ViewGene
Locus Name:
GeneID:
Location:

GeneID:1321
TrivialName: PA14_67150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67150
PAO1 Ortholog Locus:PA5084
Sequence Length:1251
Protein Length:416
Start: 5994901
Stop: 5993651
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08469.1|AE004921_6 (AE004921) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 415/416 (99%), Positives = 415/416 (99%)
Sequence:
ATGGCTCAGCGGGTTTGCATCATCGGCGCCGGCGTGGTCGGCCTGGCCACGGCCTACGCCCTGGTTCGCGAA
GGATTCGACGTGACCCTGGTGGAGGCGCGCGAGCGGGGCGGGCTGGAAACCAGCTACGCCAATGGCGGGCAG
TTGTCCTATCGCTACGTGGCGCCATTGGCCGACAGCGGCGTGCCGGCCCAGGCGCTCGGCTGGCTGCTGCGC
AATGATGCGCCGTTGCGCCTGCGGCCGCGCCTTGATCCGGCGCAGTGGCGCTGGCTGCTGGGCTTCCTCGCG
GCCTGCCGCGGCTCGCTGAACCGCCGCAATGCCGCGCACCTGCTGCGCCTGGCATTGCTCAGCCAGCGCACC
CTGCAGGACTGGCGCGAGGAGGATGGCCTCGATGGCTTCGACTGGCGGCGCAACGGCAAGCTGGTGGCGTTT
CGCCAACCGGCCAGCTTTGCGCGGGCCCGCCAGGGCCTGGCCGATCCTTCGGCGCAATTCGTCCTGACCGCC
GCCGAGTGCCTCGCGCTGGAGCCGGCCCTGTCCGCCGCGCCCTTCGTCGGCGGCATCCACACGCCGGACGAG
GAGGTCGCCGACTGCCATGCCTTCTGCGTGCAACTTGCCGAGCGCTTGCAGGCTTCCGGACATTGCCGGCAA
CTGCATGGCCGCAGGGTGACGAAGATCGTCGAGGGCGGCGCGGCGGTGCGTGGCGTCGAGGTCGGCGGCGAT
CTCATCGAGGCCGATCATGTGGTGCTGGCCGCCGGCTACCGCAGCGCCGAATTGATGCTGCCGGGCCTGCGC
CTGCCGCTATACCCGCTCAAGGGCTATAGCTTGACCCTGCCGGTCGGCGCGCAGCACCGCGCGCCGGATACC
AGCATCACCGATTACGACCGCAAGATCGTCTACGCGCGAATCGGCGAGCGGCTGCGGATCGCCGCGATGGTC
GACATCGTCGGCTTCGACCCCGGCCTCGAGCCCGCGCGCCTGGCACTGCTGCGCCAGCAGGCGCGGGACACG
TTCCCGCAGGGCGGCGATTTCGACGCCGCCGTCGAATGGGCCGGCATGCGCCCGGCCACGCCCACCGGGGTA
CCGCTGGTGGGCAACGGCGGCTACCGCAACCTCTGGCTCAACCTCGGCCACGGCGCGCTCGGCTTCACCCTG
GCCTGCGGCAGCGCGCGCCTGCTGGCCGAGCAGATCGGCCGCCGCCCGCCGAGCATCGATACCACTGGCCTG
CTGCCGCGCGGCGCGCTGGCTGGCTGA
Translation:
MAQRVCIIGAGVVGLATAYALVREGFDVTLVEARERGGLETSYANGGQLSYRYVAPLADSGVPAQALGWLLR
NDAPLRLRPRLDPAQWRWLLGFLAACRGSLNRRNAAHLLRLALLSQRTLQDWREEDGLDGFDWRRNGKLVAF
RQPASFARARQGLADPSAQFVLTAAECLALEPALSAAPFVGGIHTPDEEVADCHAFCVQLAERLQASGHCRQ
LHGRRVTKIVEGGAAVRGVEVGGDLIEADHVVLAAGYRSAELMLPGLRLPLYPLKGYSLTLPVGAQHRAPDT
SITDYDRKIVYARIGERLRIAAMVDIVGFDPGLEPARLALLRQQARDTFPQGGDFDAAVEWAGMRPATPTGV
PLVGNGGYRNLWLNLGHGALGFTLACGSARLLAEQIGRRPPSIDTTGLLPRGALAG*
AnnotationID:1330GeneID:1321
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid oxidase
Cell Localization:()
Synonyms:PA5084
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69891.1|AE016628_4 (AE016790) D-amino acid dehydrogenase, small subunit, putative
           [Pseudomonas putida KT2440]
          Length = 397

 Score =  502 bits (1293), Expect = e-141
 Identities = 246/396 (62%), Positives = 300/396 (75%)

>emb|CAE42487.1| (BX640417) putative amino acid dehydrogenase subunit [Bordetella
           pertussis]
          Length = 429

 Score =  354 bits (908), Expect = 6e-97
 Identities = 209/417 (50%), Positives = 262/417 (62%), Gaps = 13/417 (3%)






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  98.7% aligned
Score =  158 bits (399), Expect = 1e-39
Identities = 137/427 (32%), Positives = 168/427 (39%), Gaps = 56/427 (13%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2645




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19788




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34989




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1321_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1321
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2409
                           PA5084_tr
                           translation of PA5084
                           416
                           99.75
                           99.75
                           0
                           2158.0
     

     
     
76819
                           gb|AAG08469.1|AE004921_6
                           (AE004921) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           416
                           99.75
                           99.75
                           0
                           2158.0
     

     
     
76820
                           gb|AAN69891.1|AE016628_4
                           (AE016790) D-amino acid dehydrogenase, small subunit, putative [Pseudomonas putida KT2440]
                           416
                           59.13
                           72.11
                           19
                           1291.0
     

     
     
76821
                           emb|CAE42487.1|
                           (BX640417) putative amino acid dehydrogenase subunit [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           434
                           48.38
                           60.59
                           23
                           920.0
     

     
     
76822
                           emb|CAE33581.1|
                           (BX640446) putative amino acid dehydrogenase subunit [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           434
                           48.38
                           60.59
                           23
                           918.0
     

     






      

          
GC ORFID: 44323How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5084Glimmer Score: 

          
Start: 5258586Stop: 5257336

          
Length: 1251


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5084 translation of PA5084Homolog Bit Score 835.0

          
Other Homologs:  t_PA5084 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCAGCGGGTTTGCATCATCGGCGCCGGCGTGGTCGGCCTGGCCACGGCCTACGCCCTGGTTCGCGAA 
GGATTCGACGTGACCCTGGTGGAGGCGCGCGAGCGGGGCGGGCTGGAAACCAGCTACGCCAATGGCGGGCAG 
TTGTCCTATCGCTACGTGGCGCCATTGGCCGACAGCGGCGTGCCGGCCCAGGCGCTCGGCTGGCTGCTGCGC 
AATGATGCGCCGTTGCGCCTGCGGCCGCGCCTTGATCCGGCGCAGTGGCGCTGGCTGCTGGGCTTCCTCGCG 
GCCTGCCGCGGCTCGCTGAACCGCCGCAATGCCGCGCACCTGCTGCGCCTGGCATTGCTCAGCCAGCGCACC 
CTGCAGGACTGGCGCGAGGAGGATGGCCTCGATGGCTTCGACTGGCGGCGCAACGGCAAGCTGGTGGCGTTT 
CGCCAACCGGCCAGCTTTGCGCGGGCCCGCCAGGGCCTGGCCGATCCTTCGGCGCAATTCGTCCTGACCGCC 
GCCGAGTGCCTCGCGCTGGAGCCGGCCCTGTCCGCCGCGCCCTTCGTCGGCGGCATCCACACGCCGGACGAG 
GAGGTCGCCGACTGCCATGCCTTCTGCGTGCAACTTGCCGAGCGCTTGCAGGCTTCCGGACATTGCCGGCAA 
CTGCATGGCCGCAGGGTGACGAAGATCGTCGAGGGCGGCGCGGCGGTGCGTGGCGTCGAGGTCGGCGGCGAT 
CTCATCGAGGCCGATCATGTGGTGCTGGCCGCCGGCTACCGCAGCGCCGAATTGATGCTGCCGGGCCTGCGC 
CTGCCGCTATACCCGCTCAAGGGCTATAGCTTGACCCTGCCGGTCGGCGCGCAGCACCGCGCGCCGGATACC 
AGCATCACCGATTACGACCGCAAGATCGTCTACGCGCGAATCGGCGAGCGGCTGCGGATCGCCGCGATGGTC 
GACATCGTCGGCTTCGACCCCGGCCTCGAGCCCGCGCGCCTGGCACTGCTGCGCCAGCAGGCGCGGGACACG 
TTCCCGCAGGGCGGCGATTTCGACGCCGCCGTCGAATGGGCCGGCATGCGCCCGGCCACGCCCACCGGGGTA 
CCGCTGGTGGGCAACGGCGGCTACCGCAACCTCTGGCTCAACCTCGGCCACGGCGCGCTCGGCTTCACCCTG 
GCCTGCGGCAGCGCGCGCCTGCTGGCCGAGCAGATCGGCCGCCGCCCGCCGAGCATCGATACCACTGGCCTG 
CTGCCGCGCGGCGCGCTGGCTGGCTGA