ViewGene
Locus Name:
GeneID:
Location:

GeneID:1318
TrivialName: PA14_37610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37610
PAO1 Ortholog Locus:PA2080
Sequence Length:1251
Protein Length:416
Start: 3346051
Stop: 3347301
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05468.1|AE004635_6 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 413/416 (99%), Positives = 415/416 (99%)
Sequence:
ATGACCACTCGTGACGACTGCCTGGCGCTCGACGCCGGCGATCCCCTGGCCGACCTGCGCCAACTGTTCGCC
CTGCCCGACGGCGTGATCTACCTCGACGGCAACTCCCTCGGCGCCCGCCCCCGGGCCGCCGTGGAGCGCGCC
GCCGAAGTGGTCGCCGCGGAATGGGGCGAGGGCCTCATCCGCAGCTGGAACAGCGCCGACTGGCGCGGCCTG
CCGGAGCGCCTCGGCGACAAGCTGGCGCCCCTGATCGGCGCGCGCGCCGGCGAAGTGGTGATCACCGACACC
ACCTCGATCAACCTGTTCAAGGTGCTCAGCGCCGCCCTGCGGATCCAGGAGGAAGAAGCGCCAGGGCGCAAG
GTGATCGTTTCCGAATCGAGCAACTTCCCCACTGATCTGTACATCGCCGAGGGCCTTACCGACATGCTCCAG
CGCGGCTACCGGCTGCGCCTGGTGGATGGCCCGGAGCAACTGCCGGCGGCGATCGACGCGGATACCGCGGTG
GTGATGCTCAGCCATGTCAACTACAAGACCGGCTACCTGCACGACATGCGCGAGGTCACCCGCCTGGTCCAC
GAAAACGGCGCCCTGGCGATCTGGGACCTGGCCCACTCGGCCGGCGCGCTGCCGCTGGACCTGCACGCGGCC
GAGGCCGACTACGCCATCGGCTGCACCTACAAGTACCTCAACGGCGGCCCCGGCTCGCCGGCCTACGTGTGG
GTCGCGCCACGCCTGCGCGAGCGTGTCTGGCAACCGCTGTCCGGCTGGTTCGGTCATTCCCGCCAGTTCGCC
ATGGAGCCGCGCTACCAGCCCGGCGAAGGCATCACCCGGTTCCTCTGCGGCACCCAGCCGATCACCTCGCTG
GCCCTGGTCGAATGCGGCCTGGATATCTTCGCCCGGACCGACATGCAGCGCCTGCGCGACAAGTCGCTGGCC
CTCGCCGACCTGTTCATCGAATTGGTGGAAAGCCGTTGCGAACGCTTCGGCCTGACCCTGGTGACCCCGCGC
GAGCATGCCCGGCGCGGCAGCCATGTCAGCTTCGAGCATGCCCAGGGCTACGCCATCGTCCAGGCCCTGATC
GACCGCGGGGTAATCGGCGACTACCGCGAGCCGGGCATCCTGCGCTTCGGCTTCACCCCGCTGTACACCCGC
TTCGTCGAGGTCTGGGATGCGGTGCAGGCGTTGCTGGAAATCCTCCAGAGCGAAGCCTGGAAAGAGCCGCGC
TACCAGGTCCGGCACAAGGTGACCTGA
Translation:
MTTRDDCLALDAGDPLADLRQLFALPDGVIYLDGNSLGARPRAAVERAAEVVAAEWGEGLIRSWNSADWRGL
PERLGDKLAPLIGARAGEVVITDTTSINLFKVLSAALRIQEEEAPGRKVIVSESSNFPTDLYIAEGLTDMLQ
RGYRLRLVDGPEQLPAAIDADTAVVMLSHVNYKTGYLHDMREVTRLVHENGALAIWDLAHSAGALPLDLHAA
EADYAIGCTYKYLNGGPGSPAYVWVAPRLRERVWQPLSGWFGHSRQFAMEPRYQPGEGITRFLCGTQPITSL
ALVECGLDIFARTDMQRLRDKSLALADLFIELVESRCERFGLTLVTPREHARRGSHVSFEHAQGYAIVQALI
DRGVIGDYREPGILRFGFTPLYTRFVEVWDAVQALLEILQSEAWKEPRYQVRHKVT*
AnnotationID:1327GeneID:1318
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative kynureninase
Cell Localization:()
Synonyms:PA2080
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative kyurenine hydrolase
Functional Category Confidence Code:5
COGs:COG3844
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14289.1| (AL646060) PROBABLE HYDROLASE PROTEIN [Ralstonia solanacearum]
          Length = 417

 Score =  607 bits (1566), Expect = e-173
 Identities = 290/414 (70%), Positives = 340/414 (82%)

>dbj|BAB48176.1| (AP002995) probable kynureninase (kyurenine hydrolase)
           [Mesorhizobium loti]
          Length = 415

 Score =  436 bits (1120), Expect = e-121
 Identities = 221/410 (53%), Positives = 285/410 (69%), Gaps = 8/410 (1%)








 
Structural Features:
COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]
CD-Length = 407 residues,  99.3% aligned
Score =  605 bits (1562), Expect = 2e-174
Identities = 284/408 (69%), Positives = 316/408 (77%), Gaps = 6/408 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2639




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19782




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32627




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1318_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1318
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2404
                           PA2080_tr
                           translation of PA2080
                           416
                           99.27
                           99.75
                           0
                           2157.0
     

     
     
76771
                           gb|AAG05468.1|AE004635_6
                           (AE004635) hypothetical protein PA2080 [Pseudomonas aeruginosa PAO1]
                           416
                           99.27
                           99.75
                           0
                           2157.0
     

     
     
76772
                           emb|CAD14289.1|
                           (AL646060) PROBABLE HYDROLASE PROTEIN [Ralstonia solanacearum]
                           417
                           69.54
                           81.53
                           1
                           1563.0
     

     
     
76773
                           emb|CAE30744.1|
                           (BX640437) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           416
                           63.70
                           75.72
                           0
                           1405.0
     

     
     
76775
                           emb|CAE39983.1|
                           (BX640423) conserved hypothetical protein [Bordetella parapertussis]
                           416
                           63.46
                           75.48
                           0
                           1397.0
     

     






      

          
GC ORFID: 44320How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2080Glimmer Score: 

          
Start: 1607863Stop: 1606613

          
Length: 1251


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2080 translation of PA2080Homolog Bit Score 835.0

          
Other Homologs:  t_PA2080 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACTCGTGACGACTGCCTGGCGCTCGACGCCGGCGATCCCCTGGCCGACCTGCGCCAACTGTTCGCC 
CTGCCCGACGGCGTGATCTACCTCGACGGCAACTCCCTCGGCGCCCGCCCCCGGGCCGCCGTGGAGCGCGCC 
GCCGAAGTGGTCGCCGCGGAATGGGGCGAGGGCCTCATCCGCAGCTGGAACAGCGCCGACTGGCGCGGCCTG 
CCGGAGCGCCTCGGCGACAAGCTGGCGCCCCTGATCGGCGCGCGCGCCGGCGAAGTGGTGATCACCGACACC 
ACCTCGATCAACCTGTTCAAGGTGCTCAGCGCCGCCCTGCGGATCCAGGAGGAAGAAGCGCCAGGGCGCAAG 
GTGATCGTTTCCGAATCGAGCAACTTCCCCACTGATCTGTACATCGCCGAGGGCCTTACCGACATGCTCCAG 
CGCGGCTACCGGCTGCGCCTGGTGGATGGCCCGGAGCAACTGCCGGCGGCGATCGACGCGGATACCGCGGTG 
GTGATGCTCAGCCATGTCAACTACAAGACCGGCTACCTGCACGACATGCGCGAGGTCACCCGCCTGGTCCAC 
GAAAACGGCGCCCTGGCGATCTGGGACCTGGCCCACTCGGCCGGCGCGCTGCCGCTGGACCTGCACGCGGCC 
GAGGCCGACTACGCCATCGGCTGCACCTACAAGTACCTCAACGGCGGCCCCGGCTCGCCGGCCTACGTGTGG 
GTCGCGCCACGCCTGCGCGAGCGTGTCTGGCAACCGCTGTCCGGCTGGTTCGGTCATTCCCGCCAGTTCGCC 
ATGGAGCCGCGCTACCAGCCCGGCGAAGGCATCACCCGGTTCCTCTGCGGCACCCAGCCGATCACCTCGCTG 
GCCCTGGTCGAATGCGGCCTGGATATCTTCGCCCGGACCGACATGCAGCGCCTGCGCGACAAGTCGCTGGCC 
CTCGCCGACCTGTTCATCGAATTGGTGGAAAGCCGTTGCGAACGCTTCGGCCTGACCCTGGTGACCCCGCGC 
GAGCATGCCCGGCGCGGCAGCCATGTCAGCTTCGAGCATGCCCAGGGCTACGCCATCGTCCAGGCCCTGATC 
GACCGCGGGGTAATCGGCGACTACCGCGAGCCGGGCATCCTGCGCTTCGGCTTCACCCCGCTGTACACCCGC 
TTCGTCGAGGTCTGGGATGCGGTGCAGGCGTTGCTGGAAATCCTCCAGAGCGAAGCCTGGAAAGAGCCGCGC 
TACCAGGTCCGGCACAAGGTGACCTGA