ViewGene
Locus Name:
GeneID:
Location:

GeneID:130
TrivialName: PA14_01100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01100
PAO1 Ortholog Locus:PA0090
Sequence Length:2709
Protein Length:902
Start: 105874
Stop: 108582
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03480.1|AE004447_13 (AE004447) probable ClpA/B-type chaperone [Pseudomonas aeruginosa PAO1]
Identities = 899/902 (99%), Positives = 900/902 (99%)
Sequence:
ATGAGTGAGATCAGTCGCGTTGCGCTGTTCGGCAagCTGAACAGCCTGgcctacaaggccatCGAGGCCGCC
ACGGTATTCTGCAAGCTGCGCGGCAATCCCTATGTCGAGCTGGTGCACTGGTTCCACCAGATCCTCCAGTTG
CCGGACTCGGACCTGCACCAGATCGTCCGCCAGTCCGGGATCGACCCGGCGCGCCTGGCCAAGGACCTGACC
GAGGCCCTCGACCGTCTGCCGCGCGGCTCGACCTCGATCACCGACCTGTCCTCCCATGTCGAGGAAGCGGTG
GAGCGCGGCTGGGTCTACGGCAGCCTGATGTTCGGCGAGAGCCAGGTGCGCACCGGCTACCTGGTGATCGGC
ATCCTCAAGACGCCGAGCCTGCGCCATGCCCTCACCGGGCTGTCGGCGGAATTCGCCAAGCTCAAGGTCGAG
GCGCTCACCGAGCGCTTCGACGAGTACGTCGGCGCCTCGCCGGAGAACGGCCTGTCGGCCAGCGACGGCTTC
AACGCCGGCGCCGCCCCGGGCGAGGCCAGCGGCGCCCTGGCGCCGAGCGCGATGGGCAAGCAGGAGGCGCTC
AAGCGCTTTACCGTGGACCTCACCGAGCAGGCCCGTAGCGGCAAGCTCGACCCCATCGTCGGGCGTGACGAG
GAGATCCGCCAGTTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGATCCTCACCGGCGAGGCCGGC
GTCGGCAAGACCGCGGTGGTGGAAGGCTTCGCCCTGCGCATCGTCGCCGGCGACGTCCCGCCGGCGCTGAAG
GACGTCGAACTGCGCGCCCTCGACGTCGGCCTGCTGCAGGCCGGGGCGAGCATGAAGGGCGAGTTCGAGCAG
CGCCTGCGCCAGGTGATCGAAGACGTGCAGAGTTCCGAGAAGCCGATCATCCTGTTCATCGACGAAGCCCAC
ACCCTGGTCGGCGCCGGTGGCGCGGCCGGCACCGGCGACGCCGCCAACCTGCTCAAGCCGGCCCTGGCGCGC
GGCACCCTGCGCACCGTGGCGGCGACCACCTGGGCCGAGTACAAGAAGCACATCGAGAAGGACCCGGCGCTG
ACCCGGCGTTTCCAGGTGGTGCAGGTGGACGAGCCGTCCGAGCACAAGGCCATCCTGATGATGCGCGGCGTC
GCGTCGACCATGGAGAAGCACCACCAGGTGCAGATCCTCGACGAGGCGCTGGAGGCGGCGGTCCGGCTGTCG
CACCGCTACATCCCGGCGCGCCAGCTGCCGGACAAGTCGGTGAGCCTGCTGGATACCGCCTGCGCGCGCACC
GCCATCAGCCTGCACGCGGTGCCGGCCGAGGTCGACGATAGCCGCCGGCGCATCGAGGCGCTGGAAACCGAG
CTGGCGATCATCCGCCGCGAGAGCGCCATCGGCGTCGCCACCGCCGAACGCCAGCGCAACGCCGAGACCCTG
CTGGCCGAGGAGCGCGAGCGCCTGGCCGCCCTGGAGCAGCGCTGGGCCGAGGAAAAACGCCTGGTCGACGAA
CTGCTGGAGACCCGCGCCCGTCTGCGCGCCGCCGCCGAAGCGGTGGACGCCGGCGGCGCGCCGCTGGGCGAA
GGCGAGGCGCGTCTCGACGAGGAACAGCGCCAGGCGCTGCATGCGCGGCTGGCCGAACTGCAGGCGCAACTG
AGCGCGTTGCAGGGCGAAGAGCCGCTGATCCTGCCGACCGTGGACTACCAGGCGGTGGCCTCGGTGGTCGCC
GACTGGACCGGCATCCCGGTCGGCCGCATGGCGCGCAACGAGATCGACACCGTGCTCAACCTCGACCGGCAC
CTGAAGAAGCGCATCATCGGCCAGGACCACGCGCTGGAGATGATCGCCAAGCGCATCCAGACTTCCCGCGCC
GGCCTCGACAACCCGAGCAAGCCGATCGGCGTGTTCATGCTCGCCGGCACCTCCGGGGTGGGCAAGACCGAG
ACCGCGCTGGCGCTGGCCGAGGCCATGTACGGCGGCGAGCAGAATGTCATCACCATCAACATGAGCGAGTTC
CAGGAAGCCCACACCGTCTCCACCCTCAAGGGCGCCCCGCCCGGCTACATCGGCTACGGCGAGGGTGGCGTG
CTGACCGAGGCGGTGCGTCGCAAGCCCTACAGCGTGGTGCTGCTGGATGAAGTGGAGAAGGCCCACCCGGAT
GTCCACGAGATCTTCTTCCAGGTCTTCGACAAGGGCGTGATGGAGGACGGCGAAGGCCGGGTGATCGACTTC
AAGAACACCCTGATCCTGCTCACCACCAACGCCGGCACCGAGATGATCGCCAGCCTCTGCGCCGATCCGGAA
CTGATGCCCGAGCCGGAAGCCATCGCCAAGTCGCTGCGCGAACCGCTGCTGAAGATCTTCCCGCCGGCGCTG
CTCGGCCGCCTGGTGACCATCCCCTACTACCCGCTCAGCGACGACATGCTCAAGGCCATCTCGCGCCTGCAA
CTGGGGCGGATCAAGAAGCGCGTGGAGGCGACCCACAAGGTGCCGTTCGAGTTCGACGAGGGCGTCGTCGAC
CTGATCGTCTCGCGCTGCACCGAGACCGAGAGCGGCGGCCGGATGATCGACGCGATCCTCACCAACACGCTG
TTGCCGGACATGAGCCGCGAGTTCCTCACCCGCATGCTCGAAGGCAAGCCGTTGGCCGGGGTACGTATCAGT
AGCCGCGACAACCAGTTCCACTACGACTTCGCCGAGGCCGAGTGA
Translation:
MSEISRVALFGKLNSLAYKAIEAATVFCKLRGNPYVELVHWFHQILQLPDSDLHQIVRQSGIDPARLAKDLT
EALDRLPRGSTSITDLSSHVEEAVERGWVYGSLMFGESQVRTGYLVIGILKTPSLRHALTGLSAEFAKLKVE
ALTERFDEYVGASPENGLSASDGFNAGAAPGEASGALAPSAMGKQEALKRFTVDLTEQARSGKLDPIVGRDE
EIRQLVDILMRRRQNNPILTGEAGVGKTAVVEGFALRIVAGDVPPALKDVELRALDVGLLQAGASMKGEFEQ
RLRQVIEDVQSSEKPIILFIDEAHTLVGAGGAAGTGDAANLLKPALARGTLRTVAATTWAEYKKHIEKDPAL
TRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHRYIPARQLPDKSVSLLDTACART
AISLHAVPAEVDDSRRRIEALETELAIIRRESAIGVATAERQRNAETLLAEERERLAALEQRWAEEKRLVDE
LLETRARLRAAAEAVDAGGAPLGEGEARLDEEQRQALHARLAELQAQLSALQGEEPLILPTVDYQAVASVVA
DWTGIPVGRMARNEIDTVLNLDRHLKKRIIGQDHALEMIAKRIQTSRAGLDNPSKPIGVFMLAGTSGVGKTE
TALALAEAMYGGEQNVITINMSEFQEAHTVSTLKGAPPGYIGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPD
VHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTEMIASLCADPELMPEPEAIAKSLREPLLKIFPPAL
LGRLVTIPYYPLSDDMLKAISRLQLGRIKKRVEATHKVPFEFDEGVVDLIVSRCTETESGGRMIDAILTNTL
LPDMSREFLTRMLEGKPLAGVRISSRDNQFHYDFAEAE*
AnnotationID:140GeneID:130
AnnotatorUID: diggins
Modification Date/Time: 2004-07-26 17:05:20
Gene Name:
Confidence Code:3
GeneProduct:putative ClpA/B-type chaperone
Cell Localization:()
Synonyms:clpB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0542
Secondary Functional Category(ies):chaperones and heat shock protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM38975.1| (AE012064) ClpB [Xanthomonas axonopodis pv. citri str. 306]
          Length = 926

 Score = 1321 bits (3420), Expect = 0.0
 Identities = 677/916 (73%), Positives = 770/916 (84%), Gaps = 21/916 (2%)

>dbj|BAB49489.1| (AP002999) probable ClpA/B-type protease [Mesorhizobium loti]
          Length = 945

 Score = 1035 bits (2675), Expect = 0.0
 Identities = 544/944 (57%), Positives = 678/944 (71%), Gaps = 62/944 (6%)

>emb|CAE31309.1| (BX640439) putative ATPase with chaperone activity [Bordetella
           bronchiseptica]
          Length = 869

 Score = 1026 bits (2652), Expect = 0.0
 Identities = 533/900 (59%), Positives = 652/900 (72%), Gaps = 34/900 (3%)






 
Structural Features:
COG0542, ClpA, ATPases with chaperone activity, ATP-binding subunit 
[Posttranslational modification, protein turnover, chaperones]








   
Genomic Context:






   
Comment:


















    ReferenceID:263




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17405




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33441




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:130_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:130
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
241
                           PA0090_tr
                           translation of PA0090
                           902
                           99.66
                           99.77
                           0
                           4499.0
     

     
     
17037
                           gb|AAG03480.1|AE004447_13
                           (AE004447) probable ClpA/B-type chaperone [Pseudomonas aeruginosa PAO1]
                           902
                           99.66
                           99.77
                           0
                           4499.0
     

     
     
17038
                           gb|AAM38975.1|
                           (AE012064) ClpB [Xanthomonas axonopodis pv. citri str. 306]
                           929
                           72.87
                           82.99
                           30
                           3433.0
     

     
     
17040
                           emb|CAE31309.1|
                           (BX640439) putative ATPase with chaperone activity [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           904
                           58.96
                           72.12
                           37
                           2674.0
     

     
     
17041
                           emb|CAE40133.1|
                           (BX640425) putative ATPase with chaperone activity [Bordetella parapertussis]
                           904
                           58.84
                           72.23
                           49
                           2650.0
     

     






      

          
GC ORFID: 43132How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0090Glimmer Score: 

          
Start: 5907213Stop: 5909921

          
Length: 2709


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0090 translation of PA0090Homolog Bit Score 1737.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2306 (ORF: BLASTX 881.0), t_PA1662 (ORF: BLASTX 683.0), t_PA0090 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGAGATCAGTCGCGTTGCGCTGTTCGGCAagCTGAACAGCCTGgcctacaaggccatCGAGGCCGCC 
ACGGTATTCTGCAAGCTGCGCGGCAATCCCTATGTCGAGCTGGTGCACTGGTTCCACCAGATCCTCCAGTTG 
CCGGACTCGGACCTGCACCAGATCGTCCGCCAGTCCGGGATCGACCCGGCGCGCCTGGCCAAGGACCTGACC 
GAGGCCCTCGACCGTCTGCCGCGCGGCTCGACCTCGATCACCGACCTGTCCTCCCATGTCGAGGAAGCGGTG 
GAGCGCGGCTGGGTCTACGGCAGCCTGATGTTCGGCGAGAGCCAGGTGCGCACCGGCTACCTGGTGATCGGC 
ATCCTCAAGACGCCGAGCCTGCGCCATGCCCTCACCGGGCTGTCGGCGGAATTCGCCAAGCTCAAGGTCGAG 
GCGCTCACCGAGCGCTTCGACGAGTACGTCGGCGCCTCGCCGGAGAACGGCCTGTCGGCCAGCGACGGCTTC 
AACGCCGGCGCCGCCCCGGGCGAGGCCAGCGGCGCCCTGGCGCCGAGCGCGATGGGCAAGCAGGAGGCGCTC 
AAGCGCTTTACCGTGGACCTCACCGAGCAGGCCCGTAGCGGCAAGCTCGACCCCATCGTCGGGCGTGACGAG 
GAGATCCGCCAGTTGGTGGACATCCTCATGCGCCGCCGGCAGAACAACCCGATCCTCACCGGCGAGGCCGGC 
GTCGGCAAGACCGCGGTGGTGGAAGGCTTCGCCCTGCGCATCGTCGCCGGCGACGTCCCGCCGGCGCTGAAG 
GACGTCGAACTGCGCGCCCTCGACGTCGGCCTGCTGCAGGCCGGGGCGAGCATGAAGGGCGAGTTCGAGCAG 
CGCCTGCGCCAGGTGATCGAAGACGTGCAGAGTTCCGAGAAGCCGATCATCCTGTTCATCGACGAAGCCCAC 
ACCCTGGTCGGCGCCGGTGGCGCGGCCGGCACCGGCGACGCCGCCAACCTGCTCAAGCCGGCCCTGGCGCGC 
GGCACCCTGCGCACCGTGGCGGCGACCACCTGGGCCGAGTACAAGAAGCACATCGAGAAGGACCCGGCGCTG 
ACCCGGCGTTTCCAGGTGGTGCAGGTGGACGAGCCGTCCGAGCACAAGGCCATCCTGATGATGCGCGGCGTC 
GCGTCGACCATGGAGAAGCACCACCAGGTGCAGATCCTCGACGAGGCGCTGGAGGCGGCGGTCCGGCTGTCG 
CACCGCTACATCCCGGCGCGCCAGCTGCCGGACAAGTCGGTGAGCCTGCTGGATACCGCCTGCGCGCGCACC 
GCCATCAGCCTGCACGCGGTGCCGGCCGAGGTCGACGATAGCCGCCGGCGCATCGAGGCGCTGGAAACCGAG 
CTGGCGATCATCCGCCGCGAGAGCGCCATCGGCGTCGCCACCGCCGAACGCCAGCGCAACGCCGAGACCCTG 
CTGGCCGAGGAGCGCGAGCGCCTGGCCGCCCTGGAGCAGCGCTGGGCCGAGGAAAAACGCCTGGTCGACGAA 
CTGCTGGAGACCCGCGCCCGTCTGCGCGCCGCCGCCGAAGCGGTGGACGCCGGCGGCGCGCCGCTGGGCGAA 
GGCGAGGCGCGTCTCGACGAGGAACAGCGCCAGGCGCTGCATGCGCGGCTGGCCGAACTGCAGGCGCAACTG 
AGCGCGTTGCAGGGCGAAGAGCCGCTGATCCTGCCGACCGTGGACTACCAGGCGGTGGCCTCGGTGGTCGCC 
GACTGGACCGGCATCCCGGTCGGCCGCATGGCGCGCAACGAGATCGACACCGTGCTCAACCTCGACCGGCAC 
CTGAAGAAGCGCATCATCGGCCAGGACCACGCGCTGGAGATGATCGCCAAGCGCATCCAGACTTCCCGCGCC 
GGCCTCGACAACCCGAGCAAGCCGATCGGCGTGTTCATGCTCGCCGGCACCTCCGGGGTGGGCAAGACCGAG 
ACCGCGCTGGCGCTGGCCGAGGCCATGTACGGCGGCGAGCAGAATGTCATCACCATCAACATGAGCGAGTTC 
CAGGAAGCCCACACCGTCTCCACCCTCAAGGGCGCCCCGCCCGGCTACATCGGCTACGGCGAGGGTGGCGTG 
CTGACCGAGGCGGTGCGTCGCAAGCCCTACAGCGTGGTGCTGCTGGATGAAGTGGAGAAGGCCCACCCGGAT 
GTCCACGAGATCTTCTTCCAGGTCTTCGACAAGGGCGTGATGGAGGACGGCGAAGGCCGGGTGATCGACTTC 
AAGAACACCCTGATCCTGCTCACCACCAACGCCGGCACCGAGATGATCGCCAGCCTCTGCGCCGATCCGGAA 
CTGATGCCCGAGCCGGAAGCCATCGCCAAGTCGCTGCGCGAACCGCTGCTGAAGATCTTCCCGCCGGCGCTG 
CTCGGCCGCCTGGTGACCATCCCCTACTACCCGCTCAGCGACGACATGCTCAAGGCCATCTCGCGCCTGCAA 
CTGGGGCGGATCAAGAAGCGCGTGGAGGCGACCCACAAGGTGCCGTTCGAGTTCGACGAGGGCGTCGTCGAC 
CTGATCGTCTCGCGCTGCACCGAGACCGAGAGCGGCGGCCGGATGATCGACGCGATCCTCACCAACACGCTG 
TTGCCGGACATGAGCCGCGAGTTCCTCACCCGCATGCTCGAAGGCAAGCCGTTGGCCGGGGTACGTATCAGT 
AGCCGCGACAACCAGTTCCACTACGACTTCGCCGAGGCCGAGTGA