ViewGene

Locus Name:
GeneID:
Location:

GeneID:1327
TrivialName: PA14_25450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25450
PAO1 Ortholog Locus:PA2986
Sequence Length:1302
Protein Length:433
Start: 2224228
Stop: 2225529
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06374.1|AE004724_3 (AE004724) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 431/433 (99%), Positives = 432/433 (99%)
Sequence:
GTGCCCGCCGTCCGCTCCCGTCCGGCGAATCCCCCATCGACTCGGTGCATCCGCGACATGTTCAGACCGTTA
CCGTTCTTCATAGGCCTGCGCTACACCCGCGCCAAACGCCGCAACCACTACATCTCGTTCATCTCGCTGACC
TCGATGATCGGTCTGGCGCTGGGCGTGCTGGCGATGATCATCGTGCTCTCGGTGATGAACGGCTTCCAGAAG
GAAATGCGCACGCGGATCCTCGGCATGGTGCCGCATGCCACCATCAGCGCGACGCAGCCGCTGGACGACTGG
CAGACCGTCGCCAACGCGGCGCTGCGGCACCGCGAGGTGGTCGGCGCGGCGCCGTTCGCCGAACTGCAGGGC
ATGCTGTCGTACAAGGGCAACATGCTGCCGGTGCTGGTCAACGGCATCGACCCGCAGGAGGAGCGCAAGGTT
TCCATCATCGGCGAGCACATCGTCCAGGGCAGCCTGGACGACCTCAAGCCTGGCGAGTTCGGCATCGTCCTC
GGCGAGATCACCGCGCGGCGCTTCCATGTCAATGTCGGCGACAAGCTGACCCTGATCGTCCCGGAGGCCACC
AGTGCGCCGGGCGGCATCACTCCGCGCATGCAGCGCTTCACCATCGTCGCCCTGTTCAAGGTCGGCGCCGAA
CTGGACAACTCGCTGGCGCTGATCGACATCGCCGATGCTGGCCAGTTGCTGCGCCTGCAACCGGGCCAGGTG
CCGAGCGTGCGCCTGGAACTGAAGGATCTCTACCAGTCGCCGCAGGTCGCCGCCAAGGTGGTCAAGGAGTTG
GGGCAGGGCTTCAGGTCCAGCGACTGGACCAGGACCCAGGGCAGCCTGTTCAACGCGATGAAGATGGAAAAG
ACCATGATCGGCCTGCTCCTGCTGCTGATCATCGCGGTCGCCGCCTTCAACATCATCGCCACCCTGATCATG
GTGGTCGCCGACAAGCGCACCGACATCGCGATTCTTCGTACCCTCGGCGCCACGCCGCGGCAGATCATGGCG
ATCTTCATGGTCCAGGGCACCGTCATCGGCGTGATCGGGACGGTCATCGGCGGGGTGCTCGGGGTGTTCGCG
GCGTTGAACATCACCGGGATGATCGACCGCATCGAACGGTTGGTCGGACACAAGGTCTTCAGCTCGGATGTG
TACTTCATCAACTACCTGCCTTCCGATCTGCAGGTGCTGGACGTGGTGCTGATCTGCAGCGCTGCATTGCTG
ATGAGCTTCCTCGCCACCCTGTACCCATCCTGGCGCGCGGCGCGGACACAACCGGCCGAGTCGCTGCGCTAC
GAGTGA
Translation:
MPAVRSRPANPPSTRCIRDMFRPLPFFIGLRYTRAKRRNHYISFISLTSMIGLALGVLAMIIVLSVMNGFQK
EMRTRILGMVPHATISATQPLDDWQTVANAALRHREVVGAAPFAELQGMLSYKGNMLPVLVNGIDPQEERKV
SIIGEHIVQGSLDDLKPGEFGIVLGEITARRFHVNVGDKLTLIVPEATSAPGGITPRMQRFTIVALFKVGAE
LDNSLALIDIADAGQLLRLQPGQVPSVRLELKDLYQSPQVAAKVVKELGQGFRSSDWTRTQGSLFNAMKMEK
TMIGLLLLLIIAVAAFNIIATLIMVVADKRTDIAILRTLGATPRQIMAIFMVQGTVIGVIGTVIGGVLGVFA
ALNITGMIDRIERLVGHKVFSSDVYFINYLPSDLQVLDVVLICSAALLMSFLATLYPSWRAARTQPAESLRY
E*
AnnotationID:1336GeneID:1327
AnnotatorUID: diggins
Modification Date/Time: 2005-05-10 07:07:27
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein releasing system, permease protein
Cell Localization:(4) Inner membrane protein
Synonyms:lolE
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative lipoprotein releasing system transmembrane protein
Functional Category Confidence Code:5
COGs:COG4591
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55628.1| (AE016863) lipoprotein releasing system transmembrane protein LolE
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 427

 Score =  587 bits (1512), Expect = e-167
 Identities = 285/417 (68%), Positives = 354/417 (84%)

>gb|AAN67769.1|AE016408_7 (AE016782) lipoprotein releasing system, permease protein
           [Pseudomonas putida KT2440]
          Length = 413

 Score =  554 bits (1428), Expect = e-157
 Identities = 273/411 (66%), Positives = 336/411 (81%)

>gb|AAM41411.1| (AE012319) lipoprotein releasing system transmembrane protein
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
          Length = 416

 Score =  375 bits (963), Expect = e-103
 Identities = 191/416 (45%), Positives = 286/416 (68%), Gaps = 5/416 (1%)
Structural Features:
COG4591, LolE, ABC-type transport system, involved in lipoprotein release, 
permease component 
[Cell envelope biogenesis, outer membrane]
CD-Length = 408 residues, 100.0% aligned
Score =  411 bits (1057), Expect = 9e-116
Identities = 203/417 (48%), Positives = 280/417 (67%), Gaps = 12/417 (2%)
Genomic Context:
Comment:
ReferenceID:14327
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19800
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36068
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1327_cdd.html
URL:
ReferenceID:38126
Author/Investigator(s): Narita S, Tanaka K, Matsuyama S, Tokuda H.
Title: Disruption of lolCDE, encoding an ATP-binding cassette transporter, is lethal for Escherichia coli and prevents release of lipoproteins from the inner membrane.
PubMed: 11844772
MedLine:
Source:
J Bacteriol. 2002 Mar;184(5):1417-22.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11844772
ReferenceID:38127
Author/Investigator(s): Yakushi T, Masuda K, Narita S, Matsuyama S, Tokuda H.
Title: A new ABC transporter mediating the detachment of lipid-modified proteins from membranes.
PubMed: 10783239
MedLine:
Source:
Nat Cell Biol. 2000 Apr;2(4):212-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10783239
Homologs By Global Alignment
Gene ID:1327

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2420 PA2986_tr translation of PA2986 433 99.53 99.76 0 2152.0
77112 gb|AAG06374.1|AE004724_3 (AE004724) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 433 99.30 99.76 0 2149.0
77113 gb|AAO55628.1| (AE016863) lipoprotein releasing system transmembrane protein LolE [Pseudomonas syringae pv. tomato str. DC3000] 441 64.85 80.27 22 1499.0
77114 gb|AAN67769.1|AE016408_7 (AE016782) lipoprotein releasing system, permease protein [Pseudomonas putida KT2440] 433 63.04 77.59 20 1426.0
2421 PA2988_tr translation of PA2988 435 60.00 75.86 21 1342.0
GC ORFID: 44329How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2986Glimmer Score:
Start: 2729697Stop: 2728396
Length: 1302
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2986 translation of PA2986Homolog Bit Score 833.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene900 (ORF: BLASTX 591.0), t_PA2988 (ORF: BLASTX 520.0), psyr_15may02_Scaffold1_revised_gene898 (ORF: BLASTX 509.0), t_PA2986 (ORF: GLIMMER)
GC ORF Sequence
GTGCCCGCCGTCCGCTCCCGTCCGGCGAATCCCCCATCGACTCGGTGCATCCGCGACATGTTCAGACCGTTA
CCGTTCTTCATAGGCCTGCGCTACACCCGCGCCAAACGCCGCAACCACTACATCTCGTTCATCTCGCTGACC
TCGATGATCGGTCTGGCGCTGGGCGTGCTGGCGATGATCATCGTGCTCTCGGTGATGAACGGCTTCCAGAAG
GAAATGCGCACGCGGATCCTCGGCATGGTGCCGCATGCCACCATCAGCGCGACGCAGCCGCTGGACGACTGG
CAGACCGTCGCCAACGCGGCGCTGCGGCACCGCGAGGTGGTCGGCGCGGCGCCGTTCGCCGAACTGCAGGGC
ATGCTGTCGTACAAGGGCAACATGCTGCCGGTGCTGGTCAACGGCATCGACCCGCAGGAGGAGCGCAAGGTT
TCCATCATCGGCGAGCACATCGTCCAGGGCAGCCTGGACGACCTCAAGCCTGGCGAGTTCGGCATCGTCCTC
GGCGAGATCACCGCGCGGCGCTTCCATGTCAATGTCGGCGACAAGCTGACCCTGATCGTCCCGGAGGCCACC
AGTGCGCCGGGCGGCATCACTCCGCGCATGCAGCGCTTCACCATCGTCGCCCTGTTCAAGGTCGGCGCCGAA
CTGGACAACTCGCTGGCGCTGATCGACATCGCCGATGCTGGCCAGTTGCTGCGCCTGCAACCGGGCCAGGTG
CCGAGCGTGCGCCTGGAACTGAAGGATCTCTACCAGTCGCCGCAGGTCGCCGCCAAGGTGGTCAAGGAGTTG
GGGCAGGGCTTCAGGTCCAGCGACTGGACCAGGACCCAGGGCAGCCTGTTCAACGCGATGAAGATGGAAAAG
ACCATGATCGGCCTGCTCCTGCTGCTGATCATCGCGGTCGCCGCCTTCAACATCATCGCCACCCTGATCATG
GTGGTCGCCGACAAGCGCACCGACATCGCGATTCTTCGTACCCTCGGCGCCACGCCGCGGCAGATCATGGCG
ATCTTCATGGTCCAGGGCACCGTCATCGGCGTGATCGGGACGGTCATCGGCGGGGTGCTCGGGGTGTTCGCG
GCGTTGAACATCACCGGGATGATCGACCGCATCGAACGGTTGGTCGGACACAAGGTCTTCAGCTCGGATGTG
TACTTCATCAACTACCTGCCTTCCGATCTGCAGGTGCTGGACGTGGTGCTGATCTGCAGCGCTGCATTGCTG
ATGAGCTTCCTCGCCACCCTGTACCCATCCTGGCGCGCGGCGCGGACACAACCGGCCGAGTCGCTGCGCTAC
GAGTGA