ViewGene
Locus Name:
GeneID:
Location:

GeneID:1304
TrivialName: PA14_41270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41270
PAO1 Ortholog Locus:PA1798
Sequence Length:1287
Protein Length:428
Start: 3682952
Stop: 3684238
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05187.1|AE004606_1 (AE004606) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 427/428 (99%), Positives = 427/428 (99%)
Sequence:
ATGCTGCGCCTGTTCCTGCGCCTCTACCTGCTGCTGGCCCTGGGGTTCGCTGCCGCGATCTTCGTGGTCGAC
CATGTCATCGACGCGTTCTACGACAGCATCGTCGAGAACTATCACCGCGACGCCGTTCGCGGCCAGGCCTAT
TCGCTGGTGGAAAAGCTGGCCCCGCTGGACCAGGCCGGACGCCAGCGACAGCTCGAAGACTGGCGTCCCCAC
TACGGGCTCGAGCTGAGCCTGACGGATGCCAGGCAGGCGAAGCTGACGCAGGAAGAGCAGGCCCTCCTCGAC
AAGAACCTGCTGGTGGTACGCGAGGACTTTACGGAATTCATCAGCCGCATCGACGCGGGTCCGCAGCTGCTC
GACATCAAGCTGCCGCCGGAACCCTCGCTGACCCCACTGTTCACCGTGCTGGCCTACATCCTGCTCGGCGTG
CTGGTCGGCATCGCCCTGCTGGTATGGGTCCGCCCGCACTGGCGCGACCTCGAGACCCTGCGCCTGGCCGCG
CAACGCTTCGGCGATGGCGACCTGTCATCGCGCACGCGCATTTTCCGACGCTCCGATATCCGCACCCTGGCC
CAGCACTTCAACCAGATGGCCGACCGCATCGAAAGCCTGATCAGCAACCAGCGCGAACTGACCAACGCGGTA
TCCCACGAATTGCGCACGCCGATCTCCCGCCTGTCCTTCGAACTCGAGCAATTGAACAAGCAGGTCGACGCC
GAAGTACGCCACGACCTGATAGAGGACATGCGCGCCGACCTCGGCGAACTGGAGGAAATGGTCTCCGAACTG
CTGACCTACGCCCGCCTGGAGCACGGCAACGTCGGGAGCCACCGGGAAATCGTCGACGCCGCGAGCTGGCTG
GATAGCGTCGTCGCCGACGTCGCCCTGGAAGCCGAAGCCGCCGGAGTCACCTGCGAGATCAGCGCCTGCCAG
GTCGAACAGATCCGCATCGAGCCTCGCTTCATGGCGCGCGCCGTGATCAACCTGCTGCGCAACGCCATTCGC
CACGCACACTCGCGCGTCGAAATCGCCCTCCTCGATCAAGGCGACAGCTGTCAGATACGGGTCAACGACGAC
GGCCCCGGGATACCGGCGGACGCCCGGCAGAAGATCTTCGAACCCTTTTCGCGCCTGGACGACAGCCGCGAT
CGCAGCACCGGCGGCTTCGGCCTGGGCCTGGCGATCGTCCGCCGGGTCGCGCAATGGCACGGCGGCTATGCG
GAAGCGCTGGAAACGCCGCAGGGAGGCGCCTCCTTCCGCCTGACCTGGGAGCGGCCCCGTTGA
Translation:
MLRLFLRLYLLLALGFAAAIFVVDHVIDAFYDSIVENYHRDAVRGQAYSLVEKLAPLDQAGRQRQLEDWRPH
YGLELSLTDARQAKLTQEEQALLDKNLLVVREDFTEFISRIDAGPQLLDIKLPPEPSLTPLFTVLAYILLGV
LVGIALLVWVRPHWRDLETLRLAAQRFGDGDLSSRTRIFRRSDIRTLAQHFNQMADRIESLISNQRELTNAV
SHELRTPISRLSFELEQLNKQVDAEVRHDLIEDMRADLGELEEMVSELLTYARLEHGNVGSHREIVDAASWL
DSVVADVALEAEAAGVTCEISACQVEQIRIEPRFMARAVINLLRNAIRHAHSRVEIALLDQGDSCQIRVNDD
GPGIPADARQKIFEPFSRLDDSRDRSTGGFGLGLAIVRRVAQWHGGYAEALETPQGGASFRLTWERPR*
AnnotationID:1313GeneID:1304
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 13:01:17
Gene Name:
Confidence Code:3
GeneProduct:putative two-component sensor
Cell Localization:()
Synonyms:PA1798
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0642,cd00075
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO43104.1| (AY212250) sensor kinase RpeA [Pseudomonas chlororaphis]
          Length = 433

 Score =  259 bits (662), Expect = 2e-68
 Identities = 167/437 (38%), Positives = 250/437 (57%), Gaps = 15/437 (3%)

>gb|AAN69055.1|AE016538_4 (AE016786) sensor protein RstB, putative [Pseudomonas putida
           KT2440]
          Length = 433

 Score =  257 bits (656), Expect = 1e-67
 Identities = 166/432 (38%), Positives = 248/432 (57%), Gaps = 15/432 (3%)








 
Structural Features:
COG0642, BaeS, Signal transduction histidine kinase 
[Signal transduction mechanisms]
CD-Length = 336 residues,  97.0% aligned
Score =  140 bits (352), Expect = 3e-34
Identities = 92/332 (27%), Positives = 156/332 (46%), Gaps = 9/332 (2%)

cd00075, HATPase_c, Histidine kinase-like ATPases
CD-Length = 103 residues, 100.0% aligned
Score = 96.2 bits (239), Expect = 7e-21
Identities = 46/105 (43%), Positives = 66/105 (62%), Gaps = 5/105 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2611




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1304_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1304
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2367
                           PA1798_tr
                           translation of PA1798
                           428
                           99.76
                           99.76
                           0
                           2166.0
     

     
     
75961
                           gb|AAG05187.1|AE004606_1
                           (AE004606) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           428
                           99.76
                           99.76
                           0
                           2166.0
     

     
     
75962
                           emb|CAA53208.1|
                           (X75466) unnamed protein product [Escherichia coli]
                           429
                           17.71
                           23.07
                           257
                           329.0
     

     






      

          
GC ORFID: 44306How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1798Glimmer Score: 

          
Start: 1270957Stop: 1269671

          
Length: 1287


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1798 translation of PA1798Homolog Bit Score 838.0

          
Other Homologs:  t_PA1798 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGCGCCTGTTCCTGCGCCTCTACCTGCTGCTGGCCCTGGGGTTCGCTGCCGCGATCTTCGTGGTCGAC 
CATGTCATCGACGCGTTCTACGACAGCATCGTCGAGAACTATCACCGCGACGCCGTTCGCGGCCAGGCCTAT 
TCGCTGGTGGAAAAGCTGGCCCCGCTGGACCAGGCCGGACGCCAGCGACAGCTCGAAGACTGGCGTCCCCAC 
TACGGGCTCGAGCTGAGCCTGACGGATGCCAGGCAGGCGAAGCTGACGCAGGAAGAGCAGGCCCTCCTCGAC 
AAGAACCTGCTGGTGGTACGCGAGGACTTTACGGAATTCATCAGCCGCATCGACGCGGGTCCGCAGCTGCTC 
GACATCAAGCTGCCGCCGGAACCCTCGCTGACCCCACTGTTCACCGTGCTGGCCTACATCCTGCTCGGCGTG 
CTGGTCGGCATCGCCCTGCTGGTATGGGTCCGCCCGCACTGGCGCGACCTCGAGACCCTGCGCCTGGCCGCG 
CAACGCTTCGGCGATGGCGACCTGTCATCGCGCACGCGCATTTTCCGACGCTCCGATATCCGCACCCTGGCC 
CAGCACTTCAACCAGATGGCCGACCGCATCGAAAGCCTGATCAGCAACCAGCGCGAACTGACCAACGCGGTA 
TCCCACGAATTGCGCACGCCGATCTCCCGCCTGTCCTTCGAACTCGAGCAATTGAACAAGCAGGTCGACGCC 
GAAGTACGCCACGACCTGATAGAGGACATGCGCGCCGACCTCGGCGAACTGGAGGAAATGGTCTCCGAACTG 
CTGACCTACGCCCGCCTGGAGCACGGCAACGTCGGGAGCCACCGGGAAATCGTCGACGCCGCGAGCTGGCTG 
GATAGCGTCGTCGCCGACGTCGCCCTGGAAGCCGAAGCCGCCGGAGTCACCTGCGAGATCAGCGCCTGCCAG 
GTCGAACAGATCCGCATCGAGCCTCGCTTCATGGCGCGCGCCGTGATCAACCTGCTGCGCAACGCCATTCGC 
CACGCACACTCGCGCGTCGAAATCGCCCTCCTCGATCAAGGCGACAGCTGTCAGATACGGGTCAACGACGAC 
GGCCCCGGGATACCGGCGGACGCCCGGCAGAAGATCTTCGAACCCTTTTCGCGCCTGGACGACAGCCGCGAT 
CGCAGCACCGGCGGCTTCGGCCTGGGCCTGGCGATCGTCCGCCGGGTCGCGCAATGGCACGGCGGCTATGCG 
GAAGCGCTGGAAACGCCGCAGGGAGGCGCCTCCTTCCGCCTGACCTGGGAGCGGCCCCGTTGA