ViewGene
Locus Name:
GeneID:
Location:

GeneID:1296
TrivialName: PA14_29770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29770
PAO1 Ortholog Locus:PA2653
Sequence Length:1326
Protein Length:441
Start: 2578707
Stop: 2580032
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06041.1|AE004694_4 (AE004694) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 437/441 (99%), Positives = 438/441 (99%)
Sequence:
ATGAACGCAGTGGTGCTGGCGGTCGCACTGATGCTCGTCCTCAGCCTTTGCCGTGTGCATGTCGTGCTGGCG
CTGATCATCGGCGCGGTGGTCGGCGGACTGTTCGGTGGCCTAGGCCTGGAGGGGACTCTCAAGGCCTTCAAC
GGCGGCCTCGGCGGCGGCGCCACGGTGGCCCTGTCGTACGCCATGCTCGGCGCCTTCGCCGTGGCCATCGCT
CGCTCCGGCGTGGCCCATGCGCTGGCCGACAAGGTCCTGGTGCTGCTCGGCCGGCACGACGAGCAGGGCAAG
GGCGCCGGTGCGTTCAAGTGGATCCTGGTCGGCCTGCTGCTCTGCGTGGCGGTATCCTCGCAGAATATCCTG
CCGATCCACATCGCCTTCATCCCGCTGCTGGTGCCGCCGCTGCTCTATGTGCTGAGCAAGCTGCAGATCGAC
CGGCGATTGATCGCCTGCGTCATCACCTTCGGCCTCATCACCCCGTACATGTTCCTGCCGGTGGGCTTCGGC
AACATCTTCCTCAATGAAATCCTGCTGGCCAACGTGGCGCGCAACGGCGTCGACGTCAGCGGGATCAACGTC
ACCCACGCCATGTTCATCCCGGCCCTGGGCATGCTCGCCGGGTTGCTCATCGCGGTGCTGTTCAGCTACCGC
CGCAAGCGCGTCTACGACTTGCAGCGGATCGAGCAGGCCGAACGCGTCGATGTCAGCTATAGCCCGAAAAGC
CTGGCGGTGGCCGGGGTCTCCATCGTCGCCGCGTTCGTCGTGCAGCTGTGGCTGGACTCGATGATCATCGGC
GCGCTGGTCGGTTTCGTGGTCTTCTCGCTGTCCGGCGTGGTGCGCTGGAAGGAGACCGACGACCTGTTCACC
GAAGGCATGAAGATGATGGCCACCATCGGTTTCATCATGATCGCCGCGGCCGGTTTCGCCGAGGTGATGAAG
GCCACCGGCGAGGTGCAGAGCCTGGTCGACGCCTCGGTGGCCTGGATCGGCAACAGCAAGGCGGTCGGCGCC
ATGCTGATGCTGCTGGTCGGCCTGCTGGTCACCATGGGCATCGGCTCGTCGTTCTCCACCGTGCCGATCATC
GCCGCGATCTTCGTCCCGCTGGCGGTGCAACTGGGCTTCAGCCCGCTGGCCATCGTCAGCATCGTCGGCACC
GCCGGCGCGCTGGGGGATGCAGGTTCTCCGGCGTCGGACTCGACCCTCGGGCCGACCTCCGGGCTCAACGTC
GACGGCCAGCACAATCACATCTGGGACACCGTGGTGCCGACCTTCCTGCACTACAACCTGCCGTTGCTGGTG
TTCGGCTGGGCCGCCGCGATGTTGCTCTGA
Translation:
MNAVVLAVALMLVLSLCRVHVVLALIIGAVVGGLFGGLGLEGTLKAFNGGLGGGATVALSYAMLGAFAVAIA
RSGVAHALADKVLVLLGRHDEQGKGAGAFKWILVGLLLCVAVSSQNILPIHIAFIPLLVPPLLYVLSKLQID
RRLIACVITFGLITPYMFLPVGFGNIFLNEILLANVARNGVDVSGINVTHAMFIPALGMLAGLLIAVLFSYR
RKRVYDLQRIEQAERVDVSYSPKSLAVAGVSIVAAFVVQLWLDSMIIGALVGFVVFSLSGVVRWKETDDLFT
EGMKMMATIGFIMIAAAGFAEVMKATGEVQSLVDASVAWIGNSKAVGAMLMLLVGLLVTMGIGSSFSTVPII
AAIFVPLAVQLGFSPLAIVSIVGTAGALGDAGSPASDSTLGPTSGLNVDGQHNHIWDTVVPTFLHYNLPLLV
FGWAAAMLL*
AnnotationID:1305GeneID:1296
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:59
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA2653
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative Na+/H+ antiporter
Functional Category Confidence Code:5
COGs:COG2056,pfam03553
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69157.1|AE016549_6 (AE016787) Na+/H+ antiporter family protein [Pseudomonas putida
           KT2440]
          Length = 439

 Score =  694 bits (1791), Expect = 0.0
 Identities = 351/441 (79%), Positives = 396/441 (89%), Gaps = 2/441 (0%)

>gb|AAN55783.1|AE015715_2 (AE015715) membrane protein, putative [Shewanella oneidensis MR-1]
          Length = 439

 Score =  516 bits (1329), Expect = e-145
 Identities = 264/441 (59%), Positives = 343/441 (77%), Gaps = 2/441 (0%)

>gb|AAO11427.1|AE016807_146 (AE016807) Predicted permease [Vibrio vulnificus CMCP6]
          Length = 425

 Score =  501 bits (1291), Expect = e-141
 Identities = 254/425 (59%), Positives = 321/425 (75%), Gaps = 2/425 (0%)








 
Structural Features:
COG2056, COG2056, Predicted permease
CD-Length = 444 residues, 100.0% aligned
Score =  560 bits (1446), Expect = 9e-161
Identities = 279/446 (62%), Positives = 350/446 (78%), Gaps = 7/446 (1%)

pfam03553, Na_H_antiporter, Na+/H+ antiporter family.
CD-Length = 301 residues, 100.0% aligned
Score =  165 bits (420), Expect = 7e-42
Identities = 109/305 (35%), Positives = 156/305 (51%), Gaps = 24/305 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33190




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1296_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1296
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
2358
                           PA2653_tr
                           translation of PA2653
                           441
                           99.09
                           99.31
                           0
                           2169.0
     

     
     
75714
                           gb|AAG06041.1|AE004694_4
                           (AE004694) probable transporter [Pseudomonas aeruginosa PAO1]
                           441
                           99.09
                           99.31
                           0
                           2169.0
     

     
     
75715
                           gb|AAN69157.1|AE016549_6
                           (AE016787) Na+/H+ antiporter family protein [Pseudomonas putida KT2440]
                           441
                           79.59
                           89.79
                           2
                           1795.0
     

     
     
75716
                           gb|AAQ58134.1|
                           (AE016911) probable transporter [Chromobacterium violaceum ATCC 12472]
                           441
                           64.17
                           79.13
                           4
                           1451.0
     

     
     
75717
                           gb|AAF94166.1|
                           (AE004182) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           442
                           61.31
                           77.37
                           2
                           1375.0
     

     






      

          
GC ORFID: 44298How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2653Glimmer Score: 

          
Start: 2375219Stop: 2373894

          
Length: 1326


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2653 translation of PA2653Homolog Bit Score 840.0

          
Other Homologs:  t_PA2653 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCAGTGGTGCTGGCGGTCGCACTGATGCTCGTCCTCAGCCTTTGCCGTGTGCATGTCGTGCTGGCG 
CTGATCATCGGCGCGGTGGTCGGCGGACTGTTCGGTGGCCTAGGCCTGGAGGGGACTCTCAAGGCCTTCAAC 
GGCGGCCTCGGCGGCGGCGCCACGGTGGCCCTGTCGTACGCCATGCTCGGCGCCTTCGCCGTGGCCATCGCT 
CGCTCCGGCGTGGCCCATGCGCTGGCCGACAAGGTCCTGGTGCTGCTCGGCCGGCACGACGAGCAGGGCAAG 
GGCGCCGGTGCGTTCAAGTGGATCCTGGTCGGCCTGCTGCTCTGCGTGGCGGTATCCTCGCAGAATATCCTG 
CCGATCCACATCGCCTTCATCCCGCTGCTGGTGCCGCCGCTGCTCTATGTGCTGAGCAAGCTGCAGATCGAC 
CGGCGATTGATCGCCTGCGTCATCACCTTCGGCCTCATCACCCCGTACATGTTCCTGCCGGTGGGCTTCGGC 
AACATCTTCCTCAATGAAATCCTGCTGGCCAACGTGGCGCGCAACGGCGTCGACGTCAGCGGGATCAACGTC 
ACCCACGCCATGTTCATCCCGGCCCTGGGCATGCTCGCCGGGTTGCTCATCGCGGTGCTGTTCAGCTACCGC 
CGCAAGCGCGTCTACGACTTGCAGCGGATCGAGCAGGCCGAACGCGTCGATGTCAGCTATAGCCCGAAAAGC 
CTGGCGGTGGCCGGGGTCTCCATCGTCGCCGCGTTCGTCGTGCAGCTGTGGCTGGACTCGATGATCATCGGC 
GCGCTGGTCGGTTTCGTGGTCTTCTCGCTGTCCGGCGTGGTGCGCTGGAAGGAGACCGACGACCTGTTCACC 
GAAGGCATGAAGATGATGGCCACCATCGGTTTCATCATGATCGCCGCGGCCGGTTTCGCCGAGGTGATGAAG 
GCCACCGGCGAGGTGCAGAGCCTGGTCGACGCCTCGGTGGCCTGGATCGGCAACAGCAAGGCGGTCGGCGCC 
ATGCTGATGCTGCTGGTCGGCCTGCTGGTCACCATGGGCATCGGCTCGTCGTTCTCCACCGTGCCGATCATC 
GCCGCGATCTTCGTCCCGCTGGCGGTGCAACTGGGCTTCAGCCCGCTGGCCATCGTCAGCATCGTCGGCACC 
GCCGGCGCGCTGGGGGATGCAGGTTCTCCGGCGTCGGACTCGACCCTCGGGCCGACCTCCGGGCTCAACGTC 
GACGGCCAGCACAATCACATCTGGGACACCGTGGTGCCGACCTTCCTGCACTACAACCTGCCGTTGCTGGTG 
TTCGGCTGGGCCGCCGCGATGTTGCTCTGA