ViewGene

Locus Name:
GeneID:
Location:

GeneID:1320
TrivialName: PA14_20670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20670
PAO1 Ortholog Locus:PA3356
Sequence Length:1242
Protein Length:413
Start: 1779377
Stop: 1780618
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06744.1|AE004758_1 (AE004758) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 410/413 (99%), Positives = 411/413 (99%)
Sequence:
ATGACCGGCGAGGGCTTCCTCAGCGGCCGGCGCCTGCAGCTCGCCCGTGGCGTGCTGCTGCAATGCATCATG
GGCGGCTACCCGCCGGCGCGCTTCTATGGCAGCGACGATGGCGACCTGGCGCTGGTCGCCGAGCCGACCCAG
GTCCATCGCCTGCCCTGGAGCAACACTCCGCGCGCCTTCGCCATCTGCGATGCGCAGGAACTGGATGGCTCG
CCGTCCGGGCTGTCCACCCGCGGCCTGCTCAAGCAGGTGGTGGCGCGCTACGCCGCCCACGGCTGGCAACCG
GTGGTGGCCACCGAACTGGAATTCTTCGTCTTCGCCCCGAACACCGATCCCAACGAGCCGTTCCAGGCCCCG
CTGGGGCCGGATGGCCGGCGCGAGCTGGGCTATTCGGCCTTCAGCGTGTCTTCCAACAACGGCCTGCGGCCG
TTCTTCGAGGACGTCTACCGCTGCATGGATGCGCTGGGCCTGGTGCGCGACACCTTCATGCACGAGATGGGC
ACCAGCCAGTTCGAGATCAACTTCCTGCATGGCGACCCGGTCCTGCTGGCCGACCAGACCTTCCTGTTCAAG
CACCTGCTCAAGGAGGTCGCGCTCAAGCACGGCCTGATCGTGGTGTGCATGGCCAAGCCGCTGGCGAAGACG
CCGGGCAGCTCGATGCACATCCACCAGAGCATCGTCGAACTGGACGGCGGGCGAAACATCTTCAGCGAAGCC
GATGGCGAGCCTTCCGCCGCGTTCCGCCACTTCATCGGCGGCCAGCAGGCCTGCCTGGCGGACTTCACGCCC
TTCTTCGCGCCGCACGTGAACTCCTTCCAGCGCCTCTGCCATCCCTACGCATCGCCGAACAACGCCTGCTGG
TCCCACGACAACCGCGCCGCCGGCCTGCGCATCCCGGCCAGCGGAGCCTCCGCGCGGCGCGTCGAGAATCGC
CTGCCAGGCGCCGACGCCAACCCTTACCTGGCCATCGCCGCCAGCCTGGCCGCCGGTCTCTACGGCCTGGAG
CACGAACTGGAGCCGAGCCCGGCGATCCAGGGCGAGTTCGAGGTACCGGAGGAACTGACCCTGCCCTGCACC
ATGTACGATGCCCTGCGGCGTCTGAAAGGCAGCGCGCTGGCGCGCGAACTGTTCGGCAGCGAGTTCGTCGAA
GGCTACGTGGCGACCAAGAGCATGGAACTGACCAGCTTCTTCGACGAGATCAGCCCCTGGGAGCGTCGTGTC
CTGGCAGCCCAGGCCTGA
Translation:
MTGEGFLSGRRLQLARGVLLQCIMGGYPPARFYGSDDGDLALVAEPTQVHRLPWSNTPRAFAICDAQELDGS
PSGLSTRGLLKQVVARYAAHGWQPVVATELEFFVFAPNTDPNEPFQAPLGPDGRRELGYSAFSVSSNNGLRP
FFEDVYRCMDALGLVRDTFMHEMGTSQFEINFLHGDPVLLADQTFLFKHLLKEVALKHGLIVVCMAKPLAKT
PGSSMHIHQSIVELDGGRNIFSEADGEPSAAFRHFIGGQQACLADFTPFFAPHVNSFQRLCHPYASPNNACW
SHDNRAAGLRIPASGASARRVENRLPGADANPYLAIAASLAAGLYGLEHELEPSPAIQGEFEVPEELTLPCT
MYDALRRLKGSALARELFGSEFVEGYVATKSMELTSFFDEISPWERRVLAAQA*
AnnotationID:1329GeneID:1320
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine synthetase
Cell Localization:()
Synonyms:PA3356
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00120,COG0174
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69977.1|AE016635_13 (AE016790) glutamine synthetase, putative [Pseudomonas putida
           KT2440]
          Length = 413

 Score =  691 bits (1782), Expect = 0.0
 Identities = 334/413 (80%), Positives = 366/413 (88%)

>gb|AAO55439.1| (AE016862) glutamine synthetase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 447

 Score =  664 bits (1712), Expect = 0.0
 Identities = 322/412 (78%), Positives = 361/412 (87%)

Structural Features:
pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
CD-Length = 260 residues,  99.2% aligned
Score =  263 bits (675), Expect = 2e-71
Identities = 100/262 (38%), Positives = 139/262 (53%), Gaps = 7/262 (2%)

COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]
CD-Length = 443 residues,  93.5% aligned
Score =  379 bits (974), Expect = 4e-106
Identities = 159/423 (37%), Positives = 217/423 (51%), Gaps = 27/423 (6%)
Genomic Context:
Comment:
ReferenceID:2643
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19786
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32198
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1320_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1320

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2407 PA3356_tr translation of PA3356 413 99.27 99.51 0 2158.0
76798 gb|AAG06744.1|AE004758_1 (AE004758) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 413 99.27 99.51 0 2158.0
76799 gb|AAN69977.1|AE016635_13 (AE016790) glutamine synthetase, putative [Pseudomonas putida KT2440] 413 80.87 88.61 0 1782.0
76800 gb|AAO55439.1| (AE016862) glutamine synthetase [Pseudomonas syringae pv. tomato str. DC3000] 447 72.03 80.76 34 1712.0
76801 gb|AAA65612.1| (M57613) branched-chain keto acid dehydrogenase [Pseudomonas putida] 413 50.36 54.72 155 1112.0
GC ORFID: 44322How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3356Glimmer Score:
Start: 3174555Stop: 3173314
Length: 1242
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3356 translation of PA3356Homolog Bit Score 835.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7882 (ORF: BLASTX 711.0), t_PA0298 (ORF: BLASTX 363.0), psyr_15may02_Scaffold6_revised_gene6509 (ORF: BLASTX 361.0), t_PA3356 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGGCGAGGGCTTCCTCAGCGGCCGGCGCCTGCAGCTCGCCCGTGGCGTGCTGCTGCAATGCATCATG
GGCGGCTACCCGCCGGCGCGCTTCTATGGCAGCGACGATGGCGACCTGGCGCTGGTCGCCGAGCCGACCCAG
GTCCATCGCCTGCCCTGGAGCAACACTCCGCGCGCCTTCGCCATCTGCGATGCGCAGGAACTGGATGGCTCG
CCGTCCGGGCTGTCCACCCGCGGCCTGCTCAAGCAGGTGGTGGCGCGCTACGCCGCCCACGGCTGGCAACCG
GTGGTGGCCACCGAACTGGAATTCTTCGTCTTCGCCCCGAACACCGATCCCAACGAGCCGTTCCAGGCCCCG
CTGGGGCCGGATGGCCGGCGCGAGCTGGGCTATTCGGCCTTCAGCGTGTCTTCCAACAACGGCCTGCGGCCG
TTCTTCGAGGACGTCTACCGCTGCATGGATGCGCTGGGCCTGGTGCGCGACACCTTCATGCACGAGATGGGC
ACCAGCCAGTTCGAGATCAACTTCCTGCATGGCGACCCGGTCCTGCTGGCCGACCAGACCTTCCTGTTCAAG
CACCTGCTCAAGGAGGTCGCGCTCAAGCACGGCCTGATCGTGGTGTGCATGGCCAAGCCGCTGGCGAAGACG
CCGGGCAGCTCGATGCACATCCACCAGAGCATCGTCGAACTGGACGGCGGGCGAAACATCTTCAGCGAAGCC
GATGGCGAGCCTTCCGCCGCGTTCCGCCACTTCATCGGCGGCCAGCAGGCCTGCCTGGCGGACTTCACGCCC
TTCTTCGCGCCGCACGTGAACTCCTTCCAGCGCCTCTGCCATCCCTACGCATCGCCGAACAACGCCTGCTGG
TCCCACGACAACCGCGCCGCCGGCCTGCGCATCCCGGCCAGCGGAGCCTCCGCGCGGCGCGTCGAGAATCGC
CTGCCAGGCGCCGACGCCAACCCTTACCTGGCCATCGCCGCCAGCCTGGCCGCCGGTCTCTACGGCCTGGAG
CACGAACTGGAGCCGAGCCCGGCGATCCAGGGCGAGTTCGAGGTACCGGAGGAACTGACCCTGCCCTGCACC
ATGTACGATGCCCTGCGGCGTCTGAAAGGCAGCGCGCTGGCGCGCGAACTGTTCGGCAGCGAGTTCGTCGAA
GGCTACGTGGCGACCAAGAGCATGGAACTGACCAGCTTCTTCGACGAGATCAGCCCCTGGGAGCGTCGTGTC
CTGGCAGCCCAGGCCTGA