ViewGene
Locus Name:
GeneID:
Location:

GeneID:1328
TrivialName: PA14_56940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56940
PAO1 Ortholog Locus:PA4380
Sequence Length:1281
Protein Length:426
Start: 5075703
Stop: 5074423
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07768.1|AE004854_4 (AE004854) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 426/426 (100%), Positives = 426/426 (100%)
Sequence:
ATGGAGTATAAGCAGAGCCTCGCCCGCCGGATCGTCATCGCCTTCATGTTGATGACGGTCGCTGTGGGAGGA
CTGTTCTCCGCCGGCATCGTCGGCGTGGTCCACATCATCGAGGAGCGCCTGATTTCCCGCGACCTGGGCGGC
GAACTGGAGCGCATCCTGCGCGACGACCTGGCCCAGGGACGCAACCCGGTGCTCGATCCCGGCATGCGCTTC
TTCATCAGCGACGGCCAGGGCTCCTACGCCATGCCGCCGGCGCTGGACCAACTGGATGTCGGTTTCCACGAA
GTGTTCGAGGGCGACTTGTCGTTCCATGCGCTGGTGCGCGACATCGATGGTCGCCGCTTCGTCCTGCTGCAG
GACCAGAGCGATTTCGAAGCGCGCGAGCAGGTGCTCTACGCCTCGGTGCTGACCGGCTACGTGCTGAGCATC
GCCCTGGCCGGCCTGCTTGGCTGGATGCTCGCGCGCAAGGTGATGGAGCCGGTGGTGCGCCTGGCGCGCCAG
GTGCGGCATCGCGAACAGTTGCTCGGTCTGGCGCCGCCGTTGGCGCCGGACTACGCCAACGACGAGGTCGGC
GAGCTGGCCGCTTCCTTCGACGAGACCCTTGGCCGCCTGCGCGACGCGCTCAAGCGCGAGCAATTGTTCACC
AGCGACGTCAGTCATGAGTTGCGTACGCCGTTGATGGTCATCGCCACCTCGTGCGAACTGCTGGCCGAAGAA
CCCAGCCTCGGCCCGCGCGCCCGTGGCCAACTGGAGCGGATGACCAAGGCCACCGAGGAGATGCGCGACCTG
GTGCAAACCTTCCTGTTGCTGGCGCGTGCGCAGAAGGGCGAGGAAAGCCTGGCGCCCCACGGTAGCCTGGAG
AGCATCGCCGACGACCTGGTCCAGGTCTGGCGCGAACAGGTCGAGGCGCGAGGACTGACCCTGCACTACCGC
AACGAAGGTGCCTGCGCCGGCCAGTTCAACGCGCCACTGCTGCGCGCGGTGATGGGCAACCTGTTACGCAAC
GCGACCCACTACACCGATGCCGGGAGCATCACGCTGACCCTCGACGAGCATGGTTTCAGCGTCGAGGACACC
GGGGCGGGCGTCCCGGAAGAACAACGCGAACGCATCTTCATGCCCTTCGTTCGCGGCAGTTCCAGCTCCGGG
CGCGGCGAAGGCCTTGGCCTCGGGCTCTCGCTGGTGAAGCGGATCTGCGCGGCCGAGGGCTGGAGCGTAACC
CTCAGCGCGGTGGAGCCGCACGGCTGCCGGTTCGAAGTTTTACTCGATGTTGCTTGA
Translation:
MEYKQSLARRIVIAFMLMTVAVGGLFSAGIVGVVHIIEERLISRDLGGELERILRDDLAQGRNPVLDPGMRF
FISDGQGSYAMPPALDQLDVGFHEVFEGDLSFHALVRDIDGRRFVLLQDQSDFEAREQVLYASVLTGYVLSI
ALAGLLGWMLARKVMEPVVRLARQVRHREQLLGLAPPLAPDYANDEVGELAASFDETLGRLRDALKREQLFT
SDVSHELRTPLMVIATSCELLAEEPSLGPRARGQLERMTKATEEMRDLVQTFLLLARAQKGEESLAPHGSLE
SIADDLVQVWREQVEARGLTLHYRNEGACAGQFNAPLLRAVMGNLLRNATHYTDAGSITLTLDEHGFSVEDT
GAGVPEEQRERIFMPFVRGSSSSGRGEGLGLGLSLVKRICAAEGWSVTLSAVEPHGCRFEVLLDVA*
AnnotationID:1337GeneID:1328
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 08:08:01
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:colS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,smart00387,pfam02518
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66527.1|AE016281_8 (AE016777) sensor histidine kinase [Pseudomonas putida KT2440]
          Length = 447

 Score =  523 bits (1348), Expect = e-148
 Identities = 263/422 (62%), Positives = 331/422 (78%), Gaps = 3/422 (0%)

>gb|AAO57823.1| (AE016871) sensor histidine kinase ColS [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 429

 Score =  503 bits (1296), Expect = e-142
 Identities = 254/427 (59%), Positives = 321/427 (75%), Gaps = 5/427 (1%)







 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  95.8% aligned
Score =  135 bits (340), Expect = 2e-32
Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 15/330 (4%)

smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues,  98.2% aligned
Score = 90.0 bits (223), Expect = 1e-18
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, 
and HSP90-like ATPase.
CD-Length = 111 residues,  99.1% aligned
Score = 81.2 bits (200), Expect = 4e-16
Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 5/110 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2659




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1328_cdd.html


    		




 
URL:

















    ReferenceID:19802




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1328
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2422
                           PA4380_tr
                           translation of PA4380
                           426
                           99.99
                           99.99
                           0
                           2151.0
     

     
     
77133
                           gb|AAG07768.1|AE004854_4
                           (AE004854) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           426
                           99.99
                           99.99
                           0
                           2151.0
     

     
     
77135
                           emb|CAA70932.1|
                           (Y09798) colS [Pseudomonas fluorescens]
                           427
                           60.88
                           76.34
                           3
                           1317.0
     

     
     
77137
                           gb|AAO57823.1|
                           (AE016871) sensor histidine kinase ColS [Pseudomonas syringae pv. tomato str. DC3000]
                           431
                           58.93
                           74.47
                           7
                           1301.0
     

     
     
77136
                           gb|AAK39632.1|
                           (AY032724) ColS [Pseudomonas putida]
                           442
                           58.59
                           74.88
                           22
                           1312.0
     

     






      

          
GC ORFID: 44330How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4380Glimmer Score: 

          
Start: 4339379Stop: 4338099

          
Length: 1281


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4380 translation of PA4380Homolog Bit Score 833.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2058 (ORF: BLASTX 501.0), t_PA4380 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGTATAAGCAGAGCCTCGCCCGCCGGATCGTCATCGCCTTCATGTTGATGACGGTCGCTGTGGGAGGA 
CTGTTCTCCGCCGGCATCGTCGGCGTGGTCCACATCATCGAGGAGCGCCTGATTTCCCGCGACCTGGGCGGC 
GAACTGGAGCGCATCCTGCGCGACGACCTGGCCCAGGGACGCAACCCGGTGCTCGATCCCGGCATGCGCTTC 
TTCATCAGCGACGGCCAGGGCTCCTACGCCATGCCGCCGGCGCTGGACCAACTGGATGTCGGTTTCCACGAA 
GTGTTCGAGGGCGACTTGTCGTTCCATGCGCTGGTGCGCGACATCGATGGTCGCCGCTTCGTCCTGCTGCAG 
GACCAGAGCGATTTCGAAGCGCGCGAGCAGGTGCTCTACGCCTCGGTGCTGACCGGCTACGTGCTGAGCATC 
GCCCTGGCCGGCCTGCTTGGCTGGATGCTCGCGCGCAAGGTGATGGAGCCGGTGGTGCGCCTGGCGCGCCAG 
GTGCGGCATCGCGAACAGTTGCTCGGTCTGGCGCCGCCGTTGGCGCCGGACTACGCCAACGACGAGGTCGGC 
GAGCTGGCCGCTTCCTTCGACGAGACCCTTGGCCGCCTGCGCGACGCGCTCAAGCGCGAGCAATTGTTCACC 
AGCGACGTCAGTCATGAGTTGCGTACGCCGTTGATGGTCATCGCCACCTCGTGCGAACTGCTGGCCGAAGAA 
CCCAGCCTCGGCCCGCGCGCCCGTGGCCAACTGGAGCGGATGACCAAGGCCACCGAGGAGATGCGCGACCTG 
GTGCAAACCTTCCTGTTGCTGGCGCGTGCGCAGAAGGGCGAGGAAAGCCTGGCGCCCCACGGTAGCCTGGAG 
AGCATCGCCGACGACCTGGTCCAGGTCTGGCGCGAACAGGTCGAGGCGCGAGGACTGACCCTGCACTACCGC 
AACGAAGGTGCCTGCGCCGGCCAGTTCAACGCGCCACTGCTGCGCGCGGTGATGGGCAACCTGTTACGCAAC 
GCGACCCACTACACCGATGCCGGGAGCATCACGCTGACCCTCGACGAGCATGGTTTCAGCGTCGAGGACACC 
GGGGCGGGCGTCCCGGAAGAACAACGCGAACGCATCTTCATGCCCTTCGTTCGCGGCAGTTCCAGCTCCGGG 
CGCGGCGAAGGCCTTGGCCTCGGGCTCTCGCTGGTGAAGCGGATCTGCGCGGCCGAGGGCTGGAGCGTAACC 
CTCAGCGCGGTGGAGCCGCACGGCTGCCGGTTCGAAGTTTTACTCGATGTTGCTTGA