ViewGene

Locus Name:
GeneID:
Location:

GeneID:1315
TrivialName: PA14_30190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30190
PAO1 Ortholog Locus:PA2623
Sequence Length:1257
Protein Length:418
Start: 2615108
Stop: 2616364
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06011.1|AE004691_2 (AE004691) isocitrate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 418/418 (100%), Positives = 418/418 (100%)
Sequence:
ATGGGATACCAAAAGATCCAGGTGCCGGCGACCGGTGACAAAATCACTGTGAATGCCGACATGTCCTTGAGC
GTACCGAAGAACCCGATCATCCCGTTCATCGAGGGTGATGGCATCGGCGTCGATATCAGCCCGGTCATGATC
AAGGTTGTCGACGCTGCAGTGGAAAAAGCATACAAGGGCGAGCGCAAGATCGCCTGGATGGAAGTCTACGCC
GGCGAGAAGGCCACCCAGGTGTATGACCAGGACACCTGGCTGCCCCAGGAAACCCTGGACGCCGTGCGCGAC
TACGTGGTTTCCATCAAGGGTCCGCTGACCACCCCGGTCGGTGGCGGCATCCGTTCCCTGAACGTGGCCCTG
CGCCAGCAACTCGATCTCTACGTCTGCCAGCGCCCGGTACGCTGGTTCGAAGGCGTGCCCAGCCCGGTGAAG
AAGCCCGGCGACGTAGACATGGTGATCTTCCGCGAGAACTCCGAGGACATCTATGCCGGCGTCGAGTGGAAG
GCCGGTTCGCCGGAGGCGGAGAAGGTCATCAAGTTCCTCACCGAGGAAATGGGCGTCAAGAAAATCCGCTTC
ACCGAGAACTGCGGCATCGGCATCAAGCCGGTTTCCCAGGAAGGCACCAAGCGCCTGGTGCGCAAGGCCCTG
CAATACGCCGTCGACAACGACCGCAGTTCGGTGACCCTGGTGCACAAGGGCAACATCATGAAGTTCACCGAG
GGTGCCTTCAAGGATTGGGGTTACGAAGTCGCGCGCGATGAATTCGGCGCCGAGCTGCTGGACGGCGGTCCG
TGGATGCAGTTCAAGAACCCGAAGACCGGCAAGAACGTCGTGGTCAAGGACGTGATCGCCGACGCCATGTTG
CAGCAGATTCTGCTGCGCCCCGCCGAGTACGACGTGATCGCCACCCTGAACCTGAACGGCGACTATCTCTCC
GACGCCCTGGCGGCCGAGGTCGGCGGCATCGGCATCGCGCCCGGCGCCAACCTGTCCGATTCGGTGGCCATG
TTCGAGGCGACCCACGGCACCGCGCCGAAGTACGCCGGCCAGGACAAGGTCAACCCGGGTTCGCTGATCCTC
TCCGCGGAGATGATGCTGCGCCACATGGGCTGGACCGAGGCGGCCGACCTGATCATCAAGGGCACCAACGGG
GCGATCGCCGCCAAGACCGTGACCTATGACTTCGAACGCCTGATGGACGGCGCGACCCTGCTGTCCTGCTCG
GAGTTCGGCGACGCGATGATCGCCAAGATGTAG
Translation:
MGYQKIQVPATGDKITVNADMSLSVPKNPIIPFIEGDGIGVDISPVMIKVVDAAVEKAYKGERKIAWMEVYA
GEKATQVYDQDTWLPQETLDAVRDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCQRPVRWFEGVPSPVK
KPGDVDMVIFRENSEDIYAGVEWKAGSPEAEKVIKFLTEEMGVKKIRFTENCGIGIKPVSQEGTKRLVRKAL
QYAVDNDRSSVTLVHKGNIMKFTEGAFKDWGYEVARDEFGAELLDGGPWMQFKNPKTGKNVVVKDVIADAML
QQILLRPAEYDVIATLNLNGDYLSDALAAEVGGIGIAPGANLSDSVAMFEATHGTAPKYAGQDKVNPGSLIL
SAEMMLRHMGWTEAADLIIKGTNGAIAAKTVTYDFERLMDGATLLSCSEFGDAMIAKM*
AnnotationID:1324GeneID:1315
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:29
Gene Name:icd
Confidence Code:2
GeneProduct:isocitrate dehydrogenase
Cell Localization:()
Synonyms:icdA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:isocitrate dehydrogenase, specific for NADP+
Functional Category Confidence Code:5
COGs:COG0538,pfam00180
Secondary Functional Category(ies):carbon compond metabolism
EC Number:1.1.1.42
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69605.1|AE016594_2 (AE016788) isocitrate dehydrogenase, NADP-dependent,
           prokaryotic-type [Pseudomonas putida KT2440]
          Length = 418

 Score =  761 bits (1964), Expect = 0.0
 Identities = 375/418 (89%), Positives = 396/418 (94%)

>gb|AAM85370.1|AE013782_11 (AE013782) isocitrate dehydrogenase, specific for NADP+ [Yersinia
           pestis KIM]
          Length = 434

 Score =  684 bits (1764), Expect = 0.0
 Identities = 329/414 (79%), Positives = 367/414 (88%)

>dbj|BAB35031.1| (AP002555) isocitrate dehydrogenase [Escherichia coli O157:H7]
          Length = 416

 Score =  679 bits (1753), Expect = 0.0
 Identities = 327/414 (78%), Positives = 370/414 (89%), Gaps = 1/414 (0%)

Structural Features:
COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion]
CD-Length = 407 residues,  99.3% aligned
Score =  618 bits (1595), Expect = 4e-178
Identities = 275/409 (67%), Positives = 315/409 (77%), Gaps = 7/409 (1%)

pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase.
CD-Length = 350 residues,  99.7% aligned
Score =  317 bits (814), Expect = 1e-87
Identities = 128/394 (32%), Positives = 181/394 (45%), Gaps = 55/394 (13%)
Genomic Context:
Comment:
ReferenceID:2633
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19776
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33187
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1315_cdd.html
URL:
ReferenceID:34561
Author/Investigator(s): Wang FS, Whittam TS, Selander RK.
Title: Evolutionary genetics of the isocitrate dehydrogenase gene (icd) in Escherichia coli and Salmonella enterica.
PubMed: 9352899
MedLine:
Source:
J Bacteriol. 1997 Nov;179(21):6551-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9352899
ReferenceID:34562
Author/Investigator(s): Eikmanns BJ, Rittmann D, Sahm H.
Title: Cloning, sequence analysis, expression, and inactivation of the Corynebacterium glutamicum icd gene encoding isocitrate dehydrogenase and biochemical characterization of the enzyme.
PubMed: 7836312
MedLine:
Source:
J Bacteriol. 1995 Feb;177(3):774-82.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7836312
ReferenceID:34563
Author/Investigator(s): Muro-Pastor MI, Florencio FJ.
Title: NADP(+)-isocitrate dehydrogenase from the cyanobacterium Anabaena sp. strain PCC 7120: purification and characterization of the enzyme and cloning, sequencing, and disruption of the icd gene.
PubMed: 8169222
MedLine:
Source:
J Bacteriol. 1994 May;176(9):2718-26.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8169222
ReferenceID:34564
Author/Investigator(s): Riedel HD, Heinrich J, Schuster H.
Title: Cloning, expression, and characterization of the icd gene in the immI operon of bacteriophage P1.
PubMed: 8491703
MedLine:
Source:
J Bacteriol. 1993 May;175(10):2833-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8491703
Homologs By Global Alignment
Gene ID:1315

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2400 PA2623_tr translation of PA2623 418 99.99 99.99 0 2159.0
76518 gb|AAG06011.1|AE004691_2 (AE004691) isocitrate dehydrogenase [Pseudomonas aeruginosa PAO1] 418 99.99 99.99 0 2159.0
76519 gb|AAN69605.1|AE016594_2 (AE016788) isocitrate dehydrogenase, NADP-dependent, prokaryotic-type [Pseudomonas putida KT2440] 418 89.71 94.73 0 1964.0
76523 emb|CAD08362.1| (AL627269) isocitrate dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi] 418 79.18 88.27 2 1758.0
76522 gb|AAO69307.1| (AE016839) isocitrate dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi Ty2] 418 79.18 88.27 2 1758.0
GC ORFID: 44317How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2623Glimmer Score:
Start: 2338818Stop: 2337562
Length: 1257
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2623 translation of PA2623Homolog Bit Score 836.0
Other Homologs: t_PA2623 (ORF: GLIMMER)
GC ORF Sequence
ATGGGATACCAAAAGATCCAGGTGCCGGCGACCGGTGACAAAATCACTGTGAATGCCGACATGTCCTTGAGC
GTACCGAAGAACCCGATCATCCCGTTCATCGAGGGTGATGGCATCGGCGTCGATATCAGCCCGGTCATGATC
AAGGTTGTCGACGCTGCAGTGGAAAAAGCATACAAGGGCGAGCGCAAGATCGCCTGGATGGAAGTCTACGCC
GGCGAGAAGGCCACCCAGGTGTATGACCAGGACACCTGGCTGCCCCAGGAAACCCTGGACGCCGTGCGCGAC
TACGTGGTTTCCATCAAGGGTCCGCTGACCACCCCGGTCGGTGGCGGCATCCGTTCCCTGAACGTGGCCCTG
CGCCAGCAACTCGATCTCTACGTCTGCCAGCGCCCGGTACGCTGGTTCGAAGGCGTGCCCAGCCCGGTGAAG
AAGCCCGGCGACGTAGACATGGTGATCTTCCGCGAGAACTCCGAGGACATCTATGCCGGCGTCGAGTGGAAG
GCCGGTTCGCCGGAGGCGGAGAAGGTCATCAAGTTCCTCACCGAGGAAATGGGCGTCAAGAAAATCCGCTTC
ACCGAGAACTGCGGCATCGGCATCAAGCCGGTTTCCCAGGAAGGCACCAAGCGCCTGGTGCGCAAGGCCCTG
CAATACGCCGTCGACAACGACCGCAGTTCGGTGACCCTGGTGCACAAGGGCAACATCATGAAGTTCACCGAG
GGTGCCTTCAAGGATTGGGGTTACGAAGTCGCGCGCGATGAATTCGGCGCCGAGCTGCTGGACGGCGGTCCG
TGGATGCAGTTCAAGAACCCGAAGACCGGCAAGAACGTCGTGGTCAAGGACGTGATCGCCGACGCCATGTTG
CAGCAGATTCTGCTGCGCCCCGCCGAGTACGACGTGATCGCCACCCTGAACCTGAACGGCGACTATCTCTCC
GACGCCCTGGCGGCCGAGGTCGGCGGCATCGGCATCGCGCCCGGCGCCAACCTGTCCGATTCGGTGGCCATG
TTCGAGGCGACCCACGGCACCGCGCCGAAGTACGCCGGCCAGGACAAGGTCAACCCGGGTTCGCTGATCCTC
TCCGCGGAGATGATGCTGCGCCACATGGGCTGGACCGAGGCGGCCGACCTGATCATCAAGGGCACCAACGGG
GCGATCGCCGCCAAGACCGTGACCTATGACTTCGAACGCCTGATGGACGGCGCGACCCTGCTGTCCTGCTCG
GAGTTCGGCGACGCGATGATCGCCAAGATGTAG