ViewGene
Locus Name:
GeneID:
Location:

GeneID:1309
TrivialName: PA14_33010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33010
PAO1 Ortholog Locus:PA2444
Sequence Length:1257
Protein Length:418
Start: 2889137
Stop: 2890393
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05832.1|AE004671_8 (AE004671) serine hydroxymethyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 417/418 (99%), Positives = 417/418 (99%)
Sequence:
ATGTTCAGCAAGCACGACCAGCTCCAGGGCTACGACGACGAACTGCTCGCCGCGATGGACGCCGAAGACCGG
CGGCAGGAAGACCACATCGAACTGATCGCCTCGGAGAACTACGCCAGCAAGCGGGTCATGCAGGCGCAGGGC
AGCGGCCTGACCAACAAGTATGCCGAGGGCTATCCGGGCAAGCGCTACTACGGCGGCTGCGAACACGTCGAC
AAGGTCGAGCGGCTGGCCATCGACCGCGCCAGGCAGCTGTTCGGCGCCGACTACGCCAACGTCCAGCCGCAT
TCCGGTTCCTCGGCCAACGCCGCGGTGTACCTGGCGCTGCTCAACGCCGGCGACACCATCCTCGGCATGAGC
CTGGCCCATGGCGGCCATCTCACCCATGGCGCCAAGGTGTCGTCCTCCGGCAAGCTGTACAACGCCGTGCAG
TACGGCCTGGACACCGCTACCGGGCTGATCGACTACGACGAAGTCGAGCGCCTGGCCGTGGAGCATAAGCCG
AAGATGATCGTCGCCGGCTTCTCCGCCTACTCCAAGACCCTCGACTTCCCGCGCTTCCGCGCCATCGCCGAC
AAGGTCGGCGCGCTGCTGTTCGTCGACATGGCCCACGTTGCCGGGCTGGTCGCCGCCGGCCTCTACCCGAAC
CCGATCCCCTTCGCCGACGTGGTCACCACCACCACCCACAAGACCCTGCGCGGTCCGCGCGGCGGTCTGATC
CTGGCGCGCGCCAACGAGGAGATCGAGAAGAAGCTCAACTCCGCGGTATTCCCCGGCGCCCAGGGCGGCCCG
CTGATGCACGTGATCGCGGCCAAGGCGGTGTGCTTCAAGGAAGCGCTGGAGCCGGGCTTCAAGGACTACCAG
GCGCAGGTGATCCGCAACGCCAAGGCGATGGCCGAGGTGTTTATCGGGCGCGGCTACGACGTGGTTTCCGGT
GGCACCGACAACCACCTGATGCTGATCAGCCTGGTGAAGCAGGGGCTGACCGGCAAGGCCGCCGACGCGGCG
CTCGGAGCGGCGCACATCACGGTGAACAAGAACGCCGTGCCGAACGATCCACAGAGCCCGTTCGTCACCTCC
GGCATCCGCATCGGCACCCCAGCGGTGACCACTCGCGGTTTCCGCGAGGGCGAGTGCCGCGAACTGGCTGGC
TGGATCTGCGACATCCTCGACGATATCGACAATCCCGAGGTCGGCGAACGGGTCAGGGGCCAGGTCGGCGAA
TTCTGCCGGCACTTCCCGGTCTACGCTGATTGA
Translation:
MFSKHDQLQGYDDELLAAMDAEDRRQEDHIELIASENYASKRVMQAQGSGLTNKYAEGYPGKRYYGGCEHVD
KVERLAIDRARQLFGADYANVQPHSGSSANAAVYLALLNAGDTILGMSLAHGGHLTHGAKVSSSGKLYNAVQ
YGLDTATGLIDYDEVERLAVEHKPKMIVAGFSAYSKTLDFPRFRAIADKVGALLFVDMAHVAGLVAAGLYPN
PIPFADVVTTTTHKTLRGPRGGLILARANEEIEKKLNSAVFPGAQGGPLMHVIAAKAVCFKEALEPGFKDYQ
AQVIRNAKAMAEVFIGRGYDVVSGGTDNHLMLISLVKQGLTGKAADAALGAAHITVNKNAVPNDPQSPFVTS
GIRIGTPAVTTRGFREGECRELAGWICDILDDIDNPEVGERVRGQVGEFCRHFPVYAD*
AnnotationID:1318GeneID:1309
AnnotatorUID: urbach
Modification Date/Time: 2003-12-04 00:12:01
Gene Name:glyA2
Confidence Code:2
GeneProduct: serine hydroxymethyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Cyanoamino acid metabolism;Glycine, serine and threonine 
 metabolism;Lysine degradation;Methane metabolism;One carbon 
pool by folate
Homology:
>gb|AAG57665.1|AE005485_3 (AE005485) serine hydroxymethyltransferase [Escherichia coli
           O157:H7 E
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2621




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19763




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1309
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2372
                           PA2444_tr
                           translation of PA2444
                           418
                           99.76
                           99.76
                           0
                           2162.0
     

     
     
76219
                           gb|AAG05832.1|AE004671_8
                           (AE004671) serine hydroxymethyltransferase [Pseudomonas aeruginosa PAO1]
                           418
                           99.76
                           99.76
                           0
                           2162.0
     

     
     
2373
                           PA5415_tr
                           translation of PA5415
                           418
                           91.62
                           94.49
                           1
                           1979.0
     

     
     
76220
                           gb|AAG08800.1|AE004954_2
                           (AE004954) serine hydroxymethyltransferase [Pseudomonas aeruginosa PAO1]
                           418
                           91.62
                           94.49
                           1
                           1979.0
     

     
     
76221
                           gb|AAN65953.1|AE016223_7
                           (AE016775) serine hydroxymethyltransferase [Pseudomonas putida KT2440]
                           418
                           86.84
                           92.10
                           1
                           1891.0
     

     






      

          
GC ORFID: 44311How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2444Glimmer Score: 

          
Start: 2064779Stop: 2063523

          
Length: 1257


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2444 translation of PA2444Homolog Bit Score 837.0

          
Other Homologs:  t_PA5415 (ORF: BLASTX 767.0), t_PA4602 (ORF: BLASTX 669.0), psyr_15may02_Scaffold4_revised_gene5644 (ORF: BLASTX 665.0), t_PA2444 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCAGCAAGCACGACCAGCTCCAGGGCTACGACGACGAACTGCTCGCCGCGATGGACGCCGAAGACCGG 
CGGCAGGAAGACCACATCGAACTGATCGCCTCGGAGAACTACGCCAGCAAGCGGGTCATGCAGGCGCAGGGC 
AGCGGCCTGACCAACAAGTATGCCGAGGGCTATCCGGGCAAGCGCTACTACGGCGGCTGCGAACACGTCGAC 
AAGGTCGAGCGGCTGGCCATCGACCGCGCCAGGCAGCTGTTCGGCGCCGACTACGCCAACGTCCAGCCGCAT 
TCCGGTTCCTCGGCCAACGCCGCGGTGTACCTGGCGCTGCTCAACGCCGGCGACACCATCCTCGGCATGAGC 
CTGGCCCATGGCGGCCATCTCACCCATGGCGCCAAGGTGTCGTCCTCCGGCAAGCTGTACAACGCCGTGCAG 
TACGGCCTGGACACCGCTACCGGGCTGATCGACTACGACGAAGTCGAGCGCCTGGCCGTGGAGCATAAGCCG 
AAGATGATCGTCGCCGGCTTCTCCGCCTACTCCAAGACCCTCGACTTCCCGCGCTTCCGCGCCATCGCCGAC 
AAGGTCGGCGCGCTGCTGTTCGTCGACATGGCCCACGTTGCCGGGCTGGTCGCCGCCGGCCTCTACCCGAAC 
CCGATCCCCTTCGCCGACGTGGTCACCACCACCACCCACAAGACCCTGCGCGGTCCGCGCGGCGGTCTGATC 
CTGGCGCGCGCCAACGAGGAGATCGAGAAGAAGCTCAACTCCGCGGTATTCCCCGGCGCCCAGGGCGGCCCG 
CTGATGCACGTGATCGCGGCCAAGGCGGTGTGCTTCAAGGAAGCGCTGGAGCCGGGCTTCAAGGACTACCAG 
GCGCAGGTGATCCGCAACGCCAAGGCGATGGCCGAGGTGTTTATCGGGCGCGGCTACGACGTGGTTTCCGGT 
GGCACCGACAACCACCTGATGCTGATCAGCCTGGTGAAGCAGGGGCTGACCGGCAAGGCCGCCGACGCGGCG 
CTCGGAGCGGCGCACATCACGGTGAACAAGAACGCCGTGCCGAACGATCCACAGAGCCCGTTCGTCACCTCC 
GGCATCCGCATCGGCACCCCAGCGGTGACCACTCGCGGTTTCCGCGAGGGCGAGTGCCGCGAACTGGCTGGC 
TGGATCTGCGACATCCTCGACGATATCGACAATCCCGAGGTCGGCGAACGGGTCAGGGGCCAGGTCGGCGAA 
TTCTGCCGGCACTTCCCGGTCTACGCTGATTGA