AGCCTGATGGCCCACGACTGGCCGGGCAACGTGCGCGAACTGCGCAACGTCGCCGAACGCTTCGCCCTCGGC
CTGCCGGTGTTCAACAAGGGCGGCCAGGCCGTACAGACCGGCGGCCCGCGCTTCGCCGAAGCGGTGGAGGCA
TTCGAGAAGGCCCTGCTCGGCGACGCCCTGGCCCGCCACCACGGCAACCTGACCCAGGCCAGCCAGGACCTG
GGCATGGCCAAGACCACGCTGTTCGACAAGGTGAAGAAGTACGGCCTGCAATAG
Translation:
MLGCQQALELEDIPCIGVGSAEEALQRVDRDFAGIVVSDIRLPGIDGLTLLERLKALDPSLPVVLITGHGDI
SMAVQAMHAGAYDFMEKPFSPERLVEVARRALEQRGLAREVSALRRQLAGRQDLAQRIIGRSPAIQALRELI
ANVGDTSANVLILGETGTGKELVARCLHDYSRRHQHAFVALNCGGLPENLFDSEIFGHEAHAFTGANKRRIG
KIEHANGGTLFLDEIESMPVNLQIKLLRVLQEHTLERLGSNQSIPVDCRVIAATKADLAAMGKSGQFRSDLY
YRLNVVSLELPALRDRREDILLLFEHFLQQSSLRFDRPAPELDRATVASLMAHDWPGNVRELRNVAERFALG
LPVFNKGGQAVQTGGPRFAEAVEAFEKALLGDALARHHGNLTQASQDLGMAKTTLFDKVKKYGLQ*
AnnotationID:1338GeneID:1329
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 07:07:46
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA1335
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative sigma-54 dependent transcriptional/regulator/response regulator
Functional Category Confidence Code:5
COGs:COG2204,pfam00158
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66691.1|AE016297_5 (AE016778) sigma-54 dependent response regulator [Pseudomonas
           putida KT2440]
          Length = 442

 Score =  669 bits (1727), Expect = 0.0
 Identities = 346/424 (81%), Positives = 371/424 (87%)

>gb|AAO57632.1| (AE016871) sigma-54 dependent transcriptional regulator/response
           regulator [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 442

 Score =  639 bits (1648), Expect = 0.0
 Identities = 331/424 (78%), Positives = 364/424 (85%)

>emb|CAD13860.1| (AL646058) PROBABLE C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR
           TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 438

 Score =  458 bits (1178), Expect = e-128
 Identities = 240/419 (57%), Positives = 302/419 (72%), Gaps = 2/419 (0%)






 
Structural Features:
COG2204, AtoC, Response regulator containing CheY-like receiver, 
AAA-type ATPase, and DNA-binding domains 
[Signal transduction mechanisms]
CD-Length = 464 residues,  94.2% aligned
Score =  504 bits (1298), Expect = 9e-144
Identities = 217/440 (49%), Positives = 285/440 (64%), Gaps = 22/440 (5%)

pfam00158, Sigma54_activat, Sigma-54 interaction domain.
CD-Length = 222 residues, 100.0% aligned
Score =  297 bits (761), Expect = 2e-81
Identities = 127/222 (57%), Positives = 156/222 (70%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14329




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19804




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37470




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1329_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1329
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2423
                           PA1335_tr
                           translation of PA1335
                           425
                           99.99
                           99.99
                           0
                           2149.0
     

     
     
77139
                           gb|AAG04724.1|AE004563_1
                           (AE004563) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           425
                           99.76
                           99.99
                           0
                           2147.0
     

     
     
77140
                           gb|AAN66691.1|AE016297_5
                           (AE016778) sigma-54 dependent response regulator [Pseudomonas putida KT2440]
                           442
                           78.50
                           83.93
                           17
                           1728.0
     

     
     
77141
                           gb|AAO57632.1|
                           (AE016871) sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           443
                           74.94
                           82.16
                           19
                           1650.0
     

     
     
77142
                           emb|CAD13860.1|
                           (AL646058) PROBABLE C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           444
                           54.50
                           68.69
                           25
                           1179.0
     

     






      

          
GC ORFID: 44331How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1335Glimmer Score: 

          
Start: 767765Stop: 766488

          
Length: 1278


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1335 translation of PA1335Homolog Bit Score 832.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6135 (ORF: BLASTX 677.0), psyr_15may02_Scaffold14_revised_gene2286 (ORF: BLASTX 445.0), t_PA5166 (ORF: BLASTX 441.0), t_PA5511 (ORF: BLASTX 436.0), t_PA1945 (ORF: BLASTX 251.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 238.0), t_PA2354 (ORF: BLASTX 226.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 226.0), psyr_15may02_Scaffold3_revised_gene4961 (ORF: BLASTX 217.0), psyr_15may02_Scaffold2_revised_gene3237 (ORF: BLASTX 174.0), t_PA3932 (ORF: BLASTX 162.0), t_PA1335 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCTCGGCTGCCAGCAGGCGCTGGAGCTGGAGGACATCCCCTGCATCGGCGTCGGCAGCGCCGAGGAGGCG 
CTGCAACGGGTCGACCGCGACTTCGCCGGCATCGTCGTCAGCGACATCCGCCTGCCCGGCATCGACGGCCTG 
ACCCTGCTGGAGCGTCTCAAGGCCCTCGACCCGAGCCTGCCGGTGGTGCTGATCACCGGTCACGGCGACATC 
TCCATGGCGGTACAGGCGATGCACGCCGGCGCCTACGACTTCATGGAGAAGCCCTTCTCTCCGGAACGCCTG 
GTCGAGGTCGCCCGCCGCGCCCTGGAGCAGCGCGGGCTGGCCCGCGAGGTCAGCGCGCTGCGTCGCCAGTTG 
GCCGGCCGCCAGGACCTGGCGCAACGGATCATCGGCCGCTCGCCGGCGATCCAGGCGTTGCGCGAGCTGATC 
GCCAACGTCGGCGACACCTCGGCCAACGTGCTGATCCTCGGCGAGACCGGCACCGGCAAGGAGCTGGTGGCG 
CGCTGCCTCCACGACTACAGCCGGCGCCACCAGCATGCCTTCGTCGCGCTGAACTGCGGCGGCCTGCCGGAG 
AACCTGTTCGACAGCGAGATATTCGGCCACGAGGCGCACGCCTTCACCGGTGCCAACAAGCGGCGGATCGGC 
AAGATCGAGCATGCCAACGGCGGCACGCTGTTCCTCGACGAGATCGAGAGCATGCCGGTCAACCTGCAGATC 
AAGCTGCTGCGGGTGTTGCAGGAACACACCCTGGAACGCCTCGGCTCGAACCAGTCGATCCCGGTGGACTGC 
CGGGTGATCGCGGCGACCAAGGCGGACCTCGCCGCCATGGGCAAGAGCGGCCAGTTCCGCAGCGACCTCTAC 
TACCGGCTCAACGTGGTGAGCCTGGAACTGCCGGCACTGCGCGACCGCCGCGAGGACATCCTGCTGCTCTTC 
GAACACTTCCTTCAGCAATCCTCGCTGCGCTTCGACCGCCCCGCGCCGGAACTCGACCGTGCCACCGTGGCC 
AGCCTGATGGCCCACGACTGGCCGGGCAACGTGCGCGAACTGCGCAACGTCGCCGAACGCTTCGCCCTCGGC 
CTGCCGGTGTTCAACAAGGGCGGCCAGGCCGTACAGACCGGCGGCCCGCGCTTCGCCGAAGCGGTGGAGGCA 
TTCGAGAAGGCCCTGCTCGGCGACGCCCTGGCCCGCCACCACGGCAACCTGACCCAGGCCAGCCAGGACCTG 
GGCATGGCCAAGACCACGCTGTTCGACAAGGTGAAGAAGTACGGCCTGCAATAG