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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06660.1|AE004749_9 (AE004749) probable ATP-dependent DNA helicase [Pseudomonas aeruginosa PAO1]
Identities = 1439/1448 (99%), Positives = 1443/1448 (99%)
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Sequence:
ATGCCTATTTCATCCTCTTCCGCCCGCCGCGCCGAGCCGGCTCCGCGGCCCCTGGCGGAGTTCCATCCCGCC
GTCCGCCAGTGGTTCGAACGCCACTTCGCCGCGCCCACGCCGGCCCAGGTCGAGGCCTGGCCGGCGATCCGC
GAGGGGCTTTCGACCCTGGTCGCCGCGCCCACCGGTTCGGGCAAGACCCTGACCGCCTTCCTCGCCGCCATC
GATGCCCTGGTGGTAGAGGGGCTGGCCGCCGGCGGCGAGCTGGCGGATGCCACCCAGGTAGTCTATGTCTCG
CCGCTGAAAGCGCTGTCCAACGACATCCGCATCAACCTGGAGCAACCGCTGGCCGGCATCCGCGAGGAACTG
GCGCGTCTCGGCCTGCCCGACGTCGATATCCGTAGCGCGGTGCGCACCGGCGATACGCCGCAGGTCGAACGC
GGAGCGATGCGCAAGCGCCCGCCGCACATCCTGGTCACCACGCCCGAATCGCTGTACATCCTGCTCGGCTCG
GAGTCGGGCCGGCAGATGCTCGCCGGGGTGCGCAGCGTGATCGTCGACGAGATCCATGCCCTGGCCGGCAGC
AAGCGCGGCAGCCACCTGGCGCTGTCGCTGGAGCGCCTGCAGGCGCTGTGTCCGCGACCGCTGCTGCGGATC
GGGCTGTCCGCCACGCAGAAACCGATCGAGAAGGTCGCGCGCTTCCTCGTCGGCGCCAGCGGCAATCCGCGC
GATCCGGCCTGCCGGATCGTCGACATCGGCTATACGCGCCCCCGCGACCTGGGCATCGAGGTACCGCCGGTG
GCGCTGGAAGCGGTGATGTCCAACGACACCTGGGAGCTGGTCTACGACCGCCTGGCGCACCTGGCCGGCGAG
CACCGCACCACCCTGGTGTTCGTCAACACCCGGCGCATGGCCGAGCGGGTCACCCGCTTCCTCGCCGAACGC
CTCGGCAGCCGCCAGGTGGCGGCCCACCACGGCAGCCTGGCCAAGGAGCTGCGCCTGGATGCCGAGCAGCGC
CTCAAGGCCGGGCAATTGAAGGTACTGGTGGCGACCGCCTCGCTGGAGCTGGGCATCGATATCGGCGACGTC
GAGCTGGTCTGCCAGTTGTCGTCGCCGCGCTCCATCGCCGCCTTCCTGCAACGGGTCGGGCGTTCCGGGCAC
AGCGTCGGCGGCACCCCCAAGGGCCGGTTGTTCCCGACCTCCCGCGACGACCTGGTGGAATGCGCGGCGCTG
CTCGACAGCGTGCGCCGTGGCGAGCTGGACAGCCTGGTGCTGCCACGCCAGCCGCTGGACGTGCTGGCGCAG
CAGATCGTCGCCGAAGTGGCCTGCCAGGAGTGGCGCGAGGACGACCTCTATCGCCTGGTGATCCGCGCCGAG
CCCTACGCCGGGCTGGAGCGCGAGCGCTTCGACGAAGTCCTGCGGATGCTCGCCGAGGGCTACCACTCACGC
CTCGGCGTGCGCGGCGCCTATCTCCATCGCGATGCGCTCAACGGCCtGctccgtgGCcGcCgtgccgcgcgg
CtGACCGCGCTGACCTCGGGCGGGAcCattcCcGATACCGGCGACTACAGCGTGCTGCTGGAGCCGCAGGGC
CTGCTGGTGGGAACGGTCAACGAGGACTTCGCGGTGGAGAGCCTGGCCGGCGACGTGTTCCAACTGGGCAAC
ACCTCGTACCGGATCATCCGCATCGAGCCGGGACGGGTGCGGGTCGAGGACGCCCAGGGCCAGCCGCCGAAC
ATTCCGTTCTGGCTGGGTGAGGCGCCGGGGCGCAGCGACGAGCTGTCGGCCAGCGTGGCGCGCCTGCGCGAC
ACCCTCGACGAGCTGCTCGGCGAAGGTCAGGCATTGCCGGAAGGGCAGCGGCTGGAGCCAGCCATCGCTTGG
CTCGGCGCCACCCTCGGGCTGGACGATGGCGCCGCGCGGCAGATCGTCGAGTACCTGGCCCGCGCCCGTCAG
GCCCTGGGTGGCCTGCCCGGGAGCCGGCGGCTGGTGATGGAACGCTTCTTCGACGAATCCGGCGGCATGCAA
CTGATCATCCACAGTCCCCACGGCAGCCGCCTCAACCGCGCCTGGGGCCTGGCGCTGCGCAAGCGTTTCTGC
CGCAGCTTCAACTTCGAGCTGCAGGCGGCGGCCACCGAGGACGCGATCATCCTCTCGCTGTCCACCAGCCAC
AGCTTTCCCCTCGACGAGGTCTGGCGCTACCTGCATTCGGCGAGCGCCGAGCACCTGTTGGTACAGGCCGTG
CTCGACGCGCCGCTATTCGGCGTGCGCTGGCGCTGGAACCTGACCACCTCGCTCGGTTTGCCGCGCTATGCC
GGCGGTCGCAAGGTGCCGCCGCAACTGCTGCGGATGAAGAGCGAGGATCTGCTGGCCAGCGTGTTCCCCGAC
CAGGTGGCGTGCCTGGAGAATATCGTCGGCGAGCGCGAGGTGCCCGATCACCCGCTGGTGGCGCAGACCCTC
GACGACTGCCTGCACGAGGCGATGGATTGCGAGGGCTGGCTGGCCCTGCTGCGCGACATGGAGAGCGGCGCG
GTGGACTTGCTGGCGCGCGACCTGCCGGCGCCTTCGGCGTTGGCGGCGGAGATACTCACCGCGCGTCCCTAC
GCCTATCTCGACGATGCGCCGCTGGAGGAGCGGCGTACCCAGGCGGTACAGAATCGCCGCTGGAGCGATCCC
GAGTCCGCCGACGACCTCGGCGCCCTGGACCTTGAGGCGATCGAGGCGGTGCGTGGCGAGGCCTGGCCGGAA
GCGCGCAACGCCGACGAGATGCATGAGGCGCTGAACAGCCTGGGCTTCCTCACCTCGGGCGAGGCCGAGGCC
AATCCGGGCTGGGGGGAATGGCTTGCGCAACTGTCGGAGCAACGCCGCGCCGGACGCCTGGACTGCGCAGGC
AGCACTCTCTGGCTGGCGGCGGAGCGCCTGCCGGCGATGCGCCTGGTGCATCCCGCGGCGAAGGTGCCCGAC
GCTTTCCAGGCGCCTCGCGGCTATCCGCCGCCGGACTCGGCGGAAGCGGCGACCGTGGAGCTGACCCGCGCC
CGCCTGGGTGGCTTCGGGCCACGCACGGCCGGGCAGTTGGCGGCCGACCTGGGCATCGGCCTGGCCGACCAG
CAGTACGCGTTGGCCGCCCTGGAGCGCGAAGGCTATGTGCTGCGTGGCCGCTTCAGTCCTGGCGCGACGGAA
GAGGAGTGGTGCGAACGCCATCTGCTGGCGCGCATCCATCGCTATACGGTGAAGCGCCTGCGCCGGGAAATC
GAGCCGGTGCAGCGCGCCGATTTCATGCGCTTCCTGTTCGACTGGCAGCGCCTGGCGCCGGGCACCCGTGGC
CGGGGTGCGGAGTCCCTGGCTACGGTGGTCGAGCAGCTGGAAGGCTTCCAGGCCGCGGCGGCCGCCTGGGAA
AGCGAACTGCTGGCAGCGCGGGTGGCCGACTACGCCAGCCATTGGCTGGACCAGCTGTGTCGTTCCGGACGC
ATCGTCTGGGCGCGCCTGGCCGGACGCAGCAAGGCCGCCGGCGGTCCGCTGCGCAGCGCGCCGATCGTGCTC
CTGCCGCGCCGCGAACTGGGGCTCTGGAGCGTCCTGCAGCGCGACGCGCCGGAGCCGGAACTGTCGCCGCGC
GCGGCCAGGGTACTGGAGGTGCTGCGCGAGCAGGGTGCATCGTTCTTCGACGAACTGAGCCAGGACGCCCAC
CTGCTGCGCAGCGAGCTGGAGAACGCCCTCGGCGAGCTGGTCTCGGTCGGCCGGGTCAACGCCGACAGCTTC
GCCGGGCTGCGCACCCTGCTGATGCCGGCGGACAAGCGCAGCCGCCAGGAGCGCCGCTCGCGCGGCCTGCCG
GGCGGCATGCAGGACGCCGGGCGCTGGGCGCCGCTGCGCCGGGCGAAGGTGGAAGAGACGGGGCAGCGTTTG
CCGGCGGAGGTCCTCGAACATGTCGCCCGGACCCTGCTGCGGCGCTATGGGGTGGTCGCCTGGCGCCTGCTG
GAGCGCGAAGCCGACTGGCTGCCGCCGTGGCGCGAGCTGCTGCGCGTCTACCATCGCCTGGAAGCGCGCGGC
GAGATTCGCGGCGGGCGCTTCATCGCCGGCCTGGCCGGCGAGCAGTTCGCCTTGGCGGAAGCGGTCGGCCTG
TTGCGCGAGGTGCGCAAGCGGCCGCCGGATGGGGCGATGCTGGTGGTGTCGGCAGTCGATCCGTTGAACCTG
GTCGGCGGCCTGCTACCCGGCGAACGGGTGCCGGCGGTGACCGGCAACCGCCTGCTTTATCGAGACGGAGCG
CCGCTGGCGGCGCTGGTAGCCGGCAAGGTGCGGATGCTCGCGGAAGTCGACGGCGAGACCGCGCAGCAGATC
CGTGCGCTGCTGATCCGCCGTCACTGA |
Translation:
MPISSSSARRAEPAPRPLAEFHPAVRQWFERHFAAPTPAQVEAWPAIREGLSTLVAAPTGSGKTLTAFLAAI
DALVVEGLAAGGELADATQVVYVSPLKALSNDIRINLEQPLAGIREELARLGLPDVDIRSAVRTGDTPQVER
GAMRKRPPHILVTTPESLYILLGSESGRQMLAGVRSVIVDEIHALAGSKRGSHLALSLERLQALCPRPLLRI
GLSATQKPIEKVARFLVGASGNPRDPACRIVDIGYTRPRDLGIEVPPVALEAVMSNDTWELVYDRLAHLAGE
HRTTLVFVNTRRMAERVTRFLAERLGSRQVAAHHGSLAKELRLDAEQRLKAGQLKVLVATASLELGIDIGDV
ELVCQLSSPRSIAAFLQRVGRSGHSVGGTPKGRLFPTSRDDLVECAALLDSVRRGELDSLVLPRQPLDVLAQ
QIVAEVACQEWREDDLYRLVIRAEPYAGLERERFDEVLRMLAEGYHSRLGVRGAYLHRDALNGLLRGRRAAR
LTALTSGGTIPDTGDYSVLLEPQGLLVGTVNEDFAVESLAGDVFQLGNTSYRIIRIEPGRVRVEDAQGQPPN
IPFWLGEAPGRSDELSASVARLRDTLDELLGEGQALPEGQRLEPAIAWLGATLGLDDGAARQIVEYLARARQ
ALGGLPGSRRLVMERFFDESGGMQLIIHSPHGSRLNRAWGLALRKRFCRSFNFELQAAATEDAIILSLSTSH
SFPLDEVWRYLHSASAEHLLVQAVLDAPLFGVRWRWNLTTSLGLPRYAGGRKVPPQLLRMKSEDLLASVFPD
QVACLENIVGEREVPDHPLVAQTLDDCLHEAMDCEGWLALLRDMESGAVDLLARDLPAPSALAAEILTARPY
AYLDDAPLEERRTQAVQNRRWSDPESADDLGALDLEAIEAVRGEAWPEARNADEMHEALNSLGFLTSGEAEA
NPGWGEWLAQLSEQRRAGRLDCAGSTLWLAAERLPAMRLVHPAAKVPDAFQAPRGYPPPDSAEAATVELTRA
RLGGFGPRTAGQLAADLGIGLADQQYALAALEREGYVLRGRFSPGATEEEWCERHLLARIHRYTVKRLRREI
EPVQRADFMRFLFDWQRLAPGTRGRGAESLATVVEQLEGFQAAAAAWESELLAARVADYASHWLDQLCRSGR
IVWARLAGRSKAAGGPLRSAPIVLLPRRELGLWSVLQRDAPEPELSPRAARVLEVLREQGASFFDELSQDAH
LLRSELENALGELVSVGRVNADSFAGLRTLLMPADKRSRQERRSRGLPGGMQDAGRWAPLRRAKVEETGQRL
PAEVLEHVARTLLRRYGVVAWRLLEREADWLPPWRELLRVYHRLEARGEIRGGRFIAGLAGEQFALAEAVGL
LREVRKRPPDGAMLVVSAVDPLNLVGGLLPGERVPAVTGNRLLYRDGAPLAALVAGKVRMLAEVDGETAQQI
RALLIRRH* |
AnnotationID:23 | GeneID:13 |
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Modification Date/Time: |
2005-04-14 18:06:07 |
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GeneProduct: | putative ATP-dependent DNA helicase |
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Cell Localization Confidence Code: | 5 |
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MolecularFunction: | putative ATP-dependent DNA helicase lhr |
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Functional Category: | (11) DNA replication, recombination, modification and repair |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | transcription, RNA processing and degradation |
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Homology: | >gb|AAN66686.1|AE016296_6 (AE016778) ATP-dependent DNA helicase lhr, putative [Pseudomonas
putida KT2440]
Length = 1434
Score = 1828 bits (4734), Expect = 0.0
Identities = 955/1430 (66%), Positives = 1105/1430 (77%), Gaps = 24/1430 (1%)
>gb|AAM37301.1| (AE011882) ATP-dependent DNA helicase [Xanthomonas axonopodis pv.
citri str. 306]
Length = 1480
Score = 1752 bits (4537), Expect = 0.0
Identities = 928/1446 (64%), Positives = 1082/1446 (74%), Gaps = 21/1446 (1%)
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Structural Features: | COG1201, Lhr, Lhr-like helicases
CD-Length = 814 residues, 99.6% aligned
Score = 713 bits (1841), Expect = 0.0
Identities = 333/886 (37%), Positives = 468/886 (52%), Gaps = 76/886 (8%)
COG1205, Distinct helicase family
CD-Length = 851 residues, 79.2% aligned
Score = 163 bits (414), Expect = 1e-40
Identities = 162/724 (22%), Positives = 252/724 (34%), Gaps = 96/724 (13%)
COG0513, SrmB, Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and biogenesis]
CD-Length = 513 residues, 82.5% aligned
Score = 133 bits (336), Expect = 1e-31
Identities = 107/461 (23%), Positives = 181/461 (39%), Gaps = 44/461 (9%) |
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