|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG05518.1|AE004640_7 (AE004640) usher CupA3 [Pseudomonas aeruginosa PAO1]
Identities = 863/872 (98%), Positives = 864/872 (99%)
|
Sequence:
ATGACCTATCGCCATGAACGCCGCTGCCGCACCGGCACGGCCCTGATGGCGGGCGGCATGGCGCTGGCGGCG
AGCGCCTTCGGTCATGCCCAGCCCGGCTACGAATTCGATGATCGCCTGTTGCTCGGCTCTTCCCTGGGCGGC
GGCGACCTGTCGCGCTTCAACCAGGACGGTCGGATCGATCCGGGTCGCTATCACGTGGATGTCTACCTCAAC
GAGCGCTTCGCCAGCCGCAGCGAAGTGAGTTTCCGCGCCAACCCCGCCAGCGGCGCGGTGGAGCCCTGCCTC
GACGAAGACTTCCTGCGCCAGCGCCTCGGCGCCAAGCCTGGTGACGATCCGCGCAAGAGCGGCGACGGGCGC
CACTGCGCCTTTCTCGGTGCACGCCTGCCCGGCTCGCGGTTCAGCCTGGACGTCGCCCGCCTGCGCCTGGAT
CTCTCGGTGCCGCAAGCCTTGCTCGACCTCAAGCCGCGCGGCTACGTCAGCCCCGAGGAGTGGGACGCCGGC
GACAGCATGGGCTTCGTCAACTACGACACCAACCTCTATCGCTCCGAATACCGCGGCGGCGAATCGGGACGA
TCGGACTACGCCTATGTCGGCCTGAACAGCGGCATCAACCTCGGCCTGTGGCGTTTGCGCCACCAGTCCAAC
TACACCTATTCCCGCTACAACGGGCAGGCCAGGCGCAAGTGGAACGGCATCCGCACCTATGCCCAGCGCGCC
TTGCCGGCCTGGCGCAGCGAACTGACGGCGGGGGAGAGCTACACCGCCGGCAACCTGCTCGGCAGCATCGGC
TACCGCGGCCTGAGCCTGGCCACCGACGACCGCATGCTGCCCGAGTCCCTGCGCCGCTATGCGCCGCAGGTG
CGCGGCACAGCGGCCACCGCGGCGCGGGTGGTGATCAGCCAGAACGGCAGGAAGATCCGCGAGGTGAATGTC
GCCCCCGGTCCGTTCGTCATCGACGATCTCTACGACAGCGCCTATGCCGGCGATCTGGATGTCCAGGTGTTC
GAAGCCGATGGCAGCGTATCGAGCTTCAGCGTGCCGTTCGCCTCGGTCCCGGAGTCCATGCGTCCCGGCCTG
TCGCGCTACAGCTTCACCCTGGGCCAGGCGCGCCAGTACGGCGACGGCGACGACCTGTTCGCCGACTTCACC
TACCAGCGCGGCATGAGCAACGCCCTGACCGCCAACCTGGGACTGCGTGTCGCCGACGACTACCTGGCCATG
CTGGGCGGCGGCGTCCTCGCCACCCGCTTCGGCGCCTTCGGCCTGAACAGCACCTATTCCAGCGCACGCGTC
GAGGATGGCGCGCGCAAGCAGGGCTGGCGCATCGGGCTCGACTACAGCCGGACCTTCCAGCCCACCGGCACT
ACCCTGACCCTGGCCGGCTACCGCTATTCCACCGAAGGCTACCGCGAACTCGGCGACGTGCTCGGCTCGCGC
GACGCACTGCGCCACGGGGACACCTGGGATTCCGGCAGCTACAAGCAGCGCAACCAGTTCAACCTGCTGGTG
AGCCAGGCCCTCGGCGGTTACGGCAACCTCTATCTTTCCGGCTCCTCCAGCGATTTCTACGACGGCAAGAGC
CGCGACACCCAATTGCAGTTCGGCTACTCCAACACCTGGGGGCAGTTGAGCTACAACCTCGCCTGGTCGCGG
CAGACCACCACCTACTACCAGGAGCAGGGCGACCAGGACCCTGGCGTCGAGCTGCTCCGGCGCGACCGGCGC
AGCGGCCAGCGCAACGACACCCTGACCCTCAGCGTCTCCATGCCGCTGGGTTCTTCCAGTCGGGCGCCGACG
CTCAGCGCCATGGCTACCCGGCGCTCCGGCGACAGCCGTGGCGGCAGCCTGCAAACCGGGCTGAACGGTACG
CTGGGCGACGAGCGTACCTGGAGCTACGCGCTGTCCGCCAACCGCGACAGCGAGGTCGCCGACACCACCTGG
AACGGCACGTTGCAGAAGCAGGCGGCGCTGGCCACCGTGAATGCCGGCTATGCCCAGGGCGATCGCTACCGG
CAATACAGCGGCGGCATCCGTGGCGCGCTGGTCGCCCACCGCGACGGGCTGACCCTGGGCCCCAGCGTCGGC
GATACCTTCGCCCTGGTCGAGGCCAAGGGCGCCAGCGGTGCCGCGATACGCGGCGGGCAGGGCGCGCGCATC
GACGGCAACGGCTATGCGCTGGCTCCCTCGCTGTCGCCCTATCGCTACAACCCGATCTCCCTCGATCCCGTT
GGCATCGATCCCGACGCCGAACTGCTGGAAACCGAGCGCAAGGTCGCGCCCTACGCCGGTGCCAGCGTGCGC
GTGACGTTCAGGACGCTGACCGGCCATCCGCTGCTGATCCAGGCGCGGCGCGAGGACGGCAGTGTGCTGCCG
CTCGGCGCCGTGGTGGTCGACGACGGCGGGGCGGCCATCGGCATGGTCGGGCAGGGCGGCCAGGTCTATGCG
CGCGCGGAAAACCAGCGGGGCAGGTTGCTGGTGCAATGGGGAACGGCACGGCAGGAGCGTTGCGAGCTGCCC
TACGACCTGGCCGGCGCGCCCCGCGACCAGGTGCTGATCCGCCTGCGCGGCACCTGCCGGGCAGCCGCCATC
GATTCCAACCCGGAGACCGCCAGATGA |
Translation:
MTYRHERRCRTGTALMAGGMALAASAFGHAQPGYEFDDRLLLGSSLGGGDLSRFNQDGRIDPGRYHVDVYLN
ERFASRSEVSFRANPASGAVEPCLDEDFLRQRLGAKPGDDPRKSGDGRHCAFLGARLPGSRFSLDVARLRLD
LSVPQALLDLKPRGYVSPEEWDAGDSMGFVNYDTNLYRSEYRGGESGRSDYAYVGLNSGINLGLWRLRHQSN
YTYSRYNGQARRKWNGIRTYAQRALPAWRSELTAGESYTAGNLLGSIGYRGLSLATDDRMLPESLRRYAPQV
RGTAATAARVVISQNGRKIREVNVAPGPFVIDDLYDSAYAGDLDVQVFEADGSVSSFSVPFASVPESMRPGL
SRYSFTLGQARQYGDGDDLFADFTYQRGMSNALTANLGLRVADDYLAMLGGGVLATRFGAFGLNSTYSSARV
EDGARKQGWRIGLDYSRTFQPTGTTLTLAGYRYSTEGYRELGDVLGSRDALRHGDTWDSGSYKQRNQFNLLV
SQALGGYGNLYLSGSSSDFYDGKSRDTQLQFGYSNTWGQLSYNLAWSRQTTTYYQEQGDQDPGVELLRRDRR
SGQRNDTLTLSVSMPLGSSSRAPTLSAMATRRSGDSRGGSLQTGLNGTLGDERTWSYALSANRDSEVADTTW
NGTLQKQAALATVNAGYAQGDRYRQYSGGIRGALVAHRDGLTLGPSVGDTFALVEAKGASGAAIRGGQGARI
DGNGYALAPSLSPYRYNPISLDPVGIDPDAELLETERKVAPYAGASVRVTFRTLTGHPLLIQARREDGSVLP
LGAVVVDDGGAAIGMVGQGGQVYARAENQRGRLLVQWGTARQERCELPYDLAGAPRDQVLIRLRGTCRAAAI
DSNPETAR* |
AnnotationID:141 | GeneID:131 |
|
Modification Date/Time: |
2005-03-03 10:10:47 |
|
|
|
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (16) Motility & Attachment |
|
Alternate Gene Product Name: | fimbrial biogenesis usher protein |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | intracellular trafficking and secretion |
|
|
|
|
Homology: | >gb|AAM83940.1|AE013635_5 (AE013635) outer membrane usher protein FIMD precursor [Yersinia
pestis KIM]
Length = 875
Score = 761 bits (1964), Expect = 0.0
Identities = 397/858 (46%), Positives = 546/858 (63%), Gaps = 36/858 (4%)
>gb|AAG55651.1|AE005303_7 (AE005303) putative usher protein [Escherichia coli O157:H7 EDL933]
Length = 840
Score = 714 bits (1843), Expect = 0.0
Identities = 376/833 (45%), Positives = 519/833 (62%), Gaps = 27/833 (3%)
>gb|AAL19292.1| (AE008710) putative fimbriae; usher [Salmonella typhimurium LT2]
Length = 853
Score = 620 bits (1600), Expect = e-177
Identities = 365/838 (43%), Positives = 494/838 (58%), Gaps = 30/838 (3%)
|
|
Structural Features: | COG3188, FimD, P pilus assembly protein, porin PapC
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 835 residues, 100.0% aligned
Score = 778 bits (2010), Expect = 0.0
Identities = 372/865 (43%), Positives = 497/865 (57%), Gaps = 38/865 (4%)
pfam00577, Usher, Fimbrial Usher protein.
CD-Length = 783 residues, 99.9% aligned
Score = 695 bits (1794), Expect = 0.0
Identities = 329/814 (40%), Positives = 456/814 (56%), Gaps = 36/814 (4%) |
|
|
|
|
|