ViewGene
Locus Name:
GeneID:
Location:

GeneID:1323
TrivialName: PA14_34330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34330
PAO1 Ortholog Locus:PA2345
Sequence Length:1236
Protein Length:411
Start: 3052936
Stop: 3054171
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05733.1|AE004660_9 (AE004660) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 408/411 (99%), Positives = 409/411 (99%)
Sequence:
ATGCAGAGCGCTAACGCTTCAGAACTCACCACCGACATCGCCGTGATCGGCGGCGGCGCGGCCGGCATCGGC
GTGATCGCCAGCCTGCTGAAACGTTCGCCGGGGTTGCGTATCAGCCTGATCGAGCCGGCGGACACCCACTAC
TACCAACCGGGCTGGACCCTGGTCGGTGGCGGCGCCTACGCCCAGGGCGACACCGCGCGGCCGATGGCCGGG
CTGGTCCCGCCCGGCGTGGAGTGGCTGCGCACCCGTGTCGAGCGGGTCGACCCCGAGGCGCGCCGGCTACTG
CTGGAGAGCGGCGGCAGCCTGGAATACCGCAACCTGATCGTCTGCCCCGGCCTGCGCCTGGCCTGGGAGCGC
ATCGAGGGCCTGGAGGAGACCCTCGGGCGCAACGGCGTCACCTCCAACTACCGCTACGACCTGGCGCCCTAC
ACCTGGGAGCTGGTGCGCGGCCTGCGTGGCGGCAAGGCGCTGTTCACCCAGCCGGCGATGCCGATCAAGTGC
GCCGGGGCGCCGCAGAAAGCCATGTACCTGTCCTGCGACCACTGGCTGCGGGAGGGCGTGCTGCAAGACATC
GAGGTCGAGTTCGACCTGGCCGGCGCGGCGTTGTTCGGCGTCGCCGATTTCGTTCCGCCGCTGATGGAATAC
GTGCGCAAGTATTCGGCCGAGCTGGCGTTCAATTCCAACCTGGTGAAGGTCGACGGCGCGGCGCGCAAGGCC
TGGTTCGAGGTGAAGGACGCCGACGGCAACAGCAATCTGGCGGAAAAGGACTTCGACCTGCTGCACGTGGTG
CCGCCGCAACTGCCGCCGACCTTCGTCGCCGCCAGCGGCCTGGGCGACGCGGCCGGCTGGTGCGAAGTCGAC
CCGGCGACCCTGCAACATGTCCGCCATGGCGAGATCTTCGCCCTCGGCGATGTCTGCGGCACCGCCAACGCG
AAGACCGCGGCGGCGGCGCGCAAGCAGATCGTGGTGGTGGCCGAGAACCTTCTCGGCCTGCGCAGCGGCCGT
GGCCTGCCGCTGCGCTACGACGGTTACGGCGGTTGCCCGCTGACCGTCGAGCGCGGCCGGGTGGTGCTGGCG
GAGTTCGGCTACGCCGGCAAGCTGCTGCCGACCTTCCCGCTGGAGCCCACCGCGGCCAGCCGCTTCGCCTGG
CTGCTCAAGCGCCACGTACTGCCCTGGGTGTACTGGAACGCCATGCTCAAGGGCCGGGAGTGGCTGGCGCGG
CCGGGGCGCTAG
Translation:
MQSANASELTTDIAVIGGGAAGIGVIASLLKRSPGLRISLIEPADTHYYQPGWTLVGGGAYAQGDTARPMAG
LVPPGVEWLRTRVERVDPEARRLLLESGGSLEYRNLIVCPGLRLAWERIEGLEETLGRNGVTSNYRYDLAPY
TWELVRGLRGGKALFTQPAMPIKCAGAPQKAMYLSCDHWLREGVLQDIEVEFDLAGAALFGVADFVPPLMEY
VRKYSAELAFNSNLVKVDGAARKAWFEVKDADGNSNLAEKDFDLLHVVPPQLPPTFVAASGLGDAAGWCEVD
PATLQHVRHGEIFALGDVCGTANAKTAAAARKQIVVVAENLLGLRSGRGLPLRYDGYGGCPLTVERGRVVLA
EFGYAGKLLPTFPLEPTAASRFAWLLKRHVLPWVYWNAMLKGREWLARPGR*
AnnotationID:1332GeneID:1323
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:03
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane protein
Cell Localization:()
Synonyms:PA2345
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative NADH dehydrogenase
Functional Category Confidence Code:5
COGs:COG1252
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15244.1| (AL646065) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 421

 Score =  569 bits (1467), Expect = e-162
 Identities = 274/399 (68%), Positives = 308/399 (77%)






 
Structural Features:
 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit 
[Energy production and conversion]
CD-Length = 405 residues,  97.0% aligned
Score = 76.0 bits (187), Expect = 7e-15
Identities = 92/430 (21%), Positives = 152/430 (35%), Gaps = 70/430 (16%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2649




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19792




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32453




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1323_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1323
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2411
                           PA2345_tr
                           translation of PA2345
                           411
                           99.27
                           99.51
                           0
                           2155.0
     

     
     
76831
                           gb|AAG05733.1|AE004660_9
                           (AE004660) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           411
                           99.27
                           99.51
                           0
                           2155.0
     

     
     
76832
                           emb|CAD15244.1|
                           (AL646065) PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           421
                           65.79
                           74.10
                           10
                           1460.0
     

     
     
76836
                           gb|AAN65687.1|AE016195_8
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           424
                           55.66
                           69.81
                           15
                           1233.0
     

     
     
76835
                           gb|AAO53663.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           420
                           55.23
                           68.57
                           12
                           1243.0
     

     






      

          
GC ORFID: 44325How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2345Glimmer Score: 

          
Start: 1900980Stop: 1899745

          
Length: 1236


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2345 translation of PA2345Homolog Bit Score 834.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3013 (ORF: BLASTX 486.0), t_PA2345 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAGCGCTAACGCTTCAGAACTCACCACCGACATCGCCGTGATCGGCGGCGGCGCGGCCGGCATCGGC 
GTGATCGCCAGCCTGCTGAAACGTTCGCCGGGGTTGCGTATCAGCCTGATCGAGCCGGCGGACACCCACTAC 
TACCAACCGGGCTGGACCCTGGTCGGTGGCGGCGCCTACGCCCAGGGCGACACCGCGCGGCCGATGGCCGGG 
CTGGTCCCGCCCGGCGTGGAGTGGCTGCGCACCCGTGTCGAGCGGGTCGACCCCGAGGCGCGCCGGCTACTG 
CTGGAGAGCGGCGGCAGCCTGGAATACCGCAACCTGATCGTCTGCCCCGGCCTGCGCCTGGCCTGGGAGCGC 
ATCGAGGGCCTGGAGGAGACCCTCGGGCGCAACGGCGTCACCTCCAACTACCGCTACGACCTGGCGCCCTAC 
ACCTGGGAGCTGGTGCGCGGCCTGCGTGGCGGCAAGGCGCTGTTCACCCAGCCGGCGATGCCGATCAAGTGC 
GCCGGGGCGCCGCAGAAAGCCATGTACCTGTCCTGCGACCACTGGCTGCGGGAGGGCGTGCTGCAAGACATC 
GAGGTCGAGTTCGACCTGGCCGGCGCGGCGTTGTTCGGCGTCGCCGATTTCGTTCCGCCGCTGATGGAATAC 
GTGCGCAAGTATTCGGCCGAGCTGGCGTTCAATTCCAACCTGGTGAAGGTCGACGGCGCGGCGCGCAAGGCC 
TGGTTCGAGGTGAAGGACGCCGACGGCAACAGCAATCTGGCGGAAAAGGACTTCGACCTGCTGCACGTGGTG 
CCGCCGCAACTGCCGCCGACCTTCGTCGCCGCCAGCGGCCTGGGCGACGCGGCCGGCTGGTGCGAAGTCGAC 
CCGGCGACCCTGCAACATGTCCGCCATGGCGAGATCTTCGCCCTCGGCGATGTCTGCGGCACCGCCAACGCG 
AAGACCGCGGCGGCGGCGCGCAAGCAGATCGTGGTGGTGGCCGAGAACCTTCTCGGCCTGCGCAGCGGCCGT 
GGCCTGCCGCTGCGCTACGACGGTTACGGCGGTTGCCCGCTGACCGTCGAGCGCGGCCGGGTGGTGCTGGCG 
GAGTTCGGCTACGCCGGCAAGCTGCTGCCGACCTTCCCGCTGGAGCCCACCGCGGCCAGCCGCTTCGCCTGG 
CTGCTCAAGCGCCACGTACTGCCCTGGGTGTACTGGAACGCCATGCTCAAGGGCCGGGAGTGGCTGGCGCGG 
CCGGGGCGCTAG