ViewGene
Locus Name:
GeneID:
Location:

GeneID:1314
TrivialName: PA14_37250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37250
PAO1 Ortholog Locus:PA2114
Sequence Length:1272
Protein Length:423
Start: 3317016
Stop: 3318287
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05502.1|AE004638_12 (AE004638) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 421/423 (99%), Positives = 421/423 (99%)
Sequence:
ATGACCCTCGACGCCGGCCCGGACGCTTCCCGGGACGGTCATTTCGGCTGGTATCGCGCCCTCGACAAGCAG
GAACGCCGGGCCTTCTGGAGCTGCAAGATCGGCTACGGCCTGGACGGCATGGACACCCAGATGCTGAGCTTC
GTGATCCCCACCCTGATCGCCCTGTGGGGGATCAGCACCGGCGAAGCCGGCTTCATCCACACCATGACCCTG
CTCGCCTCCGCCGCCGGCGGCTGGATCGCCGGGATCCTCTCCGACCGCATCGGCCGGGTGCTGACCCTGCAA
CTGACGGTGCTCTGGTTCGCCTTCTTCACCTTCCTCTGCGGCCTCGCGCAGAACTACGAGCAGTTGCTGGTC
GCGCGGACCCTGATGGGCTTCGGCTTCGGTGGCGAATGGACCGCCGGCGCGGTACTCATCGGCGAAGTGATC
AAGGCCCGCGACCGCGGCAAGGCGGTCGGCCTGGTGCAGTCCGGCTGGGCCATCGGCTGGGGCCTCACCGCC
ATCCTCTACTCGCTGATGTTCAGCCTGCTGCCGCCGGAGGAGGCCTGGCGCGCGCTGTTCATGCTCGGCCTG
TTGCCGGCACTGTTCGTCCTGGTGGTGCGTCGGCTGGTCAAGGAACCGGCGATCTACCGCGAGGCCAGGCAG
CGCAACCAGGGCGCCGACAAGGTCAGCTTCTACGAGATCTTCGCCCCCGGGATGCTCAGCATCACCCTGCGC
GCCTCGCTGCTGACCACCGGCGCCCTCGGCGGCTACTACGCCATCACCGCCTGGCTGCCGACCTTCCTCAAG
ACCGAGCGCGGGCTGACCGTGCTCGGCACCAGCGGCTACCTGGCGATGGTGATCCTCGGCTCCTACGTCGGC
TACGTGGTCAGTGCCTTCCTCACCGACCTGATCGGGCGCAAGAAGAACTTCGTCCTGTTCGCCGTCGGCTCC
TTCACCGTGGTCCTGCTCTACACCCAGTTGCCGGTAAGCAACGGCGCCATGCTCTGGCTCGGCTTCCCGCTC
GGCTTCTTCGCCTCGGGCATCTTCAGCGGCATGGGCTCGTTCCTCACCGAACTGTTCCCGACCCGCATCCGC
GGCTCCGGCCAGGGCTTCTGCTACAACGCCGGGCGCGCCATCGCCGCGCTGTTCCCGATGCTGATCGGCATG
CTCGGCCAGAAGCTCTCGCTGGGCCTGGGGATCGGCGCCTTCGCCGCGGTCTCCTACGGCGTGGTGATCCTC
GCCGCCCTCAGCCTGCCGGAAACCCGCGGCAAACAACTGGAACTCTGA
Translation:
MTLDAGPDASRDGHFGWYRALDKQERRAFWSCKIGYGLDGMDTQMLSFVIPTLIALWGISTGEAGFIHTMTL
LASAAGGWIAGILSDRIGRVLTLQLTVLWFAFFTFLCGLAQNYEQLLVARTLMGFGFGGEWTAGAVLIGEVI
KARDRGKAVGLVQSGWAIGWGLTAILYSLMFSLLPPEEAWRALFMLGLLPALFVLVVRRLVKEPAIYREARQ
RNQGADKVSFYEIFAPGMLSITLRASLLTTGALGGYYAITAWLPTFLKTERGLTVLGTSGYLAMVILGSYVG
YVVSAFLTDLIGRKKNFVLFAVGSFTVVLLYTQLPVSNGAMLWLGFPLGFFASGIFSGMGSFLTELFPTRIR
GSGQGFCYNAGRAIAALFPMLIGMLGQKLSLGLGIGAFAAVSYGVVILAALSLPETRGKQLEL*
AnnotationID:1323GeneID:1314
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 08:08:35
Gene Name:
Confidence Code:3
GeneProduct:putative major facilitator family transporter
Cell Localization:()
Synonyms:PA2114
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative sugar transporter
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70151.1|AE016654_8 (AE016791) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 428

 Score =  692 bits (1785), Expect = 0.0
 Identities = 332/410 (80%), Positives = 373/410 (90%)

>gb|AAM85937.1|AE013841_2 (AE013841) putative major facilitator superfamily (MFS) transport
           protein (permease) [Yersinia pestis KIM]
          Length = 425

 Score =  471 bits (1211), Expect = e-132
 Identities = 228/407 (56%), Positives = 298/407 (73%), Gaps = 1/407 (0%)

>emb|CAD17385.1| (AL646077) PROBABLE METABOLITE TRANSPORT TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 416

 Score =  441 bits (1135), Expect = e-123
 Identities = 213/410 (51%), Positives = 284/410 (69%), Gaps = 3/410 (0%)






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter
CD-Length = 448 residues,  89.3% aligned
Score =  118 bits (297), Expect = 1e-27
Identities = 96/404 (23%), Positives = 151/404 (37%), Gaps = 44/404 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2631




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19774




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32603




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1314_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1314
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2399
                           PA2114_tr
                           translation of PA2114
                           423
                           99.52
                           99.52
                           0
                           2160.0
     

     
     
76504
                           gb|AAG05502.1|AE004638_12
                           (AE004638) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           423
                           99.52
                           99.52
                           0
                           2160.0
     

     
     
76505
                           gb|AAN70151.1|AE016654_8
                           (AE016791) major facilitator family transporter [Pseudomonas putida KT2440]
                           434
                           76.95
                           86.63
                           17
                           1779.0
     

     
     
76506
                           emb|CAE26522.1|
                           (BX572596) probable 4-methylmuconolactone Major Facilitator Family (MFS) transporter [Rhodopseudomonas palustris CGA009]
                           432
                           54.86
                           69.21
                           13
                           1215.0
     

     
     
76510
                           emb|CAC90747.1|
                           (AJ414150) putative sugar transporter [Yersinia pestis CO92]
                           424
                           53.77
                           70.28
                           16
                           1211.0
     

     






      

          
GC ORFID: 44316How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2114Glimmer Score: 

          
Start: 1636898Stop: 1635627

          
Length: 1272


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2114 translation of PA2114Homolog Bit Score 836.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1779 (ORF: BLASTX 436.0), t_PA2114 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCTCGACGCCGGCCCGGACGCTTCCCGGGACGGTCATTTCGGCTGGTATCGCGCCCTCGACAAGCAG 
GAACGCCGGGCCTTCTGGAGCTGCAAGATCGGCTACGGCCTGGACGGCATGGACACCCAGATGCTGAGCTTC 
GTGATCCCCACCCTGATCGCCCTGTGGGGGATCAGCACCGGCGAAGCCGGCTTCATCCACACCATGACCCTG 
CTCGCCTCCGCCGCCGGCGGCTGGATCGCCGGGATCCTCTCCGACCGCATCGGCCGGGTGCTGACCCTGCAA 
CTGACGGTGCTCTGGTTCGCCTTCTTCACCTTCCTCTGCGGCCTCGCGCAGAACTACGAGCAGTTGCTGGTC 
GCGCGGACCCTGATGGGCTTCGGCTTCGGTGGCGAATGGACCGCCGGCGCGGTACTCATCGGCGAAGTGATC 
AAGGCCCGCGACCGCGGCAAGGCGGTCGGCCTGGTGCAGTCCGGCTGGGCCATCGGCTGGGGCCTCACCGCC 
ATCCTCTACTCGCTGATGTTCAGCCTGCTGCCGCCGGAGGAGGCCTGGCGCGCGCTGTTCATGCTCGGCCTG 
TTGCCGGCACTGTTCGTCCTGGTGGTGCGTCGGCTGGTCAAGGAACCGGCGATCTACCGCGAGGCCAGGCAG 
CGCAACCAGGGCGCCGACAAGGTCAGCTTCTACGAGATCTTCGCCCCCGGGATGCTCAGCATCACCCTGCGC 
GCCTCGCTGCTGACCACCGGCGCCCTCGGCGGCTACTACGCCATCACCGCCTGGCTGCCGACCTTCCTCAAG 
ACCGAGCGCGGGCTGACCGTGCTCGGCACCAGCGGCTACCTGGCGATGGTGATCCTCGGCTCCTACGTCGGC 
TACGTGGTCAGTGCCTTCCTCACCGACCTGATCGGGCGCAAGAAGAACTTCGTCCTGTTCGCCGTCGGCTCC 
TTCACCGTGGTCCTGCTCTACACCCAGTTGCCGGTAAGCAACGGCGCCATGCTCTGGCTCGGCTTCCCGCTC 
GGCTTCTTCGCCTCGGGCATCTTCAGCGGCATGGGCTCGTTCCTCACCGAACTGTTCCCGACCCGCATCCGC 
GGCTCCGGCCAGGGCTTCTGCTACAACGCCGGGCGCGCCATCGCCGCGCTGTTCCCGATGCTGATCGGCATG 
CTCGGCCAGAAGCTCTCGCTGGGCCTGGGGATCGGCGCCTTCGCCGCGGTCTCCTACGGCGTGGTGATCCTC 
GCCGCCCTCAGCCTGCCGGAAACCCGCGGCAAACAACTGGAACTCTGA