ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1294

TrivialName: PA14_39270

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_39270

PAO1 Ortholog Locus: PA1951

Sequence Length: 1266

Protein Length: 421

Start: 3496426

Stop: 3497691

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05339.1|AE004622_1 (AE004622) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 421/421 (100%), Positives = 421/421 (100%)

Sequence:

ATGACCCAGACACTCTCGCTGCGAGCTGTCCTCTGCGCCACCACCCTGGTTTCCCCGTTCCTGGCGCAGGCC
GCGACGGAGTCCGAGGTCGAGGCGCTGAAGAAGGAACTCCTGGAGCTGCGCCAACGCTACGAGGCCCAGCAG
AACGCCCTGATGGTCCTCGAACAGCGCGTGCGCCAGGTCGAGGCGCAACCCCAGGCGCCGCAGCCGCAACGC
CTGGTCAAGTCGATCCAGCCGCCGGCGCAGGCGCGCAACGACGCCAACGCGGTCGCCGGCACCTACGGCGCC
AGCCTCAAGGACGATGGCGCGCCCGCGCCCAGCGTGGAAAACATCTACCAGGACGCCAGCGGCTTCTTCGGC
GGCGGCACCTTCAGCCTGGAGACCGGCCTCACCTACAGCCACTACGACACCCGCCAGTTGTTCCTCAACGGC
TTCCTGGCGCTGGACTCGATCTTCCTCGGCAACATCGGCGTGGACCAGATCGATGCCGACATCTGGACCCTC
GACCTGACCGGCCGCTACAACTGGAACCAGCGCTGGCAGGTGGATATCAACGCCCCGGTGGTCTATCGCGAA
TCGACCTACCAGTCCGCCGGCGCCGGCGGCTCGACCTCGCAGATCACCGAGAAATCGGTGACCGGCGACCCA
CGCCTAGGCGACGTCAGCTTCGGCGTCGCCTACAAGTTCCTCGACGAAAGCGAGAGCACCCCGGACGCGGTG
GTCAGCCTGCGGGTCAAGGCGCCCACCGGCAAGGATCCCTACGGCATCAAGCTGAAGCAGGTACCGGGCAAC
AACAACCTCAACGTGCCCGACGACCTGCCCACCGGCAACGGCGTCTGGTCGATCACCCCGGGCATCTCGCTG
GTGAAGACGGTGGACCCGGCGGTGCTGTTCGGCAGCCTGTCGTATACCTACAACTTCGAAGAGTCGTTCGAC
GACATCAACCCGCAGCAAGGCGTGAAGACCGGCGGCAAGGTCAAGCTCGGCAACTGGTTCCAACTCGGCGTC
GGCGTGGCCTTCGCGCTGAACGAGAAGATGAGCATGTCGTTCTCCTTCTCCGAACTGATCAGCCAGAAGAGC
AAGGTCAAGCAGGACGGCCAAAGCTGGCAGACCGTCAGCGGCAGCGACGCCAACGCCGGCTACTTCGGCCTG
GGCATGACCTATGCGGTGAGCAACAGGTTCAGCATCGTGCCCAGCCTGTCCATCGGCATCACTCCGGACGCG
CCGGACTTCACCTTCGGCGTGAAATTCCCCTACTACTTCTGA

Translation:

MTQTLSLRAVLCATTLVSPFLAQAATESEVEALKKELLELRQRYEAQQNALMVLEQRVRQVEAQPQAPQPQR
LVKSIQPPAQARNDANAVAGTYGASLKDDGAPAPSVENIYQDASGFFGGGTFSLETGLTYSHYDTRQLFLNG
FLALDSIFLGNIGVDQIDADIWTLDLTGRYNWNQRWQVDINAPVVYRESTYQSAGAGGSTSQITEKSVTGDP
RLGDVSFGVAYKFLDESESTPDAVVSLRVKAPTGKDPYGIKLKQVPGNNNLNVPDDLPTGNGVWSITPGISL
VKTVDPAVLFGSLSYTYNFEESFDDINPQQGVKTGGKVKLGNWFQLGVGVAFALNEKMSMSFSFSELISQKS
KVKQDGQSWQTVSGSDANAGYFGLGMTYAVSNRFSIVPSLSIGITPDAPDFTFGVKFPYYF*

AnnotationID:1303 GeneID:1294

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 13:01:06

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1951

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2591

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19733

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32767

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1294_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1294

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

2356 PA1951_tr translation of PA1951 421 99.99 99.99 0 2173.0

75704 gb|AAG05339.1|AE004622_1 (AE004622) hypothetical protein PA1951 [Pseudomonas aeruginosa PAO1] 421 99.99 99.99 0 2173.0

75705 gb|AAN68461.1|AE016479_1 (AE016784) conserved hypothetical protein [Pseudomonas putida KT2440] 429 63.86 77.38 11 1415.0

75706 gb|AAQ58365.1| (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 438 48.17 64.84 28 998.0

GC ORFID: `44296`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1951`	Glimmer Score:
Start: `1457485`	Stop: `1456220`
Length: `1266`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1951 translation of PA1951`	Homolog Bit Score `841.0`
Other Homologs: `t_PA1951 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCCAGACACTCTCGCTGCGAGCTGTCCTCTGCGCCACCACCCTGGTTTCCCCGTTCCTGGCGCAGGCC GCGACGGAGTCCGAGGTCGAGGCGCTGAAGAAGGAACTCCTGGAGCTGCGCCAACGCTACGAGGCCCAGCAG AACGCCCTGATGGTCCTCGAACAGCGCGTGCGCCAGGTCGAGGCGCAACCCCAGGCGCCGCAGCCGCAACGC CTGGTCAAGTCGATCCAGCCGCCGGCGCAGGCGCGCAACGACGCCAACGCGGTCGCCGGCACCTACGGCGCC AGCCTCAAGGACGATGGCGCGCCCGCGCCCAGCGTGGAAAACATCTACCAGGACGCCAGCGGCTTCTTCGGC GGCGGCACCTTCAGCCTGGAGACCGGCCTCACCTACAGCCACTACGACACCCGCCAGTTGTTCCTCAACGGC TTCCTGGCGCTGGACTCGATCTTCCTCGGCAACATCGGCGTGGACCAGATCGATGCCGACATCTGGACCCTC GACCTGACCGGCCGCTACAACTGGAACCAGCGCTGGCAGGTGGATATCAACGCCCCGGTGGTCTATCGCGAA TCGACCTACCAGTCCGCCGGCGCCGGCGGCTCGACCTCGCAGATCACCGAGAAATCGGTGACCGGCGACCCA CGCCTAGGCGACGTCAGCTTCGGCGTCGCCTACAAGTTCCTCGACGAAAGCGAGAGCACCCCGGACGCGGTG GTCAGCCTGCGGGTCAAGGCGCCCACCGGCAAGGATCCCTACGGCATCAAGCTGAAGCAGGTACCGGGCAAC AACAACCTCAACGTGCCCGACGACCTGCCCACCGGCAACGGCGTCTGGTCGATCACCCCGGGCATCTCGCTG GTGAAGACGGTGGACCCGGCGGTGCTGTTCGGCAGCCTGTCGTATACCTACAACTTCGAAGAGTCGTTCGAC GACATCAACCCGCAGCAAGGCGTGAAGACCGGCGGCAAGGTCAAGCTCGGCAACTGGTTCCAACTCGGCGTC GGCGTGGCCTTCGCGCTGAACGAGAAGATGAGCATGTCGTTCTCCTTCTCCGAACTGATCAGCCAGAAGAGC AAGGTCAAGCAGGACGGCCAAAGCTGGCAGACCGTCAGCGGCAGCGACGCCAACGCCGGCTACTTCGGCCTG GGCATGACCTATGCGGTGAGCAACAGGTTCAGCATCGTGCCCAGCCTGTCCATCGGCATCACTCCGGACGCG CCGGACTTCACCTTCGGCGTGAAATTCCCCTACTACTTCTGA