ViewGene
Locus Name:
GeneID:
Location:

GeneID:1319
TrivialName: PA14_36660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36660
PAO1 Ortholog Locus:PA2158
Sequence Length:1248
Protein Length:415
Start: 3264667
Stop: 3265914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05546.1|AE004642_13 (AE004642) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
Identities = 415/415 (100%), Positives = 415/415 (100%)
Sequence:
ATGAAAGCCGTGGTATTCCATGACATCGGCGACATCCGCCTGGAAGACGTGGCGGAGCCGCGCCTGCAGGAA
CCCACCGACGCCATCGTGCGGCTGACCGCCTCGGCGATCTGCGGCACCGACCTGCACTTCGTCCGTGGCAGC
GTCGGCGGCATGCGTCCGGGAACCATCCTCGGCCATGAGGGCGTGGGCATCGTCGAGGCGCTCGGCGACGAA
GTGCGCAACCTGCAGGTCGGCGACCGGGTGGTGATTCCCTCGACCATTGCCTGCGGCAATTGCGTGTATTGC
CGAGCCGGCTACTACGCCCAGTGCGACGTCGCCAACCCCGGCGGCAGCCAGGCCGGCACCGCGTTCTTCGGC
GGTCCCCGGGCCAACGGCGGCTTCCATGGGCTGCAAGCCGAGAAAGCGCGGATTCCCTATGCCAACATCGGC
CTGATCCGCCTGCCCAGCAGCATCAGCGACGACCAGGCGATACTCCTGTCGGACATCTTCCCCACCGGTTAC
TTCGGCGCCGAACTGGCCGGTATCGCCCCCGGCAACACCGTCGCCGTGTTCGGCTGCGGTCCGGTCGGCCAG
TTCGCCATCGCCAGCGCGTTGCTCCTCGGCGCCGCCCGGGTGTTCGCCATCGACCGCCACCCGGACCGCCTG
CACATGGCCCGCCAGCAAGGCGCCGAAGTGATCGACTTCGAGCGCGAGGATCCGGTCCAGGCCCTGCGCTGG
CTGACCGCCGGGATCGGCGTGGACCGCGCCATCGACGCCGTCGGCGTGGACGCCGAGCACAGCCATGGCACC
GCCACCCCGGCGCCGCGCCAGGAGGGCACCAGCTGGAGTCCCGGCAACGCCCCCGCACAGGCCCTGGAGTGG
GCGGTGCAGGGCCTGGCCAAGGCCGGCACCCTGTCGATCATCGGCGTCTACGCCGAAGACTCGCGGCAGTTT
CCCATCGGCCTGGCGATGAACCGCAACCTGACCATCCGCATGGGCAACTGCCACCACCGCAAGTACATTCCG
CTGCTGCTCGAACATGTGCTCAGCGGACGCATCGACCCGGCGAAGATCCTCACCCAGGTGAAGCCGATCGGC
GACGCCATCGAGGCCTTCGAAGCCTTCGACCGCCGCGAGACCGGCTGGATCAAGGTCGAACTGGTGCCGCAG
AAGCGCCAGGTCGAGGGCAGCGAGGAACGCCTCGACGAACGCGCGGTGGACGAACTGGCGCGCCGGCCGACG
CCGGAAAGCGGCGCCCGGGGGTGA
Translation:
MKAVVFHDIGDIRLEDVAEPRLQEPTDAIVRLTASAICGTDLHFVRGSVGGMRPGTILGHEGVGIVEALGDE
VRNLQVGDRVVIPSTIACGNCVYCRAGYYAQCDVANPGGSQAGTAFFGGPRANGGFHGLQAEKARIPYANIG
LIRLPSSISDDQAILLSDIFPTGYFGAELAGIAPGNTVAVFGCGPVGQFAIASALLLGAARVFAIDRHPDRL
HMARQQGAEVIDFEREDPVQALRWLTAGIGVDRAIDAVGVDAEHSHGTATPAPRQEGTSWSPGNAPAQALEW
AVQGLAKAGTLSIIGVYAEDSRQFPIGLAMNRNLTIRMGNCHHRKYIPLLLEHVLSGRIDPAKILTQVKPIG
DAIEAFEAFDRRETGWIKVELVPQKRQVEGSEERLDERAVDELARRPTPESGARG*
AnnotationID:1328GeneID:1319
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 12:12:43
Gene Name:
Confidence Code:3
GeneProduct:putative Zn-dependent alcohol dehydrogenase
Cell Localization:()
Synonyms:PA2158
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1063,pfam00107,COG1064
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB77033.1| (AP003599) alcohol dehydrogenase [Nostoc sp. PCC 7120]
          Length = 409

 Score =  541 bits (1395), Expect = e-153
 Identities = 266/402 (66%), Positives = 313/402 (77%), Gaps = 19/402 (4%)

>gb|AAF11826.1|AE002060_5 (AE002060) alcohol dehydrogenase, zinc-containing [Deinococcus
           radiodurans]
          Length = 431

 Score =  492 bits (1267), Expect = e-138
 Identities = 244/403 (60%), Positives = 306/403 (75%), Gaps = 21/403 (5%)

>emb|CAD76961.1| (BX294152) glutathione-dependent formaldehyde dehydrogenase
           [Pirellula sp.]
          Length = 389

 Score =  320 bits (820), Expect = 1e-86
 Identities = 175/391 (44%), Positives = 239/391 (61%), Gaps = 10/391 (2%)








 
Structural Features:
COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases 
[Amino acid transport and metabolism]
CD-Length = 350 residues, 100.0% aligned
Score =  274 bits (701), Expect = 2e-74
Identities = 144/388 (37%), Positives = 197/388 (50%), Gaps = 43/388 (11%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase. 
CD-Length = 341 residues,  99.1% aligned
Score =  201 bits (513), Expect = 1e-52
Identities = 108/382 (28%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

COG1064, AdhP, Zn-dependent alcohol dehydrogenases
CD-Length = 339 residues,  94.1% aligned
Score =  164 bits (417), Expect = 2e-41
Identities = 99/371 (26%), Positives = 160/371 (43%), Gaps = 56/371 (15%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2641




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19784




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32570




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1319_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1319
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2405
                           PA2158_tr
                           translation of PA2158
                           415
                           99.99
                           99.99
                           0
                           2157.0
     

     
     
76781
                           gb|AAG05546.1|AE004642_13
                           (AE004642) probable alcohol dehydrogenase (Zn-dependent) [Pseudomonas aeruginosa PAO1]
                           415
                           99.99
                           99.99
                           0
                           2157.0
     

     
     
76782
                           dbj|BAB77033.1|
                           (AP003599) alcohol dehydrogenase [Nostoc sp. PCC 7120]
                           434
                           61.29
                           72.11
                           44
                           1398.0
     

     
     
76783
                           gb|AAF11826.1|AE002060_5
                           (AE002060) alcohol dehydrogenase, zinc-containing [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           461
                           52.92
                           66.37
                           76
                           1278.0
     

     
     
76787
                           emb|CAD76961.1|
                           (BX294152) glutathione-dependent formaldehyde dehydrogenase [Pirellula sp.] [Pirellula sp. 1]
                           423
                           41.37
                           56.50
                           42
                           831.0
     

     






      

          
GC ORFID: 44321How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2158Glimmer Score: 

          
Start: 1689247Stop: 1688000

          
Length: 1248


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2158 translation of PA2158Homolog Bit Score 835.0

          
Other Homologs:  t_PA2158 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCCGTGGTATTCCATGACATCGGCGACATCCGCCTGGAAGACGTGGCGGAGCCGCGCCTGCAGGAA 
CCCACCGACGCCATCGTGCGGCTGACCGCCTCGGCGATCTGCGGCACCGACCTGCACTTCGTCCGTGGCAGC 
GTCGGCGGCATGCGTCCGGGAACCATCCTCGGCCATGAGGGCGTGGGCATCGTCGAGGCGCTCGGCGACGAA 
GTGCGCAACCTGCAGGTCGGCGACCGGGTGGTGATTCCCTCGACCATTGCCTGCGGCAATTGCGTGTATTGC 
CGAGCCGGCTACTACGCCCAGTGCGACGTCGCCAACCCCGGCGGCAGCCAGGCCGGCACCGCGTTCTTCGGC 
GGTCCCCGGGCCAACGGCGGCTTCCATGGGCTGCAAGCCGAGAAAGCGCGGATTCCCTATGCCAACATCGGC 
CTGATCCGCCTGCCCAGCAGCATCAGCGACGACCAGGCGATACTCCTGTCGGACATCTTCCCCACCGGTTAC 
TTCGGCGCCGAACTGGCCGGTATCGCCCCCGGCAACACCGTCGCCGTGTTCGGCTGCGGTCCGGTCGGCCAG 
TTCGCCATCGCCAGCGCGTTGCTCCTCGGCGCCGCCCGGGTGTTCGCCATCGACCGCCACCCGGACCGCCTG 
CACATGGCCCGCCAGCAAGGCGCCGAAGTGATCGACTTCGAGCGCGAGGATCCGGTCCAGGCCCTGCGCTGG 
CTGACCGCCGGGATCGGCGTGGACCGCGCCATCGACGCCGTCGGCGTGGACGCCGAGCACAGCCATGGCACC 
GCCACCCCGGCGCCGCGCCAGGAGGGCACCAGCTGGAGTCCCGGCAACGCCCCCGCACAGGCCCTGGAGTGG 
GCGGTGCAGGGCCTGGCCAAGGCCGGCACCCTGTCGATCATCGGCGTCTACGCCGAAGACTCGCGGCAGTTT 
CCCATCGGCCTGGCGATGAACCGCAACCTGACCATCCGCATGGGCAACTGCCACCACCGCAAGTACATTCCG 
CTGCTGCTCGAACATGTGCTCAGCGGACGCATCGACCCGGCGAAGATCCTCACCCAGGTGAAGCCGATCGGC 
GACGCCATCGAGGCCTTCGAAGCCTTCGACCGCCGCGAGACCGGCTGGATCAAGGTCGAACTGGTGCCGCAG 
AAGCGCCAGGTCGAGGGCAGCGAGGAACGCCTCGACGAACGCGCGGTGGACGAACTGGCGCGCCGGCCGACG 
CCGGAAAGCGGCGCCCGGGGGTGA