ViewGene

Locus Name:
GeneID:
Location:

GeneID:1305
TrivialName: PA14_41250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41250
PAO1 Ortholog Locus:PA1800
Sequence Length:1311
Protein Length:436
Start: 3682012
Stop: 3680702
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05189.1|AE004606_3 (AE004606) trigger factor [Pseudomonas aeruginosa PAO1]
Identities = 436/436 (100%), Positives = 436/436 (100%)
Sequence:
ATGCAAGTTTCTGTTGAAAGCACTTCCGCTCTTGAGCGCCGCATGACCGTTGGTGTGCCTGCCGAGCGTATC
GAGACCGAAGTCAACAAGCGTCTGCAGCAGACCGCCCGTCGTGCCAAGATTCCAGGTTTCCGCCCCGGCAAG
GTGCCGATGAGTGTCATTCGTCAGCGCTACGAAGCTTCCGCGCGCCAGGAAGCCATGGGCGATCTGATCCAG
GAAACCTTCTACGAAGCCGTGGTCGAGCAGAAGCTGAATCCGGCCGGTTCGCCGTCGGTAGAGCCCAAGTCC
TTCGAGAAAGGCAAGGACCTGGAATACATCGCAACCTTCGAAGTCTTCCCGGAATTTACCGTTTCCGGCCTG
GAAGATATCAAGGTCGAGCGCCTGCAGGCCGAAGTTTCCGATGCTGATGTCGACAACATGCTCGATGTCCTG
CGCAAGCAGAACACCCGTTTCGAAGTGGTCGAGCGTGCCGCCCAGAACGATGACCAGTTGAACATCGACTTC
GTCGGCAAGATCGACGGCGAAGCCTTCGCCGGCGGTTCCGCCAAGGGCACCCTGCTGGTGCTGGGCTCCGGT
CGCATGATCGCCGGCTTCGAAGAAGGGCTGGTGGGGGCGAAGGCCGGTGAAGAGCGCGTGCTCAACCTGACC
TTCCCCGAGGACTACCAGAACCTGGACCTGGCCAACAAGGCTGCCGAGTTCACCGTTACCGTCAATAGCGTT
GCCGAGCCCAAGCTGCCGGAACTGAACGAAGAGTTCTTCGCTCTGTTCGGCGTGAAGGAAACCGGTCTCGAT
GGCTTCCGCGCCGAAGTGCAGAAGAACATGGAGCGCGAGCTGCGCCAGGCGATCAAGTCCAAGGTCAAGAAC
CAGGTCATGGAAGGTCTGCTGCAGGCCAACCCGATCGAAGTGCCCAAGGCCCTGATCGGCAACGAAGTGAAC
CGTCTGCGCGTGCAGGCCGTCCAGCAGTTCGGTGGCAACATCAAGCCTGACCAACTGCCGGCCGAGCTGTTC
GAAGAGCAGGCCAAGCGCCGTGTGGTGCTGGGCCTGATCGTCGCCGAAGTGGTCAAGCAGCACGAGCTGAAG
GCCGACGAAGGTCGCGTTCGCGAAATGATCGAGGAAATGGCCTCGGCCTACCAGGAGCCCGAGCAGGTCGTC
GCCTGGTACTTCAAGAACGAGCCCCAGCTGAACGAAGTCCGTTCTGTTGTACTGGAAGAACAAGTCGTAGAT
ACTGTCCTGCAAAAGGCCACTGTGACCGATAAGCAGGTATCCTACGAAGAAGCGGTCAAGCCGGCCGAAGCT
CCGCAAGCGGCCTGA
Translation:
MQVSVESTSALERRMTVGVPAERIETEVNKRLQQTARRAKIPGFRPGKVPMSVIRQRYEASARQEAMGDLIQ
ETFYEAVVEQKLNPAGSPSVEPKSFEKGKDLEYIATFEVFPEFTVSGLEDIKVERLQAEVSDADVDNMLDVL
RKQNTRFEVVERAAQNDDQLNIDFVGKIDGEAFAGGSAKGTLLVLGSGRMIAGFEEGLVGAKAGEERVLNLT
FPEDYQNLDLANKAAEFTVTVNSVAEPKLPELNEEFFALFGVKETGLDGFRAEVQKNMERELRQAIKSKVKN
QVMEGLLQANPIEVPKALIGNEVNRLRVQAVQQFGGNIKPDQLPAELFEEQAKRRVVLGLIVAEVVKQHELK
ADEGRVREMIEEMASAYQEPEQVVAWYFKNEPQLNEVRSVVLEEQVVDTVLQKATVTDKQVSYEEAVKPAEA
PQAA*
AnnotationID:1314GeneID:1305
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 15:03:37
Gene Name:tig
Confidence Code:2
GeneProduct:trigger factor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:peptidyl-prolyl cis/trans isomerase
Functional Category Confidence Code:5
COGs:COG0544,pfam05697
Secondary Functional Category(ies):chaperones & heat shock proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67912.1|AE016423_7 (AE016782) trigger factor [Pseudomonas putida KT2440]
          Length = 443

 Score =  741 bits (1914), Expect = 0.0
 Identities = 374/436 (85%), Positives = 411/436 (94%)

>gb|AAO57196.1| (AE016869) trigger factor [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 436

 Score =  735 bits (1897), Expect = 0.0
 Identities = 372/435 (85%), Positives = 406/435 (93%)

>gb|AAF95071.1| (AE004268) trigger factor [Vibrio cholerae]
          Length = 433

 Score =  447 bits (1149), Expect = e-125
 Identities = 222/433 (51%), Positives = 313/433 (72%), Gaps = 1/433 (0%)
Structural Features:
COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 441 residues, 100.0% aligned
Score =  383 bits (985), Expect = 2e-107
Identities = 190/442 (42%), Positives = 285/442 (64%), Gaps = 12/442 (2%)

pfam05697, Trigger_N, Bacterial trigger factor protein (TF). 
CD-Length = 151 residues, 100.0% aligned
Score =  153 bits (389), Expect = 3e-38
Identities = 68/151 (45%), Positives = 100/151 (66%)
Genomic Context:
Comment:
ReferenceID:2613
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19755
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37122
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1305_cdd.html
URL:
ReferenceID:37808
Author/Investigator(s): Wasinger VC, Humphery-Smith I.
Title: Small genes/gene-products in Escherichia coli K-12.
PubMed: 9868784
MedLine:
Source:
FEMS Microbiol Lett. 1998 Dec 15;169(2):375-82.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9868784
Homologs By Global Alignment
Gene ID:1305

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
2368 PA1800_tr translation of PA1800 436 99.99 99.99 0 2164.0
75963 gb|AAG05189.1|AE004606_3 (AE004606) trigger factor [Pseudomonas aeruginosa PAO1] 436 99.99 99.99 0 2164.0
75965 gb|AAO57196.1| (AE016869) trigger factor [Pseudomonas syringae pv. tomato str. DC3000] 436 85.32 93.11 0 1895.0
75964 gb|AAN67912.1|AE016423_7 (AE016782) trigger factor [Pseudomonas putida KT2440] 443 84.42 92.77 7 1914.0
75968 gb|AAN54846.1|AE015623_8 (AE015623) trigger factor [Shewanella oneidensis MR-1] 437 51.25 72.31 4 1136.0
GC ORFID: 44307How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1800Glimmer Score:
Start: 1271897Stop: 1273207
Length: 1311
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1800 translation of PA1800Homolog Bit Score 838.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene775 (ORF: BLASTX 742.0), t_PA1800 (ORF: GLIMMER)
GC ORF Sequence
ATGCAAGTTTCTGTTGAAAGCACTTCCGCTCTTGAGCGCCGCATGACCGTTGGTGTGCCTGCCGAGCGTATC
GAGACCGAAGTCAACAAGCGTCTGCAGCAGACCGCCCGTCGTGCCAAGATTCCAGGTTTCCGCCCCGGCAAG
GTGCCGATGAGTGTCATTCGTCAGCGCTACGAAGCTTCCGCGCGCCAGGAAGCCATGGGCGATCTGATCCAG
GAAACCTTCTACGAAGCCGTGGTCGAGCAGAAGCTGAATCCGGCCGGTTCGCCGTCGGTAGAGCCCAAGTCC
TTCGAGAAAGGCAAGGACCTGGAATACATCGCAACCTTCGAAGTCTTCCCGGAATTTACCGTTTCCGGCCTG
GAAGATATCAAGGTCGAGCGCCTGCAGGCCGAAGTTTCCGATGCTGATGTCGACAACATGCTCGATGTCCTG
CGCAAGCAGAACACCCGTTTCGAAGTGGTCGAGCGTGCCGCCCAGAACGATGACCAGTTGAACATCGACTTC
GTCGGCAAGATCGACGGCGAAGCCTTCGCCGGCGGTTCCGCCAAGGGCACCCTGCTGGTGCTGGGCTCCGGT
CGCATGATCGCCGGCTTCGAAGAAGGGCTGGTGGGGGCGAAGGCCGGTGAAGAGCGCGTGCTCAACCTGACC
TTCCCCGAGGACTACCAGAACCTGGACCTGGCCAACAAGGCTGCCGAGTTCACCGTTACCGTCAATAGCGTT
GCCGAGCCCAAGCTGCCGGAACTGAACGAAGAGTTCTTCGCTCTGTTCGGCGTGAAGGAAACCGGTCTCGAT
GGCTTCCGCGCCGAAGTGCAGAAGAACATGGAGCGCGAGCTGCGCCAGGCGATCAAGTCCAAGGTCAAGAAC
CAGGTCATGGAAGGTCTGCTGCAGGCCAACCCGATCGAAGTGCCCAAGGCCCTGATCGGCAACGAAGTGAAC
CGTCTGCGCGTGCAGGCCGTCCAGCAGTTCGGTGGCAACATCAAGCCTGACCAACTGCCGGCCGAGCTGTTC
GAAGAGCAGGCCAAGCGCCGTGTGGTGCTGGGCCTGATCGTCGCCGAAGTGGTCAAGCAGCACGAGCTGAAG
GCCGACGAAGGTCGCGTTCGCGAAATGATCGAGGAAATGGCCTCGGCCTACCAGGAGCCCGAGCAGGTCGTC
GCCTGGTACTTCAAGAACGAGCCCCAGCTGAACGAAGTCCGTTCTGTTGTACTGGAAGAACAAGTCGTAGAT
ACTGTCCTGCAAAAGGCCACTGTGACCGATAAGCAGGTATCCTACGAAGAAGCGGTCAAGCCGGCCGAAGCT
CCGCAAGCGGCCTGA