ViewGene
Locus Name:
GeneID:
Location:

GeneID:1302
TrivialName: PA14_47860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47860
PAO1 Ortholog Locus:PA1266
Sequence Length:1254
Protein Length:417
Start: 4258499
Stop: 4259752
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04655.1|AE004556_5 (AE004556) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 412/417 (98%), Positives = 414/417 (99%)
Sequence:
ATGAGCGCCGACTACGACCTGCTGATCGTCGGTGCCGGCCCCGCCGGCCTGGCCGCAGCGCTGGCCGCCGCG
CCGAGCGGCGCGCGCATCGCCCTGGTCGACGACAACCCGGCCGCCGGCGGACAGATCTGGCGCGACGGCCCG
CGTGCCAGCCTGCCGCCGCGTGCCCATCAGATGCGTCAACGCCTGGCCGGGCAGGCCAATGTCGAGTACCTC
CCGGCGACCCGGGTGGTCGCCTGCGGTCCCGGCAGGCGCCTGTTGCTGGAAGACCCGCAACGTGGCTGGCAG
GTCGGCTACCGACGCCTGGTCCTCTGCACCGGCGCCCGCGAACTGCTGCTGCCTTTTCCCGGCTGGACCCTC
CCCGGCGTCACCGGCGCCGGCGGCCTGCAGGCGTTGGCCAAGGGCGGCCTGCCACTGGCCGGCCAGCGCCTA
GTGGTGGCTGGCTCCGGCCCGCTGCTGCTGGCCAGCGCCGCCAGCGCCAGCCAGTGCGGGGCGCGCCTGCTG
CGCGTCGCCGAACAGGCGCCGGCGAGAACCCTGGCCGCCTTCGCCGTACGCCTGCCGCGCTGGCCCGGTAAG
CTGTGGCAGGCCGCCGGCCTGTTCGCCCGTAGCTACCGCGCCGACAGCTACGTGCTCGCCGCCCTCGGCGAG
GAGCGCCTGGAAGCCGTGCGCCTGCGCGAAGGCGGTCGGGTCCGCGAGATCGCCTGCGAACGCCTGGCCTGC
GGCTTCGGCCTGGCGCCCAACGTGCAACTCGGCCAGGCCCTTGGCTATCGCCTCGACGGCCAGGCGCTCGCC
GTCGACGAATGGCAGGCCGGCAGCCTGCCCGACCACTACGCCGCCGGCGAATGCACCGGCTTCGGCGGCAGC
GAACTGGCCCTGGTGGAAGGCGCCATCGCCGGCCATGCCGCCGTCGACGAGCGCGACGCGGCTCGCCGCCTG
TGGCCACGACGGCGACGCTGGCAGGGCTTCGCCGACACCCTGGCGCGACACTTCGCCCTGCGTGCCGAACTG
CGTGAACTGGCGGAGGCGGATACCCTGGTCTGCCGTTGCGAAGACGTCCCCTTGGCCGCGCTGGCCGGGCAT
GCCGGCTGGACCGAGGCCAAGCTGCACAGCCGTTGCGGCATGGGCGCCTGCCAGGGGCGGATATGCGGCAGC
GCCGCGCAATTCCTGTTCGGCTGGACGCCTCCGGCGCCGCGTCCGCCGTTCAGCCCGGCGCGCCTGGAGACC
CTGGCCCGCTGGCAGGGCGACGCCGGCTAG
Translation:
MSADYDLLIVGAGPAGLAAALAAAPSGARIALVDDNPAAGGQIWRDGPRASLPPRAHQMRQRLAGQANVEYL
PATRVVACGPGRRLLLEDPQRGWQVGYRRLVLCTGARELLLPFPGWTLPGVTGAGGLQALAKGGLPLAGQRL
VVAGSGPLLLASAASASQCGARLLRVAEQAPARTLAAFAVRLPRWPGKLWQAAGLFARSYRADSYVLAALGE
ERLEAVRLREGGRVREIACERLACGFGLAPNVQLGQALGYRLDGQALAVDEWQAGSLPDHYAAGECTGFGGS
ELALVEGAIAGHAAVDERDAARRLWPRRRRWQGFADTLARHFALRAELRELAEADTLVCRCEDVPLAALAGH
AGWTEAKLHSRCGMGACQGRICGSAAQFLFGWTPPAPRPPFSPARLETLARWQGDAG*
AnnotationID:1311GeneID:1302
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 13:01:57
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1266
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00070
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM37399.1| (AE011895) oxidoreductase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 437

 Score =  374 bits (960), Expect = e-103
 Identities = 216/421 (51%), Positives = 267/421 (63%), Gaps = 18/421 (4%)








 
Structural Features:
pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase.
CD-Length = 288 residues,  97.9% aligned
Score = 95.4 bits (237), Expect = 1e-20
Identities = 82/294 (27%), Positives = 125/294 (42%), Gaps = 25/294 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2607




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19749




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37523




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1302_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1302
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2365
                           PA1266_tr
                           translation of PA1266
                           417
                           98.80
                           99.28
                           0
                           2165.0
     

     
     
75944
                           gb|AAG04655.1|AE004556_5
                           (AE004556) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           417
                           98.80
                           99.28
                           0
                           2165.0
     

     
     
75945
                           gb|AAM37399.1|
                           (AE011895) oxidoreductase [Xanthomonas axonopodis pv. citri str. 306]
                           440
                           49.31
                           61.36
                           26
                           968.0
     

     
     
75947
                           gb|AAM41690.1|
                           (AE012352) oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           448
                           48.21
                           61.16
                           35
                           947.0
     

     
     
75946
                           emb|CAE14533.1|
                           (BX571866) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           434
                           47.00
                           59.90
                           21
                           957.0
     

     






      

          
GC ORFID: 44304How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1266Glimmer Score: 

          
Start: 695410Stop: 694157

          
Length: 1254


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1266 translation of PA1266Homolog Bit Score 838.0

          
Other Homologs:  t_PA1266 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCGACTACGACCTGCTGATCGTCGGTGCCGGCCCCGCCGGCCTGGCCGCAGCGCTGGCCGCCGCG 
CCGAGCGGCGCGCGCATCGCCCTGGTCGACGACAACCCGGCCGCCGGCGGACAGATCTGGCGCGACGGCCCG 
CGTGCCAGCCTGCCGCCGCGTGCCCATCAGATGCGTCAACGCCTGGCCGGGCAGGCCAATGTCGAGTACCTC 
CCGGCGACCCGGGTGGTCGCCTGCGGTCCCGGCAGGCGCCTGTTGCTGGAAGACCCGCAACGTGGCTGGCAG 
GTCGGCTACCGACGCCTGGTCCTCTGCACCGGCGCCCGCGAACTGCTGCTGCCTTTTCCCGGCTGGACCCTC 
CCCGGCGTCACCGGCGCCGGCGGCCTGCAGGCGTTGGCCAAGGGCGGCCTGCCACTGGCCGGCCAGCGCCTA 
GTGGTGGCTGGCTCCGGCCCGCTGCTGCTGGCCAGCGCCGCCAGCGCCAGCCAGTGCGGGGCGCGCCTGCTG 
CGCGTCGCCGAACAGGCGCCGGCGAGAACCCTGGCCGCCTTCGCCGTACGCCTGCCGCGCTGGCCCGGTAAG 
CTGTGGCAGGCCGCCGGCCTGTTCGCCCGTAGCTACCGCGCCGACAGCTACGTGCTCGCCGCCCTCGGCGAG 
GAGCGCCTGGAAGCCGTGCGCCTGCGCGAAGGCGGTCGGGTCCGCGAGATCGCCTGCGAACGCCTGGCCTGC 
GGCTTCGGCCTGGCGCCCAACGTGCAACTCGGCCAGGCCCTTGGCTATCGCCTCGACGGCCAGGCGCTCGCC 
GTCGACGAATGGCAGGCCGGCAGCCTGCCCGACCACTACGCCGCCGGCGAATGCACCGGCTTCGGCGGCAGC 
GAACTGGCCCTGGTGGAAGGCGCCATCGCCGGCCATGCCGCCGTCGACGAGCGCGACGCGGCTCGCCGCCTG 
TGGCCACGACGGCGACGCTGGCAGGGCTTCGCCGACACCCTGGCGCGACACTTCGCCCTGCGTGCCGAACTG 
CGTGAACTGGCGGAGGCGGATACCCTGGTCTGCCGTTGCGAAGACGTCCCCTTGGCCGCGCTGGCCGGGCAT 
GCCGGCTGGACCGAGGCCAAGCTGCACAGCCGTTGCGGCATGGGCGCCTGCCAGGGGCGGATATGCGGCAGC 
GCCGCGCAATTCCTGTTCGGCTGGACGCCTCCGGCGCCGCGTCCGCCGTTCAGCCCGGCGCGCCTGGAGACC 
CTGGCCCGCTGGCAGGGCGACGCCGGCTAG