ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1322

TrivialName: PA14_04340

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_04340

PAO1 Ortholog Locus: PA0333

Sequence Length: 1272

Protein Length: 423

Start: 388412

Stop: 389683

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03722.1|AE004471_5 (AE004471) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 418/423 (98%), Positives = 419/423 (99%)

Sequence:

ATGCGTATTCTGCTGGTAGGCGCGGGAGGTTTCGTCGGGCGGCACCTGCTCCCGGCGCTGCTCGCCGCCGGA
CACGAACTGCTCCTCACCGCGCGCCGCCCGCCGGTCGATGCGCCTGCCGGCGTACGCTGGCTGGCGCTCGAC
CTGGAGCGGCTTGCGGAAAGGCCGGACAGCTTCGCCTGGCCCGCCGGGGTCGACCTGCTGATCAACGCCGCC
GGCACCATGAGCCTCGACGAGGCGAGCATGGCTCGCGTCCAGGACAGCGGCGCGCGAGCACTCTTCGACCTC
GCTGCGGCCCATGGGGCGAAGGTCCTGCAGATTTCCGCGCTGGGCGCCGGTGCGCACCCGGACGTGACCTTC
CTCGCCAGCAAGGCGGCGGCCGACCGCCACCTGCTGGAACTGGGCATCCCGGCGCTGGTGCTGCGCCCGTCC
CTGCTGCTGGGGCCGGGCGGCGCCAGCAGCGCCTGGCTGGAACGCCTGTCGCCGCTACCGCTGATTCCCTTG
CTGGACAATCGCGCGCGCCTGCAACCGCTGCATGTCGAGGACCTGGTCGGCGCGGTGCTGGCCTTGCTGCGC
TGCTGGCCGGAGCGGGCGCAGGTGATTCCGCTGGTGGGTCCGCAGGCGCTGACCCAGGGCGAGCTGCTGGAC
GAGCTGCGCCGCGCCCAGGGTTGGCCGCGCGGCCGCTATGTGGTGCCGCCCGCGGCGCTTCTCGATGCGTTG
GGCGGGCTTGGCCGGCGTGCTGGCTGGCGGACACTGAGTCCATCGATGCTGAAGCTGGTGCGCCACGACAAC
CTGGCCGACCCGGCACTCCTCGATGCGGCCTGCGGCTATCGTTGCGCGCCGCTGGCCAGTCGGCTGCTCGGC
TGGCCGCAGGCGGCACGCAGCCTGGCGGCTCTGATGCGGCCGCTGATGCTGGCGGCCCTGGTGCTGATCTGG
CTGGGTACCCTGGTCGCCTGCCTGGGGCCGGGTTACGGCTGGGGCCTGCGGATCCTCGGCGAGGCCGGCATC
CACGGCTGGCCGGCGAGCCTGGCGGTGATCGCCGGGGCCCTGCTCGACGGCGCGCTCGGCGTCGGCCTGCTG
CTCCGCCGCTGGCGTCGGCGCGCGCTGCTGGCGCAGTTCTGGCTGATGCTTGGCTACAGCCTGGCGATCagc
ctGATCCTGCCGCACTACTGGTACGACCCCTACATGGCGGTCGGCAAGAACATCGTGCTGATGGTGGCCACG
CTCTGGCTGCTGGGCGACGAACCTCGAGCCAAGGAGGCCCGTGGATGA

Translation:

MRILLVGAGGFVGRHLLPALLAAGHELLLTARRPPVDAPAGVRWLALDLERLAERPDSFAWPAGVDLLINAA
GTMSLDEASMARVQDSGARALFDLAAAHGAKVLQISALGAGAHPDVTFLASKAAADRHLLELGIPALVLRPS
LLLGPGGASSAWLERLSPLPLIPLLDNRARLQPLHVEDLVGAVLALLRCWPERAQVIPLVGPQALTQGELLD
ELRRAQGWPRGRYVVPPAALLDALGGLGRRAGWRTLSPSMLKLVRHDNLADPALLDAACGYRCAPLASRLLG
WPQAARSLAALMRPLMLAALVLIWLGTLVACLGPGYGWGLRILGEAGIHGWPASLAVIAGALLDGALGVGLL
LRRWRRRALLAQFWLMLGYSLAISLILPHYWYDPYMAVGKNIVLMVATLWLLGDEPRAKEARG*

AnnotationID:1331 GeneID:1322

AnnotatorUID: diggins

Modification Date/Time: 2005-03-24 14:02:42

Gene Name:

Confidence Code: 3

GeneProduct: putative epimerase

Cell Localization: ()

Synonyms: PA0333

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0702

Secondary Functional Category(ies): cell envelope biogenesis, outer membrane

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG0702, Predicted nucleoside-diphosphate-sugar epimerases 
[Cell envelope biogenesis, outer membrane / 
Carbohydrate transport and metabolism] 
CD-Length = 275 residues,  97.5% aligned
Score = 98.8 bits (245), Expect = 9e-22
Identities = 84/274 (30%), Positives = 120/274 (43%), Gaps = 6/274 (2%)

Genomic Context:

Comment:

ReferenceID:2647

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19790

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33659

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1322_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1322

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2410 PA0333_tr translation of PA0333 423 98.81 99.05 0 2157.0

76830 gb|AAG03722.1|AE004471_5 (AE004471) hypothetical protein PA0333 [Pseudomonas aeruginosa PAO1] 423 98.81 99.05 0 2157.0

GC ORFID: `44324`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0333`	Glimmer Score:
Start: `6189754`	Stop: `6191025`
Length: `1272`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0333 translation of PA0333`	Homolog Bit Score `835.0`
Other Homologs: `t_PA0333 (ORF: GLIMMER)`
GC ORF Sequence
ATGCGTATTCTGCTGGTAGGCGCGGGAGGTTTCGTCGGGCGGCACCTGCTCCCGGCGCTGCTCGCCGCCGGA CACGAACTGCTCCTCACCGCGCGCCGCCCGCCGGTCGATGCGCCTGCCGGCGTACGCTGGCTGGCGCTCGAC CTGGAGCGGCTTGCGGAAAGGCCGGACAGCTTCGCCTGGCCCGCCGGGGTCGACCTGCTGATCAACGCCGCC GGCACCATGAGCCTCGACGAGGCGAGCATGGCTCGCGTCCAGGACAGCGGCGCGCGAGCACTCTTCGACCTC GCTGCGGCCCATGGGGCGAAGGTCCTGCAGATTTCCGCGCTGGGCGCCGGTGCGCACCCGGACGTGACCTTC CTCGCCAGCAAGGCGGCGGCCGACCGCCACCTGCTGGAACTGGGCATCCCGGCGCTGGTGCTGCGCCCGTCC CTGCTGCTGGGGCCGGGCGGCGCCAGCAGCGCCTGGCTGGAACGCCTGTCGCCGCTACCGCTGATTCCCTTG CTGGACAATCGCGCGCGCCTGCAACCGCTGCATGTCGAGGACCTGGTCGGCGCGGTGCTGGCCTTGCTGCGC TGCTGGCCGGAGCGGGCGCAGGTGATTCCGCTGGTGGGTCCGCAGGCGCTGACCCAGGGCGAGCTGCTGGAC GAGCTGCGCCGCGCCCAGGGTTGGCCGCGCGGCCGCTATGTGGTGCCGCCCGCGGCGCTTCTCGATGCGTTG GGCGGGCTTGGCCGGCGTGCTGGCTGGCGGACACTGAGTCCATCGATGCTGAAGCTGGTGCGCCACGACAAC CTGGCCGACCCGGCACTCCTCGATGCGGCCTGCGGCTATCGTTGCGCGCCGCTGGCCAGTCGGCTGCTCGGC TGGCCGCAGGCGGCACGCAGCCTGGCGGCTCTGATGCGGCCGCTGATGCTGGCGGCCCTGGTGCTGATCTGG CTGGGTACCCTGGTCGCCTGCCTGGGGCCGGGTTACGGCTGGGGCCTGCGGATCCTCGGCGAGGCCGGCATC CACGGCTGGCCGGCGAGCCTGGCGGTGATCGCCGGGGCCCTGCTCGACGGCGCGCTCGGCGTCGGCCTGCTG CTCCGCCGCTGGCGTCGGCGCGCGCTGCTGGCGCAGTTCTGGCTGATGCTTGGCTACAGCCTGGCGATCagc ctGATCCTGCCGCACTACTGGTACGACCCCTACATGGCGGTCGGCAAGAACATCGTGCTGATGGTGGCCACG CTCTGGCTGCTGGGCGACGAACCTCGAGCCAAGGAGGCCCGTGGATGA