ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1311

TrivialName: PA14_56140

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_56140

PAO1 Ortholog Locus: PA4321

Sequence Length: 1278

Protein Length: 425

Start: 5013478

Stop: 5014755

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07709.1|AE004848_8 (AE004848) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 421/425 (99%), Positives = 422/425 (99%), Gaps = 2/425 (0%)

Sequence:

ATGATGAGCCGGCGCGCGCGCTTCCTGTTGCTTGCCGTGCTCCTGCTGCTGGCCGGGCTGCTGGCGATCTTC
CTGGCCAGCCGCCTGCAACCCTATACGGAGACGATCGACCTCGGCCCATCGCCGGAGGCCCGGCGCAATCCC
TACCTGGCCGCCGAACTGTTCCTGCGCAAGCAGGGGGTCACGGTGAGCCGCGCCGACGGCCTTGAGGTCCTC
AAGGAACTGCCGCCCTCCGGGCATACCCTGCTCCTGCTCGGCAGCCGCTCCGGCATGACTCCCGGCCAGGCG
CGCCGCCTGCTGCAATGGAGCGAGCAGGGCGGGCACCTGGTGCTGATCGCCGAACGCCTGTGGGACGAGGAC
GAGAAGAAGAGCGGCGACCTGCTGCTCGACAGCCTGGATATCCGCCAGTACCTGACCGAGGACTTCGACGAC
AGCCAGGACCGGGCCAGCGAGGAAACCGCCGACGCCGACGCCGACGCCGACGAAGGTAGCGTCGACGACCAT
GCGACCGAAGCGCCGCCGGAGGAAGCCGCCGGCGAGgAAGAAGAGCCCGCCGACAGCGTGCCGGACTATTCC
GCACTGACCCGCCTGTACCTGGAAAACGAGCGCTCGCCGGCCTACATCGGCTTCGATCCCGACTACCACCTC
TACGATCCGCAGAACCACGCCTACGCCTGGGCCAACAGCGGCGACGCCACCCACCTGTTGCAGATGCAGCAC
GGCAAGGGCCTGGTCACGGTGCTCACCGACGCCTGGATCTGGCAGAACCGCAACATCGAGCAGTACGACAAC
GCCTGGCTGCTCTGGTACCTGACCCAGGACAACCAGGTGACCCTGCTCTACCGCGCCGAACGCGACAGCCTC
GCCACCCTGCTCGCCCGCCACTTCCCCGAGGCCCTGGCGGCAGCGCTGCTGCTGTTGCTCGCTGGCCTGTGG
CGCGCAGGGCTGCGCCAGGGTCCCTTGCAGCCGGTGGCCAGCCGTTCGCGCCGGCAACTGGAGGAACACCTG
CGCGCCGGCGCCGACTTCCTCCTCCGCCAGCGCGGCCACGTCGCCTTGCTGCACGGTCTGCAACGCGACATC
CTGCGCAGGGCGCGGCGTCGCCACCCCGGTTTCGAACAGCTCGGCGTCGCCGAGCAATGGCAGATCCTCGGG
CGCATGACCCGCCTGCCACCCAGCGCCATCAGCCAGGCCATGCGCCCATATCCGGCGCAGCGCCTTTCCGCT
GCCGACTTCACCCGCCAGGTCGCCCACCTGCAAAGCCTCAGGAATGCCCTATGA

Translation:

MMSRRARFLLLAVLLLLAGLLAIFLASRLQPYTETIDLGPSPEARRNPYLAAELFLRKQGVTVSRADGLEVL
KELPPSGHTLLLLGSRSGMTPGQARRLLQWSEQGGHLVLIAERLWDEDEKKSGDLLLDSLDIRQYLTEDFDD
SQDRASEETADADADADEGSVDDHATEAPPEEAAGEEEEPADSVPDYSALTRLYLENERSPAYIGFDPDYHL
YDPQNHAYAWANSGDATHLLQMQHGKGLVTVLTDAWIWQNRNIEQYDNAWLLWYLTQDNQVTLLYRAERDSL
ATLLARHFPEALAAALLLLLAGLWRAGLRQGPLQPVASRSRRQLEEHLRAGADFLLRQRGHVALLHGLQRDI
LRRARRRHPGFEQLGVAEQWQILGRMTRLPPSAISQAMRPYPAQRLSAADFTRQVAHLQSLRNAL*

AnnotationID:1320 GeneID:1311

AnnotatorUID: diggins

Modification Date/Time: 2005-04-04 13:01:02

Gene Name:

Confidence Code: 4

GeneProduct: hypothetical protein

Cell Localization: ()

Synonyms: PA4321

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits above 0.01 threshold.

Genomic Context:

Comment:

ReferenceID:2625

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19767

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1311

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2386 PA4321_tr translation of PA4321 425 99.05 99.29 2 2163.0

76440 gb|AAG07709.1|AE004848_8 (AE004848) hypothetical protein PA4321 [Pseudomonas aeruginosa PAO1] 425 99.05 99.29 2 2163.0

76441 gb|AAO57771.1| (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 438 51.59 66.43 45 1104.0

GC ORFID: `44313`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4321`	Glimmer Score:
Start: `4277154`	Stop: `4278431`
Length: `1278`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4321 translation of PA4321`	Homolog Bit Score `837.0`
Other Homologs: `psyr_15may02_Scaffold12_revised_gene1949 (ORF: BLASTX 434.0), t_PA4321 (ORF: GLIMMER)`
GC ORF Sequence
ATGATGAGCCGGCGCGCGCGCTTCCTGTTGCTTGCCGTGCTCCTGCTGCTGGCCGGGCTGCTGGCGATCTTC CTGGCCAGCCGCCTGCAACCCTATACGGAGACGATCGACCTCGGCCCATCGCCGGAGGCCCGGCGCAATCCC TACCTGGCCGCCGAACTGTTCCTGCGCAAGCAGGGGGTCACGGTGAGCCGCGCCGACGGCCTTGAGGTCCTC AAGGAACTGCCGCCCTCCGGGCATACCCTGCTCCTGCTCGGCAGCCGCTCCGGCATGACTCCCGGCCAGGCG CGCCGCCTGCTGCAATGGAGCGAGCAGGGCGGGCACCTGGTGCTGATCGCCGAACGCCTGTGGGACGAGGAC GAGAAGAAGAGCGGCGACCTGCTGCTCGACAGCCTGGATATCCGCCAGTACCTGACCGAGGACTTCGACGAC AGCCAGGACCGGGCCAGCGAGGAAACCGCCGACGCCGACGCCGACGCCGACGAAGGTAGCGTCGACGACCAT GCGACCGAAGCGCCGCCGGAGGAAGCCGCCGGCGAGgAAGAAGAGCCCGCCGACAGCGTGCCGGACTATTCC GCACTGACCCGCCTGTACCTGGAAAACGAGCGCTCGCCGGCCTACATCGGCTTCGATCCCGACTACCACCTC TACGATCCGCAGAACCACGCCTACGCCTGGGCCAACAGCGGCGACGCCACCCACCTGTTGCAGATGCAGCAC GGCAAGGGCCTGGTCACGGTGCTCACCGACGCCTGGATCTGGCAGAACCGCAACATCGAGCAGTACGACAAC GCCTGGCTGCTCTGGTACCTGACCCAGGACAACCAGGTGACCCTGCTCTACCGCGCCGAACGCGACAGCCTC GCCACCCTGCTCGCCCGCCACTTCCCCGAGGCCCTGGCGGCAGCGCTGCTGCTGTTGCTCGCTGGCCTGTGG CGCGCAGGGCTGCGCCAGGGTCCCTTGCAGCCGGTGGCCAGCCGTTCGCGCCGGCAACTGGAGGAACACCTG CGCGCCGGCGCCGACTTCCTCCTCCGCCAGCGCGGCCACGTCGCCTTGCTGCACGGTCTGCAACGCGACATC CTGCGCAGGGCGCGGCGTCGCCACCCCGGTTTCGAACAGCTCGGCGTCGCCGAGCAATGGCAGATCCTCGGG CGCATGACCCGCCTGCCACCCAGCGCCATCAGCCAGGCCATGCGCCCATATCCGGCGCAGCGCCTTTCCGCT GCCGACTTCACCCGCCAGGTCGCCCACCTGCAAAGCCTCAGGAATGCCCTATGA