ViewGene
Locus Name:
GeneID:
Location:

GeneID:1298
TrivialName: PA14_64270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64270
PAO1 Ortholog Locus:PA4858
Sequence Length:1266
Protein Length:421
Start: 5727116
Stop: 5728381
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08243.1|AE004899_4 (AE004899) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 418/421 (99%), Positives = 419/421 (99%)
Sequence:
ATGAAACGTCGCAGTCTGCTCAAGGCCTTCACGCTGTCCGCGTCCATCGCTTCCATGGGCCTGTCCTGGTCC
ATCCAGGCCGCCGAAACCATCAAGGTCGGCATCCTTCACTCGCTGTCCGGGACCATGGCGATCTCCGAGACC
TCGCTGAAGGACATGGCCCTGATGACCATCGACGAGATCAACGCCAAGGGCGGGGTCAACGGCAAGAAGCTG
GAGGCGGTGGTGGTCGATCCGGCGTCGAACTGGCCGCTGTTCGCGGAAAAGGCCCGCCAGTTGCTGACCCAG
GACAAGGTCGCGGTGGTCTTCGGTTGCTGGACCTCGGTGTCGCGCAAATCGGTGTTGCCGGTATTCGAGGAA
CTCAACGGATTGCTGTTCTACCCGGTCCAGTACGAGGGCGAGGAACTCTCGCCGAACGTCTTCTATACCGGC
GCGGCGCCGAACCAGCAGGCGATCCCGGCGGTGGAGTACCTGATGAGCGAGGACGGCGGCGGTGCCAGGCGC
TTCTTCCTGCTCGGCACCGACTATGTCTACCCGCGCACCACCAACAAGATCCTGCGCGCCTTCCTGCACAGC
AAGGGCGTGGACGACAAGGACATCCAGGAGGTCTACACGCCATTCGGCCACAGCGACTACCAGACCATCGTC
GCCGACATCAAGAAGTTCGCCGCAGGCGGCAAGACCGCGGTGGTCTCCACCGTCAATGGCGACTCCAACGTG
CCCTTCTACAAGGAACTGGCCAACCAGGGCCTGGAAGCCACCGAGGTGCCGGTGGTGGCCTTCTCCGTAGGC
GAGGAAGAACTGCGCGGCATCGACACCAAGCCGCTGGTCGGCAACCTCGCGGCATGGAACTACTTCGAGTCG
GTGAGCAATCCGGTCAACGAGAAGTTCGTCGCCGACTGGAAAGCCTACGCCAAGGCGAAGAACCTGCCGAAC
TACGCCACCGCGGTGACCAACGACCCCATGGAAGCCACCTACGTCGGCATCCATATGTGGGCGCAGGCCGTG
GAAAAGGCCGGCAGCACCGAGGTCGACAAGGTTCGCGAGGCGATGGCCGGGCAAAGCTTCAAGGCGCCATCC
GGCTACACGCTGGTCATGGACAAGAGCAACCACCACCTGCACAAGCCGGTGATGATCGGCGAGATCCAGGAC
GACGGCCAGTTCGAAGTGGTCTGGAAGACCCCCGAGCCGCTTCGCGCGCAACCCTGGAGCCCGTTCATCCCG
GGCAACGAGAAAAAGCCGGAGCATGCGCTGAAGAGCAACTGA
Translation:
MKRRSLLKAFTLSASIASMGLSWSIQAAETIKVGILHSLSGTMAISETSLKDMALMTIDEINAKGGVNGKKL
EAVVVDPASNWPLFAEKARQLLTQDKVAVVFGCWTSVSRKSVLPVFEELNGLLFYPVQYEGEELSPNVFYTG
AAPNQQAIPAVEYLMSEDGGGARRFFLLGTDYVYPRTTNKILRAFLHSKGVDDKDIQEVYTPFGHSDYQTIV
ADIKKFAAGGKTAVVSTVNGDSNVPFYKELANQGLEATEVPVVAFSVGEEELRGIDTKPLVGNLAAWNYFES
VSNPVNEKFVADWKAYAKAKNLPNYATAVTNDPMEATYVGIHMWAQAVEKAGSTEVDKVREAMAGQSFKAPS
GYTLVMDKSNHHLHKPVMIGEIQDDGQFEVVWKTPEPLRAQPWSPFIPGNEKKPEHALKSN*
AnnotationID:1307GeneID:1298
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 09:09:40
Gene Name:
Confidence Code:3
GeneProduct:putative branched-chain amino acid ABC transporter, periplasmic component
Cell Localization:()
Synonyms:PA4858
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0683
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70410.1|AE016683_1 (AE016792) branched-chain amino acid ABC transporter, periplasmic
           amino acid-binding protein, putative [Pseudomonas putida
           KT2440]
          Length = 421

 Score =  771 bits (1992), Expect = 0.0
 Identities = 377/421 (89%), Positives = 404/421 (95%)

>gb|AAO58314.1| (AE016873) branched-chain amino acid ABC transporter, periplasmic
           amino acid-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 421

 Score =  763 bits (1971), Expect = 0.0
 Identities = 371/421 (88%), Positives = 402/421 (95%)

>gb|AAM86553.1|AE013902_1 (AE013902) putative Leu/Ile/Val/Thr binding protein of ABC
           transporter [Yersinia pestis KIM]
          Length = 432

 Score =  709 bits (1829), Expect = 0.0
 Identities = 340/421 (80%), Positives = 388/421 (92%)






 
Structural Features:
COG0683, LivK, ABC-type branched-chain amino acid transport systems, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 366 residues,  98.6% aligned
Score =  269 bits (688), Expect = 4e-73
Identities = 128/377 (33%), Positives = 183/377 (48%), Gaps = 22/377 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2599




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19741




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35198




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1298_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1298
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2361
                           PA4858_tr
                           translation of PA4858
                           421
                           99.28
                           99.52
                           0
                           2169.0
     

     
     
75775
                           gb|AAG08243.1|AE004899_4
                           (AE004899) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           421
                           99.28
                           99.52
                           0
                           2169.0
     

     
     
75776
                           gb|AAN70410.1|AE016683_1
                           (AE016792) branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative [Pseudomonas putida KT2440]
                           421
                           89.54
                           95.96
                           0
                           1992.0
     

     
     
75777
                           gb|AAO58314.1|
                           (AE016873) branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           421
                           88.12
                           95.48
                           0
                           1971.0
     

     
     
75779
                           emb|CAC90028.1|
                           (AJ414147) putative substrate-binding periplasmic transport protein [Yersinia pestis CO92]
                           422
                           80.56
                           91.94
                           1
                           1829.0
     

     






      

          
GC ORFID: 44300How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4858Glimmer Score: 

          
Start: 4990796Stop: 4992061

          
Length: 1266


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4858 translation of PA4858Homolog Bit Score 840.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5797 (ORF: BLASTX 766.0), psyr_15may02_Scaffold1_revised_gene281 (ORF: BLASTX 317.0), t_PA4858 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGTCGCAGTCTGCTCAAGGCCTTCACGCTGTCCGCGTCCATCGCTTCCATGGGCCTGTCCTGGTCC 
ATCCAGGCCGCCGAAACCATCAAGGTCGGCATCCTTCACTCGCTGTCCGGGACCATGGCGATCTCCGAGACC 
TCGCTGAAGGACATGGCCCTGATGACCATCGACGAGATCAACGCCAAGGGCGGGGTCAACGGCAAGAAGCTG 
GAGGCGGTGGTGGTCGATCCGGCGTCGAACTGGCCGCTGTTCGCGGAAAAGGCCCGCCAGTTGCTGACCCAG 
GACAAGGTCGCGGTGGTCTTCGGTTGCTGGACCTCGGTGTCGCGCAAATCGGTGTTGCCGGTATTCGAGGAA 
CTCAACGGATTGCTGTTCTACCCGGTCCAGTACGAGGGCGAGGAACTCTCGCCGAACGTCTTCTATACCGGC 
GCGGCGCCGAACCAGCAGGCGATCCCGGCGGTGGAGTACCTGATGAGCGAGGACGGCGGCGGTGCCAGGCGC 
TTCTTCCTGCTCGGCACCGACTATGTCTACCCGCGCACCACCAACAAGATCCTGCGCGCCTTCCTGCACAGC 
AAGGGCGTGGACGACAAGGACATCCAGGAGGTCTACACGCCATTCGGCCACAGCGACTACCAGACCATCGTC 
GCCGACATCAAGAAGTTCGCCGCAGGCGGCAAGACCGCGGTGGTCTCCACCGTCAATGGCGACTCCAACGTG 
CCCTTCTACAAGGAACTGGCCAACCAGGGCCTGGAAGCCACCGAGGTGCCGGTGGTGGCCTTCTCCGTAGGC 
GAGGAAGAACTGCGCGGCATCGACACCAAGCCGCTGGTCGGCAACCTCGCGGCATGGAACTACTTCGAGTCG 
GTGAGCAATCCGGTCAACGAGAAGTTCGTCGCCGACTGGAAAGCCTACGCCAAGGCGAAGAACCTGCCGAAC 
TACGCCACCGCGGTGACCAACGACCCCATGGAAGCCACCTACGTCGGCATCCATATGTGGGCGCAGGCCGTG 
GAAAAGGCCGGCAGCACCGAGGTCGACAAGGTTCGCGAGGCGATGGCCGGGCAAAGCTTCAAGGCGCCATCC 
GGCTACACGCTGGTCATGGACAAGAGCAACCACCACCTGCACAAGCCGGTGATGATCGGCGAGATCCAGGAC 
GACGGCCAGTTCGAAGTGGTCTGGAAGACCCCCGAGCCGCTTCGCGCGCAACCCTGGAGCCCGTTCATCCCG 
GGCAACGAGAAAAAGCCGGAGCATGCGCTGAAGAGCAACTGA