ViewGene

Locus Name:
GeneID:
Location:

GeneID:1312
TrivialName: PA14_72170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72170
PAO1 Ortholog Locus:PA5468
Sequence Length:1305
Protein Length:434
Start: 6429771
Stop: 6431075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08853.1|AE004959_9 (AE004959) probable citrate transporter [Pseudomonas aeruginosa PAO1]
Identities = 433/434 (99%), Positives = 434/434 (100%)
Sequence:
ATGCTGACCCTGCTCGCCTTCGCCATGGTGGCGACCTTCATGTTCCTGATCATGACCAAGCGCCTGTCCGCG
CTGATCGCGCTGATCCTGGTCCCGATCGCCTTCGCCCTGATCGGCGGTTTCGCCGCCGGCCTCGGCCCGATG
ATGCTCGACGGCATCCGCACCCTGGCGCCGACCGGGGTGATGCTGATGTTCGCGATCCTCTACTTCGCCATC
ATGATCGACTCCGGGCTGTTCGACCCGGCGGTGCGCAAGATCCTCCGGCTGGTCAAGGGCGACCCGCTGAAG
GTCTCGCTGGGCACCGCGGCGCTGGCGATGATCGTCTCCCTCGACGGCGACGGCTCGACCACCTACATGATC
TGCGTGGCCGCCGTGCTGCCGTTGTACAGCCGCCTGGGCATGAGCCCGCTGGTGATGGCCTGCCTGATCATG
CTCTCCAGCGGCGTGCTCAACATGACCCCCTGGGGCGGCCCGACCGCACGCGCGGCGAGCGCCCTGCACGTC
GACCCGGCGGATATCTTCGTGCCGATGATCCCGGCGATGATCGCCGGGCTGCTGGCGATCTTCGCCATCGCC
TGGATCTACGGCAAGCGCGAGCGCGCCCGCCTCGGCGAGCTGCACCTGCCCACCGACCACGAGGACCTGGCG
GAGATCAGCGTGTCGCAGTATCCGGAGGCGCGCCGGCCCAGGCTGCTGTGGTTCAACGCCATTCTCACCGTG
GTCCTGATGGCGACCCTGATCGCCGGCCTGCTGCCGATGCCGGTGCTGTTCATGATCGCCTTCGGCATCGCC
ATGATCGTCAACTACCCGTGCATCCAGGAGCAGAAGAAGCGCATCGGCGCACACGCCGAGAACATTCTCGCG
GTGGTCTCGCTGATCTTCGCCGCCGGGGTGTTCACCGGCATCCTCTCCGGCACCGGGATGGTCGACGCCATG
TCCAAGAGCCTGCTGGCGGTGATCCCGCCGGCGCTGGGCCCATACCTGGCGACCATCACCGCGCTGGTGAGC
ATGCCGTTCACCTTCTTCATGTCCAACGACGCCTTCTACTACGGCGTCCTGCCGATCCTCACCCAGGCCGCC
GCCGAATACGGCATCACCCCGGTGGAAATGGCCCGCGCCTCGATCGTCGGCCAGCCGGTGCACCTGCTCAGC
CCGCTGGTGCCCTCCACCTACCTGCTGGTGGGGCTGGCCAAGATCGACTTCGGCGACCACCAGCGCTTCACC
CTGAAATGGGCCGTGCTGGTGTGCCTGGCAATCCTCGCCATGGCCCTGCTGCTGGGCCTGTTCCCCCTGTTC
AGTAACTGA
Translation:
MLTLLAFAMVATFMFLIMTKRLSALIALILVPIAFALIGGFAAGLGPMMLDGIRTLAPTGVMLMFAILYFAI
MIDSGLFDPAVRKILRLVKGDPLKVSLGTAALAMIVSLDGDGSTTYMICVAAVLPLYSRLGMSPLVMACLIM
LSSGVLNMTPWGGPTARAASALHVDPADIFVPMIPAMIAGLLAIFAIAWIYGKRERARLGELHLPTDHEDLA
EISVSQYPEARRPRLLWFNAILTVVLMATLIAGLLPMPVLFMIAFGIAMIVNYPCIQEQKKRIGAHAENILA
VVSLIFAAGVFTGILSGTGMVDAMSKSLLAVIPPALGPYLATITALVSMPFTFFMSNDAFYYGVLPILTQAA
AEYGITPVEMARASIVGQPVHLLSPLVPSTYLLVGLAKIDFGDHQRFTLKWAVLVCLAILAMALLLGLFPLF
SN*
AnnotationID:1321GeneID:1312
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 06:06:59
Gene Name:
Confidence Code:3
GeneProduct:putative citrate transporter
Cell Localization:()
Synonyms:citM
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03600,COG2851
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65781.1|AE016204_4 (AE016774) citrate transporter [Pseudomonas putida KT2440]
          Length = 435

 Score =  706 bits (1821), Expect = 0.0
 Identities = 354/434 (81%), Positives = 395/434 (91%)

>gb|AAO53616.1| (AE016856) citrate transporter [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 435

 Score =  686 bits (1771), Expect = 0.0
 Identities = 341/434 (78%), Positives = 391/434 (90%)

>gb|AAM42624.1| (AE012454) Mg++ citrate complex transporter [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 442

 Score =  604 bits (1557), Expect = e-172
 Identities = 298/440 (67%), Positives = 359/440 (81%), Gaps = 9/440 (2%)

Structural Features:
pfam03600, CitMHS, Citrate transporter.
CD-Length = 434 residues, 100.0% aligned
Score =  543 bits (1400), Expect = 2e-155
Identities = 295/434 (67%), Positives = 361/434 (83%), Gaps = 5/434 (1%)

COG2851, CitM, H+/citrate symporter [Energy production and conversion]
CD-Length = 433 residues, 100.0% aligned
Score =  538 bits (1387), Expect = 6e-154
Identities = 281/433 (64%), Positives = 352/433 (81%), Gaps = 1/433 (0%)
Genomic Context:
Comment:
ReferenceID:2627
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19770
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34632
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1312_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1312

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2387 PA5468_tr translation of PA5468 434 99.76 99.99 0 2161.0
76442 gb|AAG08853.1|AE004959_9 (AE004959) probable citrate transporter [Pseudomonas aeruginosa PAO1] 434 99.76 99.99 0 2161.0
76443 gb|AAN65781.1|AE016204_4 (AE016774) citrate transporter [Pseudomonas putida KT2440] 435 81.37 90.80 1 1821.0
76444 gb|AAO53616.1| (AE016856) citrate transporter [Pseudomonas syringae pv. tomato str. DC3000] 435 78.39 89.88 1 1771.0
76445 gb|AAM42624.1| (AE012454) Mg++ citrate complex transporter [Xanthomonas campestris pv. campestris str. ATCC 33913] 445 66.74 81.34 14 1562.0
GC ORFID: 44314How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5468Glimmer Score:
Start: 5693460Stop: 5694764
Length: 1305
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5468 translation of PA5468Homolog Bit Score 837.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3952 (ORF: BLASTX 689.0), t_PA5468 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGACCCTGCTCGCCTTCGCCATGGTGGCGACCTTCATGTTCCTGATCATGACCAAGCGCCTGTCCGCG
CTGATCGCGCTGATCCTGGTCCCGATCGCCTTCGCCCTGATCGGCGGTTTCGCCGCCGGCCTCGGCCCGATG
ATGCTCGACGGCATCCGCACCCTGGCGCCGACCGGGGTGATGCTGATGTTCGCGATCCTCTACTTCGCCATC
ATGATCGACTCCGGGCTGTTCGACCCGGCGGTGCGCAAGATCCTCCGGCTGGTCAAGGGCGACCCGCTGAAG
GTCTCGCTGGGCACCGCGGCGCTGGCGATGATCGTCTCCCTCGACGGCGACGGCTCGACCACCTACATGATC
TGCGTGGCCGCCGTGCTGCCGTTGTACAGCCGCCTGGGCATGAGCCCGCTGGTGATGGCCTGCCTGATCATG
CTCTCCAGCGGCGTGCTCAACATGACCCCCTGGGGCGGCCCGACCGCACGCGCGGCGAGCGCCCTGCACGTC
GACCCGGCGGATATCTTCGTGCCGATGATCCCGGCGATGATCGCCGGGCTGCTGGCGATCTTCGCCATCGCC
TGGATCTACGGCAAGCGCGAGCGCGCCCGCCTCGGCGAGCTGCACCTGCCCACCGACCACGAGGACCTGGCG
GAGATCAGCGTGTCGCAGTATCCGGAGGCGCGCCGGCCCAGGCTGCTGTGGTTCAACGCCATTCTCACCGTG
GTCCTGATGGCGACCCTGATCGCCGGCCTGCTGCCGATGCCGGTGCTGTTCATGATCGCCTTCGGCATCGCC
ATGATCGTCAACTACCCGTGCATCCAGGAGCAGAAGAAGCGCATCGGCGCACACGCCGAGAACATTCTCGCG
GTGGTCTCGCTGATCTTCGCCGCCGGGGTGTTCACCGGCATCCTCTCCGGCACCGGGATGGTCGACGCCATG
TCCAAGAGCCTGCTGGCGGTGATCCCGCCGGCGCTGGGCCCATACCTGGCGACCATCACCGCGCTGGTGAGC
ATGCCGTTCACCTTCTTCATGTCCAACGACGCCTTCTACTACGGCGTCCTGCCGATCCTCACCCAGGCCGCC
GCCGAATACGGCATCACCCCGGTGGAAATGGCCCGCGCCTCGATCGTCGGCCAGCCGGTGCACCTGCTCAGC
CCGCTGGTGCCCTCCACCTACCTGCTGGTGGGGCTGGCCAAGATCGACTTCGGCGACCACCAGCGCTTCACC
CTGAAATGGGCCGTGCTGGTGTGCCTGGCAATCCTCGCCATGGCCCTGCTGCTGGGCCTGTTCCCCCTGTTC
AGTAACTGA