ViewGene

Locus Name:
GeneID:
Location:

GeneID:1324
TrivialName: PA14_49890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49890
PAO1 Ortholog Locus:PA1120
Sequence Length:1308
Protein Length:435
Start: 4435431
Stop: 4436738
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04509.1|AE004542_5 (AE004542) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 433/435 (99%), Positives = 434/435 (99%)
Sequence:
ATGAACCGTCGTCGTCGCTATACGGGTTCCAATCCATCGCTGCGCCGGGTGCTCTATCGCGCGCACCTGGGC
GTGGCGCTGGTCGCGGTATTCACCGCCGGGCTGGCAGTGACCCTGGTCGGCCTGCTGACCCTGCGCGCCTAC
GCGGACCCCAACCAGCAACTGATCGCCCGTTCCATCAGCTATACCGTCGAAGCCGCGGTGGTCTTCGGCGAT
GCCCAGGCCGCCGAGGAATCCCTGGCGCTGATCGCCTCCAGCGAAGAGGTCTCCAGCGCCATCGTCTACGAC
CGCCAGGGGCAGCCCCTGGCCAGCTGGCATCGGGAAAGCACCGGGCCGCTGCACCTGCTGGAACAGCAACTG
GCGCACTGGCTGCTCAGCGCGCCGACCGAACAACCGATCCTGCACGACGGCCAGAAGATCGGTTCGGTGGAG
GTGAAAGGCTCCGGCGGCAGCCTGCTGCGCTTCCTGCTCACCGGTTTCGCCGGCATGGTCCTGTGCCTGCTG
CTTACCGCCCTGGGCGCCTTCTACCTGTCACGGCGGCTGGTACGCGGTATCGTCGGCCCGCTCGACCAACTG
GCGAAGGTCGCGCATACCGTGCGCCGCGAACGGGATTTCGAGAAGCGCGTACCGGAAGCCGGCATCGCCGAG
CTGAGCCAACTGGGCGAGGACTTCAACGCCCTGCTCGACGAACTCGAATCCTGGCAGGCGCGCTTGCAGGAC
GAGAACGCCTCGCTGGCGCACCAGGCCCACCACGACAGCCTGACCAGCCTGCCCAACCGCGCCTTCTTCGAA
GGCCGCCTGAGCCGGGCGCTGCGCGATGCCAGCGAGCACCGCGAGCAATTGGCGGTACTGTTCATCGACAGC
GACCGTTTCAAGGAGATCAACGACCGCCTCGGCCATGCCGCCGGCGACACCGTGCTGGTCAACATCGCCATG
CGCATCCGTGGGCAGTTGCGCGAAAGCGACCTGGTGGCGCGCCTGGGTGGCGACGAATTCGCCGTCCTGCTC
GCACCGCTGGCGTCCGGCGCCGACGCCCTGCGCATCGCCGACAACATCATCGCCAGCATGCAGGCGCCGATC
CGGCTCAGCGACGGCAGCACGGTGAGTACCTCGCTGACCATCGGCATCGCCCTCTATCCCGAGCACGCGGAT
ACCCCGGCGGCGCTGCTCCACGACGCCGACATGGCGATGTACATCGCCAAGCGCCAGGCCCGCGGCAGCCGG
CGCCTGGCGGAACTCAACGACCCCCGCATCCTTCAGGAAGAAAAGGAGATAGACAGTGCTACCCCAGAGGCT
CCACCCAAGTAG
Translation:
MNRRRRYTGSNPSLRRVLYRAHLGVALVAVFTAGLAVTLVGLLTLRAYADPNQQLIARSISYTVEAAVVFGD
AQAAEESLALIASSEEVSSAIVYDRQGQPLASWHRESTGPLHLLEQQLAHWLLSAPTEQPILHDGQKIGSVE
VKGSGGSLLRFLLTGFAGMVLCLLLTALGAFYLSRRLVRGIVGPLDQLAKVAHTVRRERDFEKRVPEAGIAE
LSQLGEDFNALLDELESWQARLQDENASLAHQAHHDSLTSLPNRAFFEGRLSRALRDASEHREQLAVLFIDS
DRFKEINDRLGHAAGDTVLVNIAMRIRGQLRESDLVARLGGDEFAVLLAPLASGADALRIADNIIASMQAPI
RLSDGSTVSTSLTIGIALYPEHADTPAALLHDADMAMYIAKRQARGSRRLAELNDPRILQEEKEIDSATPEA
PPK*
AnnotationID:1333GeneID:1324
AnnotatorUID: diggins
Modification Date/Time: 2006-02-06 01:01:49
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1120
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01949,smart00267
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70243.1|AE016663_11 (AE016791) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 423

 Score =  469 bits (1207), Expect = e-131
 Identities = 244/401 (60%), Positives = 308/401 (76%)

>emb|CAC89305.1| (AJ414142) putative exported protein [Yersinia pestis CO92]
          Length = 425

 Score =  421 bits (1081), Expect = e-117
 Identities = 222/399 (55%), Positives = 278/399 (69%), Gaps = 1/399 (0%)

>gb|AAO70198.1| (AE016843) putative membrane protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 406

 Score =  257 bits (657), Expect = 9e-68
 Identities = 152/406 (37%), Positives = 225/406 (55%), Gaps = 3/406 (0%)
Structural Features:
cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
CD-Length = 155 residues, 100.0% aligned
Score =  167 bits (424), Expect = 3e-42

smart00267, DUF1, Domain of Unknown Function with GGDEF motif
CD-Length = 172 residues,  97.7% aligned
Score =  156 bits (397), Expect = 4e-39
Identities = 73/170 (42%), Positives = 97/170 (57%), Gaps = 2/170 (1%)
Genomic Context:
Comment:
ReferenceID:2651
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19794
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1324

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2412 PA1120_tr translation of PA1120 435 99.54 99.77 0 2151.0
76839 gb|AAG04509.1|AE004542_5 (AE004542) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 435 99.54 99.77 0 2151.0
76840 gb|AAN70243.1|AE016663_11 (AE016791) GGDEF domain protein [Pseudomonas putida KT2440] 435 57.24 72.87 12 1202.0
76842 emb|CAC89305.1| (AJ414142) putative exported protein [Yersinia pestis CO92] 447 50.11 63.53 34 1071.0
76841 gb|AAM87278.1|AE013976_6 (AE013976) hypothetical [Yersinia pestis KIM] 447 50.11 63.53 34 1071.0
GC ORFID: 44326How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1120Glimmer Score:
Start: 518477Stop: 517170
Length: 1308
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA1120 translation of PA1120Homolog Bit Score 833.0
Other Homologs: t_PA1120 (ORF: GLIMMER)
GC ORF Sequence
ATGAACCGTCGTCGTCGCTATACGGGTTCCAATCCATCGCTGCGCCGGGTGCTCTATCGCGCGCACCTGGGC
GTGGCGCTGGTCGCGGTATTCACCGCCGGGCTGGCAGTGACCCTGGTCGGCCTGCTGACCCTGCGCGCCTAC
GCGGACCCCAACCAGCAACTGATCGCCCGTTCCATCAGCTATACCGTCGAAGCCGCGGTGGTCTTCGGCGAT
GCCCAGGCCGCCGAGGAATCCCTGGCGCTGATCGCCTCCAGCGAAGAGGTCTCCAGCGCCATCGTCTACGAC
CGCCAGGGGCAGCCCCTGGCCAGCTGGCATCGGGAAAGCACCGGGCCGCTGCACCTGCTGGAACAGCAACTG
GCGCACTGGCTGCTCAGCGCGCCGACCGAACAACCGATCCTGCACGACGGCCAGAAGATCGGTTCGGTGGAG
GTGAAAGGCTCCGGCGGCAGCCTGCTGCGCTTCCTGCTCACCGGTTTCGCCGGCATGGTCCTGTGCCTGCTG
CTTACCGCCCTGGGCGCCTTCTACCTGTCACGGCGGCTGGTACGCGGTATCGTCGGCCCGCTCGACCAACTG
GCGAAGGTCGCGCATACCGTGCGCCGCGAACGGGATTTCGAGAAGCGCGTACCGGAAGCCGGCATCGCCGAG
CTGAGCCAACTGGGCGAGGACTTCAACGCCCTGCTCGACGAACTCGAATCCTGGCAGGCGCGCTTGCAGGAC
GAGAACGCCTCGCTGGCGCACCAGGCCCACCACGACAGCCTGACCAGCCTGCCCAACCGCGCCTTCTTCGAA
GGCCGCCTGAGCCGGGCGCTGCGCGATGCCAGCGAGCACCGCGAGCAATTGGCGGTACTGTTCATCGACAGC
GACCGTTTCAAGGAGATCAACGACCGCCTCGGCCATGCCGCCGGCGACACCGTGCTGGTCAACATCGCCATG
CGCATCCGTGGGCAGTTGCGCGAAAGCGACCTGGTGGCGCGCCTGGGTGGCGACGAATTCGCCGTCCTGCTC
GCACCGCTGGCGTCCGGCGCCGACGCCCTGCGCATCGCCGACAACATCATCGCCAGCATGCAGGCGCCGATC
CGGCTCAGCGACGGCAGCACGGTGAGTACCTCGCTGACCATCGGCATCGCCCTCTATCCCGAGCACGCGGAT
ACCCCGGCGGCGCTGCTCCACGACGCCGACATGGCGATGTACATCGCCAAGCGCCAGGCCCGCGGCAGCCGG
CGCCTGGCGGAACTCAACGACCCCCGCATCCTTCAGGAAGAAAAGGAGATAGACAGTGCTACCCCAGAGGCT
CCACCCAAGTAG