ViewGene

Locus Name:
GeneID:
Location:

GeneID:131
TrivialName: PA14_37030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37030
PAO1 Ortholog Locus:PA2130
Sequence Length:2619
Protein Length:872
Start: 3299533
Stop: 3296915
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05518.1|AE004640_7 (AE004640) usher CupA3 [Pseudomonas aeruginosa PAO1]
Identities = 863/872 (98%), Positives = 864/872 (99%)
Sequence:
ATGACCTATCGCCATGAACGCCGCTGCCGCACCGGCACGGCCCTGATGGCGGGCGGCATGGCGCTGGCGGCG
AGCGCCTTCGGTCATGCCCAGCCCGGCTACGAATTCGATGATCGCCTGTTGCTCGGCTCTTCCCTGGGCGGC
GGCGACCTGTCGCGCTTCAACCAGGACGGTCGGATCGATCCGGGTCGCTATCACGTGGATGTCTACCTCAAC
GAGCGCTTCGCCAGCCGCAGCGAAGTGAGTTTCCGCGCCAACCCCGCCAGCGGCGCGGTGGAGCCCTGCCTC
GACGAAGACTTCCTGCGCCAGCGCCTCGGCGCCAAGCCTGGTGACGATCCGCGCAAGAGCGGCGACGGGCGC
CACTGCGCCTTTCTCGGTGCACGCCTGCCCGGCTCGCGGTTCAGCCTGGACGTCGCCCGCCTGCGCCTGGAT
CTCTCGGTGCCGCAAGCCTTGCTCGACCTCAAGCCGCGCGGCTACGTCAGCCCCGAGGAGTGGGACGCCGGC
GACAGCATGGGCTTCGTCAACTACGACACCAACCTCTATCGCTCCGAATACCGCGGCGGCGAATCGGGACGA
TCGGACTACGCCTATGTCGGCCTGAACAGCGGCATCAACCTCGGCCTGTGGCGTTTGCGCCACCAGTCCAAC
TACACCTATTCCCGCTACAACGGGCAGGCCAGGCGCAAGTGGAACGGCATCCGCACCTATGCCCAGCGCGCC
TTGCCGGCCTGGCGCAGCGAACTGACGGCGGGGGAGAGCTACACCGCCGGCAACCTGCTCGGCAGCATCGGC
TACCGCGGCCTGAGCCTGGCCACCGACGACCGCATGCTGCCCGAGTCCCTGCGCCGCTATGCGCCGCAGGTG
CGCGGCACAGCGGCCACCGCGGCGCGGGTGGTGATCAGCCAGAACGGCAGGAAGATCCGCGAGGTGAATGTC
GCCCCCGGTCCGTTCGTCATCGACGATCTCTACGACAGCGCCTATGCCGGCGATCTGGATGTCCAGGTGTTC
GAAGCCGATGGCAGCGTATCGAGCTTCAGCGTGCCGTTCGCCTCGGTCCCGGAGTCCATGCGTCCCGGCCTG
TCGCGCTACAGCTTCACCCTGGGCCAGGCGCGCCAGTACGGCGACGGCGACGACCTGTTCGCCGACTTCACC
TACCAGCGCGGCATGAGCAACGCCCTGACCGCCAACCTGGGACTGCGTGTCGCCGACGACTACCTGGCCATG
CTGGGCGGCGGCGTCCTCGCCACCCGCTTCGGCGCCTTCGGCCTGAACAGCACCTATTCCAGCGCACGCGTC
GAGGATGGCGCGCGCAAGCAGGGCTGGCGCATCGGGCTCGACTACAGCCGGACCTTCCAGCCCACCGGCACT
ACCCTGACCCTGGCCGGCTACCGCTATTCCACCGAAGGCTACCGCGAACTCGGCGACGTGCTCGGCTCGCGC
GACGCACTGCGCCACGGGGACACCTGGGATTCCGGCAGCTACAAGCAGCGCAACCAGTTCAACCTGCTGGTG
AGCCAGGCCCTCGGCGGTTACGGCAACCTCTATCTTTCCGGCTCCTCCAGCGATTTCTACGACGGCAAGAGC
CGCGACACCCAATTGCAGTTCGGCTACTCCAACACCTGGGGGCAGTTGAGCTACAACCTCGCCTGGTCGCGG
CAGACCACCACCTACTACCAGGAGCAGGGCGACCAGGACCCTGGCGTCGAGCTGCTCCGGCGCGACCGGCGC
AGCGGCCAGCGCAACGACACCCTGACCCTCAGCGTCTCCATGCCGCTGGGTTCTTCCAGTCGGGCGCCGACG
CTCAGCGCCATGGCTACCCGGCGCTCCGGCGACAGCCGTGGCGGCAGCCTGCAAACCGGGCTGAACGGTACG
CTGGGCGACGAGCGTACCTGGAGCTACGCGCTGTCCGCCAACCGCGACAGCGAGGTCGCCGACACCACCTGG
AACGGCACGTTGCAGAAGCAGGCGGCGCTGGCCACCGTGAATGCCGGCTATGCCCAGGGCGATCGCTACCGG
CAATACAGCGGCGGCATCCGTGGCGCGCTGGTCGCCCACCGCGACGGGCTGACCCTGGGCCCCAGCGTCGGC
GATACCTTCGCCCTGGTCGAGGCCAAGGGCGCCAGCGGTGCCGCGATACGCGGCGGGCAGGGCGCGCGCATC
GACGGCAACGGCTATGCGCTGGCTCCCTCGCTGTCGCCCTATCGCTACAACCCGATCTCCCTCGATCCCGTT
GGCATCGATCCCGACGCCGAACTGCTGGAAACCGAGCGCAAGGTCGCGCCCTACGCCGGTGCCAGCGTGCGC
GTGACGTTCAGGACGCTGACCGGCCATCCGCTGCTGATCCAGGCGCGGCGCGAGGACGGCAGTGTGCTGCCG
CTCGGCGCCGTGGTGGTCGACGACGGCGGGGCGGCCATCGGCATGGTCGGGCAGGGCGGCCAGGTCTATGCG
CGCGCGGAAAACCAGCGGGGCAGGTTGCTGGTGCAATGGGGAACGGCACGGCAGGAGCGTTGCGAGCTGCCC
TACGACCTGGCCGGCGCGCCCCGCGACCAGGTGCTGATCCGCCTGCGCGGCACCTGCCGGGCAGCCGCCATC
GATTCCAACCCGGAGACCGCCAGATGA
Translation:
MTYRHERRCRTGTALMAGGMALAASAFGHAQPGYEFDDRLLLGSSLGGGDLSRFNQDGRIDPGRYHVDVYLN
ERFASRSEVSFRANPASGAVEPCLDEDFLRQRLGAKPGDDPRKSGDGRHCAFLGARLPGSRFSLDVARLRLD
LSVPQALLDLKPRGYVSPEEWDAGDSMGFVNYDTNLYRSEYRGGESGRSDYAYVGLNSGINLGLWRLRHQSN
YTYSRYNGQARRKWNGIRTYAQRALPAWRSELTAGESYTAGNLLGSIGYRGLSLATDDRMLPESLRRYAPQV
RGTAATAARVVISQNGRKIREVNVAPGPFVIDDLYDSAYAGDLDVQVFEADGSVSSFSVPFASVPESMRPGL
SRYSFTLGQARQYGDGDDLFADFTYQRGMSNALTANLGLRVADDYLAMLGGGVLATRFGAFGLNSTYSSARV
EDGARKQGWRIGLDYSRTFQPTGTTLTLAGYRYSTEGYRELGDVLGSRDALRHGDTWDSGSYKQRNQFNLLV
SQALGGYGNLYLSGSSSDFYDGKSRDTQLQFGYSNTWGQLSYNLAWSRQTTTYYQEQGDQDPGVELLRRDRR
SGQRNDTLTLSVSMPLGSSSRAPTLSAMATRRSGDSRGGSLQTGLNGTLGDERTWSYALSANRDSEVADTTW
NGTLQKQAALATVNAGYAQGDRYRQYSGGIRGALVAHRDGLTLGPSVGDTFALVEAKGASGAAIRGGQGARI
DGNGYALAPSLSPYRYNPISLDPVGIDPDAELLETERKVAPYAGASVRVTFRTLTGHPLLIQARREDGSVLP
LGAVVVDDGGAAIGMVGQGGQVYARAENQRGRLLVQWGTARQERCELPYDLAGAPRDQVLIRLRGTCRAAAI
DSNPETAR*
AnnotationID:141GeneID:131
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 10:10:47
Gene Name:cupA3
Confidence Code:1
GeneProduct:usher
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:fimbrial biogenesis usher protein
Functional Category Confidence Code:5
COGs:COG3188,pfam00577
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM83940.1|AE013635_5 (AE013635) outer membrane usher protein FIMD precursor [Yersinia
           pestis KIM]
          Length = 875

 Score =  761 bits (1964), Expect = 0.0
 Identities = 397/858 (46%), Positives = 546/858 (63%), Gaps = 36/858 (4%)

>gb|AAG55651.1|AE005303_7 (AE005303) putative usher protein [Escherichia coli O157:H7 EDL933]
          Length = 840

 Score =  714 bits (1843), Expect = 0.0
 Identities = 376/833 (45%), Positives = 519/833 (62%), Gaps = 27/833 (3%)

>gb|AAL19292.1| (AE008710) putative fimbriae; usher [Salmonella typhimurium LT2]
          Length = 853

 Score =  620 bits (1600), Expect = e-177
 Identities = 365/838 (43%), Positives = 494/838 (58%), Gaps = 30/838 (3%)

Structural Features:
COG3188, FimD, P pilus assembly protein, porin PapC 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 835 residues, 100.0% aligned
Score =  778 bits (2010), Expect = 0.0
Identities = 372/865 (43%), Positives = 497/865 (57%), Gaps = 38/865 (4%)

pfam00577, Usher, Fimbrial Usher protein.
CD-Length = 783 residues,  99.9% aligned
Score =  695 bits (1794), Expect = 0.0
Identities = 329/814 (40%), Positives = 456/814 (56%), Gaps = 36/814 (4%)
Genomic Context:
Comment:
ReferenceID:265
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17407
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32593
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:131_cdd.html
URL:
ReferenceID:34420
Author/Investigator(s): Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.
Title: The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.
PubMed: 11381121
MedLine:
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121
Homologs By Global Alignment
Gene ID:131

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
244 PA2130_tr translation of PA2130 872 98.96 99.08 0 4490.0
17203 gb|AAG05518.1|AE004640_7 (AE004640) usher CupA3 [Pseudomonas aeruginosa PAO1] 872 98.96 99.08 0 4490.0
17204 gb|AAP84169.1| (AY273869) putative fimbrial biogenesis usher protein [Pseudomonas aeruginosa] 880 66.02 77.84 18 2998.0
17209 emb|CAC90736.1| (AJ414150) probable fimbrial usher protein [Yersinia pestis CO92] 892 45.06 61.77 49 1891.0
17208 emb|CAA21381.1| (AL031866) yp38 [Yersinia pestis] 892 45.06 61.77 49 1891.0
GC ORFID: 43133How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2130Glimmer Score:
Start: 1654381Stop: 1656999
Length: 2619
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2130 translation of PA2130Homolog Bit Score 1734.0
Other Homologs: t_RL042 (ORF: BLASTX 1155.0), t_PA2130 (ORF: GLIMMER)
GC ORF Sequence
ATGACCTATCGCCATGAACGCCGCTGCCGCACCGGCACGGCCCTGATGGCGGGCGGCATGGCGCTGGCGGCG
AGCGCCTTCGGTCATGCCCAGCCCGGCTACGAATTCGATGATCGCCTGTTGCTCGGCTCTTCCCTGGGCGGC
GGCGACCTGTCGCGCTTCAACCAGGACGGTCGGATCGATCCGGGTCGCTATCACGTGGATGTCTACCTCAAC
GAGCGCTTCGCCAGCCGCAGCGAAGTGAGTTTCCGCGCCAACCCCGCCAGCGGCGCGGTGGAGCCCTGCCTC
GACGAAGACTTCCTGCGCCAGCGCCTCGGCGCCAAGCCTGGTGACGATCCGCGCAAGAGCGGCGACGGGCGC
CACTGCGCCTTTCTCGGTGCACGCCTGCCCGGCTCGCGGTTCAGCCTGGACGTCGCCCGCCTGCGCCTGGAT
CTCTCGGTGCCGCAAGCCTTGCTCGACCTCAAGCCGCGCGGCTACGTCAGCCCCGAGGAGTGGGACGCCGGC
GACAGCATGGGCTTCGTCAACTACGACACCAACCTCTATCGCTCCGAATACCGCGGCGGCGAATCGGGACGA
TCGGACTACGCCTATGTCGGCCTGAACAGCGGCATCAACCTCGGCCTGTGGCGTTTGCGCCACCAGTCCAAC
TACACCTATTCCCGCTACAACGGGCAGGCCAGGCGCAAGTGGAACGGCATCCGCACCTATGCCCAGCGCGCC
TTGCCGGCCTGGCGCAGCGAACTGACGGCGGGGGAGAGCTACACCGCCGGCAACCTGCTCGGCAGCATCGGC
TACCGCGGCCTGAGCCTGGCCACCGACGACCGCATGCTGCCCGAGTCCCTGCGCCGCTATGCGCCGCAGGTG
CGCGGCACAGCGGCCACCGCGGCGCGGGTGGTGATCAGCCAGAACGGCAGGAAGATCCGCGAGGTGAATGTC
GCCCCCGGTCCGTTCGTCATCGACGATCTCTACGACAGCGCCTATGCCGGCGATCTGGATGTCCAGGTGTTC
GAAGCCGATGGCAGCGTATCGAGCTTCAGCGTGCCGTTCGCCTCGGTCCCGGAGTCCATGCGTCCCGGCCTG
TCGCGCTACAGCTTCACCCTGGGCCAGGCGCGCCAGTACGGCGACGGCGACGACCTGTTCGCCGACTTCACC
TACCAGCGCGGCATGAGCAACGCCCTGACCGCCAACCTGGGACTGCGTGTCGCCGACGACTACCTGGCCATG
CTGGGCGGCGGCGTCCTCGCCACCCGCTTCGGCGCCTTCGGCCTGAACAGCACCTATTCCAGCGCACGCGTC
GAGGATGGCGCGCGCAAGCAGGGCTGGCGCATCGGGCTCGACTACAGCCGGACCTTCCAGCCCACCGGCACT
ACCCTGACCCTGGCCGGCTACCGCTATTCCACCGAAGGCTACCGCGAACTCGGCGACGTGCTCGGCTCGCGC
GACGCACTGCGCCACGGGGACACCTGGGATTCCGGCAGCTACAAGCAGCGCAACCAGTTCAACCTGCTGGTG
AGCCAGGCCCTCGGCGGTTACGGCAACCTCTATCTTTCCGGCTCCTCCAGCGATTTCTACGACGGCAAGAGC
CGCGACACCCAATTGCAGTTCGGCTACTCCAACACCTGGGGGCAGTTGAGCTACAACCTCGCCTGGTCGCGG
CAGACCACCACCTACTACCAGGAGCAGGGCGACCAGGACCCTGGCGTCGAGCTGCTCCGGCGCGACCGGCGC
AGCGGCCAGCGCAACGACACCCTGACCCTCAGCGTCTCCATGCCGCTGGGTTCTTCCAGTCGGGCGCCGACG
CTCAGCGCCATGGCTACCCGGCGCTCCGGCGACAGCCGTGGCGGCAGCCTGCAAACCGGGCTGAACGGTACG
CTGGGCGACGAGCGTACCTGGAGCTACGCGCTGTCCGCCAACCGCGACAGCGAGGTCGCCGACACCACCTGG
AACGGCACGTTGCAGAAGCAGGCGGCGCTGGCCACCGTGAATGCCGGCTATGCCCAGGGCGATCGCTACCGG
CAATACAGCGGCGGCATCCGTGGCGCGCTGGTCGCCCACCGCGACGGGCTGACCCTGGGCCCCAGCGTCGGC
GATACCTTCGCCCTGGTCGAGGCCAAGGGCGCCAGCGGTGCCGCGATACGCGGCGGGCAGGGCGCGCGCATC
GACGGCAACGGCTATGCGCTGGCTCCCTCGCTGTCGCCCTATCGCTACAACCCGATCTCCCTCGATCCCGTT
GGCATCGATCCCGACGCCGAACTGCTGGAAACCGAGCGCAAGGTCGCGCCCTACGCCGGTGCCAGCGTGCGC
GTGACGTTCAGGACGCTGACCGGCCATCCGCTGCTGATCCAGGCGCGGCGCGAGGACGGCAGTGTGCTGCCG
CTCGGCGCCGTGGTGGTCGACGACGGCGGGGCGGCCATCGGCATGGTCGGGCAGGGCGGCCAGGTCTATGCG
CGCGCGGAAAACCAGCGGGGCAGGTTGCTGGTGCAATGGGGAACGGCACGGCAGGAGCGTTGCGAGCTGCCC
TACGACCTGGCCGGCGCGCCCCGCGACCAGGTGCTGATCCGCCTGCGCGGCACCTGCCGGGCAGCCGCCATC
GATTCCAACCCGGAGACCGCCAGATGA