ViewGene

Locus Name:
GeneID:
Location:

GeneID:1326
TrivialName: PA14_35530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35530
PAO1 Ortholog Locus:PA2247
Sequence Length:1233
Protein Length:410
Start: 3159628
Stop: 3158396
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05635.1|AE004650_6 (AE004650) 2-oxoisovalerate dehydrogenase (alpha subunit) [Pseudomonas aeruginosa PAO1]
Identities = 410/410 (100%), Positives = 410/410 (100%)
Sequence:
ATGAGTGATTACGAGCCGTTGCGTCTGCATGTCCCGGAGCCCACGGGGCGTCCTGGCTGCAAGACCGACTTT
TCCTATCTGCACCTGTCCCCCGCCGGCGAGGTACGCAAGCCGCCGGTGGATGTCGAGCCCGCCGAGACCAGC
GACCTGGCCTACAGCCTGGTACGCGTGCTCGACGACGACGGCCACGCCGTCGGTCCCTGGAATCCGCAGCTC
AGCAACGAACAACTGCTGCGCGGCATGCGGGCGATGCTCAAGACCCGTCTGTTCGACGCGCGCATGCTCACC
GCGCAACGGCAGAAAAAGCTTTCCTTCTATATGCAATGCCTCGGCGAGGAAGCCATCGCCACCGCCCACACC
CTGGCCCTGCGCGACGGCGACATGTGCTTCCCGACCTATCGCCAGCAAGGCATCCTGATCACCCGCGAATAC
CCGCTGGTGGACATGATCTGCCAGCTTCTCTCCAACGAGGCCGACCCGCTCAAGGGCCGCCAGCTACCGATC
ATGTACTCGAGCAAGGAGGCCGGTTTCTTCTCCATCTCCGGCAACCTCGCCACCCAGTTCATCCAGGCGGTC
GGCTGGGGCATGGCCTCGGCGATCAAGGGCGACACGCGCATCGCCTCGGCCTGGATCGGCGACGGCGCCACC
GCCGAGTCGGACTTCCACACCGCCCTCACCTTCGCCCATGTCTACCGCGCGCCGGTAATCCTCAACGTGGTC
AACAACCAGTGGGCGATCTCCACCTTCCAGGCCATCGCCGGCGGCGAAGGCACCACCTTCGCCAACCGTGGC
GTGGGCTGCGGGATCGCCTCGCTGCGGGTCGACGGCAATGACTTCCTGGCGGTCTACGCCGCCTCCGAGTGG
GCCGCCGAGCGCGCCCGGCGCAACCTCGGGCCGAGCCTGATCGAATGGGTCACCTACCGCGCCGGCCCGCAC
TCGACTTCGGACGACCCGTCCAAGTACCGCCCCGCCGACGACTGGACCAACTTCCCGCTGGGCGACCCGATC
GCCCGCCTGAAGCGGCACATGATCGGCCTCGGCATCTGGTCGGAGGAACAGCACGAAGCCACCCACAAGGCC
CTCGAAGCCGAAGTACTGGCCGCGCAGAAACAGGCGGAGAGCCATGGCACCCTGATCGACGGCCGGGTGCCG
AGCGCCGCCAGCATGTTCGAGGACGTCTATGCAGAACTGCCGGAGCACCTGCGCCGGCAACGCCAGGAGCTC
GGGGTATGA
Translation:
MSDYEPLRLHVPEPTGRPGCKTDFSYLHLSPAGEVRKPPVDVEPAETSDLAYSLVRVLDDDGHAVGPWNPQL
SNEQLLRGMRAMLKTRLFDARMLTAQRQKKLSFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREY
PLVDMICQLLSNEADPLKGRQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASAWIGDGAT
AESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGTTFANRGVGCGIASLRVDGNDFLAVYAASEW
AAERARRNLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWTNFPLGDPIARLKRHMIGLGIWSEEQHEATHKA
LEAEVLAAQKQAESHGTLIDGRVPSAASMFEDVYAELPEHLRRQRQELGV*
AnnotationID:1335GeneID:1326
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 06:06:48
Gene Name:bkdA1
Confidence Code:2
GeneProduct:2-oxoisovalerate dehydrogenase (alpha subunit)
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:keto acid dehydrogenase E1-alpha subunit
Functional Category Confidence Code:5
COGs:COG1071,pfam00676
Secondary Functional Category(ies):energy metabolism
EC Number:1.2.4.4
Status:ACTIVE
Pathway:
Homology:
>gb|AAA65614.1| (M57613) keto acid dehydrogenase E1-alpha subunit [Pseudomonas
           putida]
          Length = 410

 Score =  673 bits (1737), Expect = 0.0
 Identities = 324/410 (79%), Positives = 364/410 (88%)

>dbj|BAC51596.1| (AP005958) 2-oxoisovalerate dehydrogenase alpha subunit
           [Bradyrhizobium japonicum USDA 110]
          Length = 410

 Score =  551 bits (1420), Expect = e-156
 Identities = 271/410 (66%), Positives = 319/410 (77%)

>gb|AAN33716.1|AE014549_1 (AE014549) 2-oxoisovalerate dehydrogenase E1 component, alpha
           subunit [Brucella suis 1330]
          Length = 410

 Score =  517 bits (1331), Expect = e-146
 Identities = 256/409 (62%), Positives = 312/409 (76%)
Structural Features:
COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, 
eukaryotic type, alpha subunit 
[Energy production and conversion]
CD-Length = 358 residues,  99.7% aligned
Score =  395 bits (1017), Expect = 5e-111
Identities = 165/364 (45%), Positives = 211/364 (57%), Gaps = 13/364 (3%)

pfam00676, E1_dh, Dehydrogenase E1 component. 
CD-Length = 302 residues,  99.0% aligned
Score =  314 bits (807), Expect = 1e-86
Identities = 120/302 (39%), Positives = 159/302 (52%), Gaps = 7/302 (2%)
Genomic Context:
Comment:
ReferenceID:2655
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19798
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32529
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1326_cdd.html
URL:
ReferenceID:34441
Author/Investigator(s): Burns G, Brown T, Hatter K, Idriss JM, Sokatch JR.
Title: Similarity of the E1 subunits of branched-chain-oxoacid dehydrogenase from Pseudomonas putida to the corresponding subunits of mammalian branched-chain-oxoacid and pyruvate dehydrogenases.
PubMed: 3416875
MedLine:
Source:
Eur J Biochem. 1988 Sep 15;176(2):311-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3416875
Homologs By Global Alignment
Gene ID:1326

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2419 PA2247_tr translation of PA2247 410 99.99 99.99 0 2153.0
77102 gb|AAG05635.1|AE004650_6 (AE004650) 2-oxoisovalerate dehydrogenase (alpha subunit) [Pseudomonas aeruginosa PAO1] 410 99.99 99.99 0 2153.0
77103 gb|AAA65614.1| (M57613) keto acid dehydrogenase E1-alpha subunit [Pseudomonas putida] 410 79.02 88.78 0 1737.0
77104 gb|AAN69979.1|AE016636_2 (AE016790) 2-oxoisovalerate dehydrogenase, alpha subunit [Pseudomonas putida KT2440] 410 78.53 88.53 0 1727.0
77105 dbj|BAC51596.1| (AP005958) 2-oxoisovalerate dehydrogenase alpha subunit [Bradyrhizobium japonicum USDA 110] 410 66.09 77.80 0 1420.0
GC ORFID: 44328How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2247Glimmer Score:
Start: 1794288Stop: 1795520
Length: 1233
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2247 translation of PA2247Homolog Bit Score 833.0
Other Homologs: t_PA2247 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGATTACGAGCCGTTGCGTCTGCATGTCCCGGAGCCCACGGGGCGTCCTGGCTGCAAGACCGACTTT
TCCTATCTGCACCTGTCCCCCGCCGGCGAGGTACGCAAGCCGCCGGTGGATGTCGAGCCCGCCGAGACCAGC
GACCTGGCCTACAGCCTGGTACGCGTGCTCGACGACGACGGCCACGCCGTCGGTCCCTGGAATCCGCAGCTC
AGCAACGAACAACTGCTGCGCGGCATGCGGGCGATGCTCAAGACCCGTCTGTTCGACGCGCGCATGCTCACC
GCGCAACGGCAGAAAAAGCTTTCCTTCTATATGCAATGCCTCGGCGAGGAAGCCATCGCCACCGCCCACACC
CTGGCCCTGCGCGACGGCGACATGTGCTTCCCGACCTATCGCCAGCAAGGCATCCTGATCACCCGCGAATAC
CCGCTGGTGGACATGATCTGCCAGCTTCTCTCCAACGAGGCCGACCCGCTCAAGGGCCGCCAGCTACCGATC
ATGTACTCGAGCAAGGAGGCCGGTTTCTTCTCCATCTCCGGCAACCTCGCCACCCAGTTCATCCAGGCGGTC
GGCTGGGGCATGGCCTCGGCGATCAAGGGCGACACGCGCATCGCCTCGGCCTGGATCGGCGACGGCGCCACC
GCCGAGTCGGACTTCCACACCGCCCTCACCTTCGCCCATGTCTACCGCGCGCCGGTAATCCTCAACGTGGTC
AACAACCAGTGGGCGATCTCCACCTTCCAGGCCATCGCCGGCGGCGAAGGCACCACCTTCGCCAACCGTGGC
GTGGGCTGCGGGATCGCCTCGCTGCGGGTCGACGGCAATGACTTCCTGGCGGTCTACGCCGCCTCCGAGTGG
GCCGCCGAGCGCGCCCGGCGCAACCTCGGGCCGAGCCTGATCGAATGGGTCACCTACCGCGCCGGCCCGCAC
TCGACTTCGGACGACCCGTCCAAGTACCGCCCCGCCGACGACTGGACCAACTTCCCGCTGGGCGACCCGATC
GCCCGCCTGAAGCGGCACATGATCGGCCTCGGCATCTGGTCGGAGGAACAGCACGAAGCCACCCACAAGGCC
CTCGAAGCCGAAGTACTGGCCGCGCAGAAACAGGCGGAGAGCCATGGCACCCTGATCGACGGCCGGGTGCCG
AGCGCCGCCAGCATGTTCGAGGACGTCTATGCAGAACTGCCGGAGCACCTGCGCCGGCAACGCCAGGAGCTC
GGGGTATGA