ViewGene
Locus Name:
GeneID:
Location:

GeneID:1310
TrivialName: PA14_17890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17890
PAO1 Ortholog Locus:PA3588
Sequence Length:1251
Protein Length:416
Start: 1536090
Stop: 1537340
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06976.1|AE004779_8 (AE004779) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 413/416 (99%), Positives = 414/416 (99%)
Sequence:
ATGAACAACAACAAGAAATGCGCGTTTTTCCTGCTGCCGATCCTTGCCGGCGATAGCGTTCCCGCCCTGGCC
GAGGGCTTCCTCGAAGACTCGCGGGCCAGCCTGGCCTTGCGCAACTTCTACATGAACCGCGACTTCCGCGAT
GGCGTGGGGCGTGCGAAAAGCGAGGAGTGGGCCCAGGGCTTTCTCTTCGACTACCGATCGGGCTATACCGAG
GGCACCCTCGGCGTGGGTCTCGACCTGCTGGGCAAGCTCGGCGTCCGGCTCGATTCCGGCGCGGGGCGTAGC
GGCACCGGCCTGCTTCCGCTTCGCGACGATGGCAGCGCGGCGGGCGACTACGCGCGGCTGGACGCGACCGCC
AAGCTGCGCCTGTCGCGCAGCGAGCTGAAGGTCGGCGGCCTGGTGCCGAAGCTACCGACCATCCAGCCCAAC
TACGGGCGGCTATTCCCCCAGGTGTTCCAGGGCGCGCTGCTGACTTCCGGCGAACTGAGCGGACTGAGCCTG
AACCTGGGACGGCTGACCGAGGTCAGCCAGCGCAACGAGGCGGGCACCAGCGACCTGGCGCTGTTCAACCGC
AACCGGCGTTTCGCCGGCGCGGCGCAGGCGGACCGTTTCGACCTGGCTGGCCTGGACTACCGTATCGCCCCG
GACTGGACCGGCAGCTACCACTATGGCGAACTGGAGCAGGTCTACGCCCAGCATTTCCTCGGTCTCAAGGGG
CGCATCGGCGTCGCTGCGGATAGCCTGGAGAGCGACTTGCGCCTGGCGCTCAGCCGGGATACCGGCGGCGCT
CGCGGCGGGCGCATCGACAACCGTTCCTTCAGCGGGTCGCTCACCTACCGCCTGCGCAACGGCCAGGCCTTC
GGCCTGGGCTACCAGCGGATGAGCGGCGACCACGGTTTCCCCTACCTGGAGGGGACCGATCCGTACCTGGTC
AATTTCGGCCAGTACAACGACTTCGCCGAGGCTGGCGAATCCTCCTGGCAACTGCGCTACGACTGCGACTTC
GCGCCGCTCGGGGTGCCCGGCCTGAGCCTGATGACGCGCTATTTCAGCGGCCATGGCGCGAAACCGAAGGGC
GCCGACGGCAGTCGCGAGTGGGAACGCGACAGCGACCTGCGCTACGTGTTGCAGGGCGGTCCGCTGAAGGGA
CTGGGGCTGGTCTGGCGCAACGCTACCTACCGTTCGGCCTTCAGCCGCGACATCGACGAGAACCGCCTGTAC
CTGACCTATGAGCTGCCGCTGTTCTGA
Translation:
MNNNKKCAFFLLPILAGDSVPALAEGFLEDSRASLALRNFYMNRDFRDGVGRAKSEEWAQGFLFDYRSGYTE
GTLGVGLDLLGKLGVRLDSGAGRSGTGLLPLRDDGSAAGDYARLDATAKLRLSRSELKVGGLVPKLPTIQPN
YGRLFPQVFQGALLTSGELSGLSLNLGRLTEVSQRNEAGTSDLALFNRNRRFAGAAQADRFDLAGLDYRIAP
DWTGSYHYGELEQVYAQHFLGLKGRIGVAADSLESDLRLALSRDTGGARGGRIDNRSFSGSLTYRLRNGQAF
GLGYQRMSGDHGFPYLEGTDPYLVNFGQYNDFAEAGESSWQLRYDCDFAPLGVPGLSLMTRYFSGHGAKPKG
ADGSREWERDSDLRYVLQGGPLKGLGLVWRNATYRSAFSRDIDENRLYLTYELPLF*
AnnotationID:1319GeneID:1310
AnnotatorUID: diggins
Modification Date/Time: 2005-07-04 09:09:10
Gene Name:
Confidence Code:3
GeneProduct:putative porin
Cell Localization:(6) Outer membrane protein
Synonyms:PA3588
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67041.1|AE016333_2 (AE016779) porin, putative [Pseudomonas putida KT2440]
          Length = 429

 Score =  409 bits (1051), Expect = e-113
 Identities = 198/398 (49%), Positives = 267/398 (67%), Gaps = 3/398 (0%)

>gb|AAN68878.1|AE016519_11 (AE016786) phenylacetic acid-specific porin [Pseudomonas putida
           KT2440]
          Length = 417

 Score =  330 bits (847), Expect = 8e-90
 Identities = 184/402 (45%), Positives = 240/402 (59%), Gaps = 15/402 (3%)








 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  92.9% aligned
Score =  277 bits (709), Expect = 4e-75
Identities = 153/418 (36%), Positives = 206/418 (49%), Gaps = 44/418 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2623




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31955




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1310_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1310
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2375
                           PA3588_tr
                           translation of PA3588
                           416
                           99.27
                           99.51
                           0
                           2163.0
     

     
     
76411
                           gb|AAG06976.1|AE004779_8
                           (AE004779) probable porin [Pseudomonas aeruginosa PAO1]
                           416
                           99.27
                           99.51
                           0
                           2163.0
     

     
     
2376
                           PA0755_tr
                           translation of PA0755
                           429
                           54.31
                           68.53
                           15
                           1196.0
     

     
     
76412
                           gb|AAG04144.1|AE004510_8
                           (AE004510) probable porin [Pseudomonas aeruginosa PAO1]
                           429
                           54.31
                           68.53
                           15
                           1196.0
     

     
     
76414
                           gb|AAG04414.1|AE004535_1
                           (AE004535) probable porin [Pseudomonas aeruginosa PAO1]
                           434
                           50.69
                           62.21
                           36
                           1029.0
     

     






      

          
GC ORFID: 44312How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3588Glimmer Score: 

          
Start: 3417846Stop: 3416596

          
Length: 1251


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3588 translation of PA3588Homolog Bit Score 837.0

          
Other Homologs:  t_PA0755 (ORF: BLASTX 466.0), t_PA1025 (ORF: BLASTX 394.0), t_PA3038 (ORF: BLASTX 390.0), t_PA2213 (ORF: BLASTX 370.0), t_PA2113 (ORF: BLASTX 363.0), t_PA4179 (ORF: BLASTX 333.0), t_PA4137 (ORF: BLASTX 330.0), t_PA0291 (ORF: BLASTX 319.0), t_PA4898 (ORF: BLASTX 306.0), t_PA0240 (ORF: BLASTX 292.0), t_PA3588 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAACAACAAGAAATGCGCGTTTTTCCTGCTGCCGATCCTTGCCGGCGATAGCGTTCCCGCCCTGGCC 
GAGGGCTTCCTCGAAGACTCGCGGGCCAGCCTGGCCTTGCGCAACTTCTACATGAACCGCGACTTCCGCGAT 
GGCGTGGGGCGTGCGAAAAGCGAGGAGTGGGCCCAGGGCTTTCTCTTCGACTACCGATCGGGCTATACCGAG 
GGCACCCTCGGCGTGGGTCTCGACCTGCTGGGCAAGCTCGGCGTCCGGCTCGATTCCGGCGCGGGGCGTAGC 
GGCACCGGCCTGCTTCCGCTTCGCGACGATGGCAGCGCGGCGGGCGACTACGCGCGGCTGGACGCGACCGCC 
AAGCTGCGCCTGTCGCGCAGCGAGCTGAAGGTCGGCGGCCTGGTGCCGAAGCTACCGACCATCCAGCCCAAC 
TACGGGCGGCTATTCCCCCAGGTGTTCCAGGGCGCGCTGCTGACTTCCGGCGAACTGAGCGGACTGAGCCTG 
AACCTGGGACGGCTGACCGAGGTCAGCCAGCGCAACGAGGCGGGCACCAGCGACCTGGCGCTGTTCAACCGC 
AACCGGCGTTTCGCCGGCGCGGCGCAGGCGGACCGTTTCGACCTGGCTGGCCTGGACTACCGTATCGCCCCG 
GACTGGACCGGCAGCTACCACTATGGCGAACTGGAGCAGGTCTACGCCCAGCATTTCCTCGGTCTCAAGGGG 
CGCATCGGCGTCGCTGCGGATAGCCTGGAGAGCGACTTGCGCCTGGCGCTCAGCCGGGATACCGGCGGCGCT 
CGCGGCGGGCGCATCGACAACCGTTCCTTCAGCGGGTCGCTCACCTACCGCCTGCGCAACGGCCAGGCCTTC 
GGCCTGGGCTACCAGCGGATGAGCGGCGACCACGGTTTCCCCTACCTGGAGGGGACCGATCCGTACCTGGTC 
AATTTCGGCCAGTACAACGACTTCGCCGAGGCTGGCGAATCCTCCTGGCAACTGCGCTACGACTGCGACTTC 
GCGCCGCTCGGGGTGCCCGGCCTGAGCCTGATGACGCGCTATTTCAGCGGCCATGGCGCGAAACCGAAGGGC 
GCCGACGGCAGTCGCGAGTGGGAACGCGACAGCGACCTGCGCTACGTGTTGCAGGGCGGTCCGCTGAAGGGA 
CTGGGGCTGGTCTGGCGCAACGCTACCTACCGTTCGGCCTTCAGCCGCGACATCGACGAGAACCGCCTGTAC 
CTGACCTATGAGCTGCCGCTGTTCTGA