ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1313

TrivialName: PA14_51070

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_51070

PAO1 Ortholog Locus: PA1025

Sequence Length: 1251

Protein Length: 416

Start: 4538984

Stop: 4537734

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG04414.1|AE004535_1 (AE004535) probable porin [Pseudomonas aeruginosa PAO1] Identities = 411/416 (98%), Positives = 414/416 (99%)

Sequence:

ATGAAAATTCTTCCCGTTCCGATGCTGGCCGCGGGGCTGGTGTTGCTGCCGTCGTTCGCCCAGGCGGAGTTT
TTCGCCGACGGCAAGGCCGGCCTCGAACTGCGCAATTTCTATTTCAATCGCGACTATCGCCAGCCCGGCGCC
AGCCAGTCCTATTCGGAGGAGTGGGCGCAGGGTTTCCTGTTGCGCTACGAGTCCGGCTACACCGAGGGGCTC
TTCGGCCTGGGCGTCGATGCGCTGGGCCTGCTGGGCGTCAGGCTGGACTCCTCGCCAGAGCGATCCGGTAGT
GGTCTGTTGCCGTATTCGACGAGCCACCGGCGCGCCGCCCACGACTATTCCAGCCTGGGCCTGACCGCCAAG
CTACGGGTCTCGCACAGTACGCTGAAGATCGGCAGCCTGATGCCCAGGCTGCCGGTGGTGCAGTTCAACGAC
ACGCGCCTGCACCCGCAAACCTTCCAGGGTGGACTGCTGGAAGTGAACGAGATCGACGGGCTGGCGCTGCAG
TTCGGCCAGTTGCGCCAGGTCAAGCAGCGCGACTCGACCAACGCCGAAGACCTCGGCATCACCCGCGGCAAC
AAGCGCAACGTACTGGCGGGCCGGCACCCCGGCAGCGACCGCTTCGACTTCGCCGGCGGTACCTACCGCTGG
AGCGAGCGCCTGAGCAGCAGCTACCACTACGCCAACCTGGAGGATTTCTACCGCCAGCATTATCTCGGCGTG
CAGCACCTCTTGCCGCTCGCCGATGACCAGTCGCTGAAGTCCGACATCCGCTGGGCGCGTTCCACCGACGAG
GGCGGCAGCCGCGTCGACAATCGCGCGCTGAATGCGCTGTTCACCTATCGCCTGGGCGGCCACGCCTTCGGC
CTCGGCTACCAGCGCATGTCCGGCGACAGCGGCTTCGCCTACCTGGCCGGGACCGATCCGTATCTGGTCAAC
TTCGTGCAGATCGGCGATTTCGCCAACAAGGACGAGCGCTCCTGGCAGTTGCGCTACGACTACGACTTCGCC
GCCATCGGCCTGCCCGGCCTGACATTCATGAGCCGCTACCTGCGTGGCGAACACATCGACCTTCTGGACGGC
GGTGGGCGCGGCAAGGAATGGGAGCGGGACACCGATATCGCCTACCTGGTGCAATCGGGGCCGTTGAAGAAC
CTGGGGATCAAGTTGCGCAACGGCACCTTCCGCAGCGATTTCGGCAACGACATCGACGAGACCCGGCTGATC
GTCAGCTACGCGTTGCCGCTGTGGTGA

Translation:

MKILPVPMLAAGLVLLPSFAQAEFFADGKAGLELRNFYFNRDYRQPGASQSYSEEWAQGFLLRYESGYTEGL
FGLGVDALGLLGVRLDSSPERSGSGLLPYSTSHRRAAHDYSSLGLTAKLRVSHSTLKIGSLMPRLPVVQFND
TRLHPQTFQGGLLEVNEIDGLALQFGQLRQVKQRDSTNAEDLGITRGNKRNVLAGRHPGSDRFDFAGGTYRW
SERLSSSYHYANLEDFYRQHYLGVQHLLPLADDQSLKSDIRWARSTDEGGSRVDNRALNALFTYRLGGHAFG
LGYQRMSGDSGFAYLAGTDPYLVNFVQIGDFANKDERSWQLRYDYDFAAIGLPGLTFMSRYLRGEHIDLLDG
GGRGKEWERDTDIAYLVQSGPLKNLGIKLRNGTFRSDFGNDIDETRLIVSYALPLW*

AnnotationID:1322 GeneID:1313

AnnotatorUID: danlee

Modification Date/Time: 2004-05-18 17:05:29

Gene Name:

Confidence Code: 3

GeneProduct: probable porin

Cell Localization: (6) Outer membrane protein

Synonyms: PA1025, opdD

Cell Localization Confidence Code: 2

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: pfam03573

Secondary Functional Category(ies): Membrane proteins

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

pfam03573, OprD, outer membrane porin, OprD family. 
       CD-Length = 449 residues,  92.2% aligned
       Score =  285 bits (730), Expect = 6e-78

Genomic Context:

Comment:

ReferenceID:2629

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19772

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1313

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2388 PA1025_tr translation of PA1025 416 98.79 99.51 0 2159.0

76470 gb|AAG04414.1|AE004535_1 (AE004535) probable porin [Pseudomonas aeruginosa PAO1] 416 98.79 99.51 0 2159.0

76471 gb|AAG06426.1|AE004728_12 (AE004728) probable porin [Pseudomonas aeruginosa PAO1] 421 65.32 79.09 5 1491.0

2389 PA3038_tr translation of PA3038 421 65.32 79.09 5 1491.0

2390 PA2113_tr translation of PA2113 422 54.73 69.43 19 1151.0

GC ORFID: `44315`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1025`	Glimmer Score:
Start: `414924`	Stop: `416174`
Length: `1251`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1025 translation of PA1025`	Homolog Bit Score `836.0`
Other Homologs: `t_PA3038 (ORF: BLASTX 578.0), t_PA2113 (ORF: BLASTX 442.0), t_PA0755 (ORF: BLASTX 440.0), t_PA4137 (ORF: BLASTX 406.0), t_PA3588 (ORF: BLASTX 395.0), t_PA2213 (ORF: BLASTX 381.0), t_PA4179 (ORF: BLASTX 335.0), t_PA0291 (ORF: BLASTX 323.0), psyr_15may02_Scaffold1_revised_gene1320 (ORF: BLASTX 305.0), t_PA4898 (ORF: BLASTX 304.0), t_PA0240 (ORF: BLASTX 297.0), psyr_15may02_Scaffold1_revised_gene342 (ORF: BLASTX 293.0), t_PA1025 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAAATTCTTCCCGTTCCGATGCTGGCCGCGGGGCTGGTGTTGCTGCCGTCGTTCGCCCAGGCGGAGTTT TTCGCCGACGGCAAGGCCGGCCTCGAACTGCGCAATTTCTATTTCAATCGCGACTATCGCCAGCCCGGCGCC AGCCAGTCCTATTCGGAGGAGTGGGCGCAGGGTTTCCTGTTGCGCTACGAGTCCGGCTACACCGAGGGGCTC TTCGGCCTGGGCGTCGATGCGCTGGGCCTGCTGGGCGTCAGGCTGGACTCCTCGCCAGAGCGATCCGGTAGT GGTCTGTTGCCGTATTCGACGAGCCACCGGCGCGCCGCCCACGACTATTCCAGCCTGGGCCTGACCGCCAAG CTACGGGTCTCGCACAGTACGCTGAAGATCGGCAGCCTGATGCCCAGGCTGCCGGTGGTGCAGTTCAACGAC ACGCGCCTGCACCCGCAAACCTTCCAGGGTGGACTGCTGGAAGTGAACGAGATCGACGGGCTGGCGCTGCAG TTCGGCCAGTTGCGCCAGGTCAAGCAGCGCGACTCGACCAACGCCGAAGACCTCGGCATCACCCGCGGCAAC AAGCGCAACGTACTGGCGGGCCGGCACCCCGGCAGCGACCGCTTCGACTTCGCCGGCGGTACCTACCGCTGG AGCGAGCGCCTGAGCAGCAGCTACCACTACGCCAACCTGGAGGATTTCTACCGCCAGCATTATCTCGGCGTG CAGCACCTCTTGCCGCTCGCCGATGACCAGTCGCTGAAGTCCGACATCCGCTGGGCGCGTTCCACCGACGAG GGCGGCAGCCGCGTCGACAATCGCGCGCTGAATGCGCTGTTCACCTATCGCCTGGGCGGCCACGCCTTCGGC CTCGGCTACCAGCGCATGTCCGGCGACAGCGGCTTCGCCTACCTGGCCGGGACCGATCCGTATCTGGTCAAC TTCGTGCAGATCGGCGATTTCGCCAACAAGGACGAGCGCTCCTGGCAGTTGCGCTACGACTACGACTTCGCC GCCATCGGCCTGCCCGGCCTGACATTCATGAGCCGCTACCTGCGTGGCGAACACATCGACCTTCTGGACGGC GGTGGGCGCGGCAAGGAATGGGAGCGGGACACCGATATCGCCTACCTGGTGCAATCGGGGCCGTTGAAGAAC CTGGGGATCAAGTTGCGCAACGGCACCTTCCGCAGCGATTTCGGCAACGACATCGACGAGACCCGGCTGATC GTCAGCTACGCGTTGCCGCTGTGGTGA